Wall clock time and date at job start Tue Mar 31 2020 14:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.51694 * 2 1 4 4 C 1.53087 * 109.57537 * 120.15480 * 2 1 3 5 5 O 1.42901 * 109.41690 * 177.54838 * 4 2 1 6 6 C 1.42905 * 114.09871 * 298.84700 * 5 4 2 7 7 C 1.53107 * 109.48898 * 61.10502 * 6 5 4 8 8 C 1.53178 * 109.52136 * 239.87565 * 2 1 3 9 9 H 1.09001 * 109.54387 * 303.00126 * 8 2 1 10 10 C 1.52999 * 109.54349 * 63.18294 * 8 2 1 11 11 N 1.46492 * 109.46927 * 184.81997 * 10 8 2 12 12 C 1.34773 * 120.00315 * 179.97438 * 11 10 8 13 13 O 1.21597 * 119.99582 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00700 * 180.02562 * 12 11 10 15 15 C 1.40201 * 120.00527 * 179.97438 * 14 12 11 16 16 C 1.40403 * 125.96916 * 0.02562 * 15 14 12 17 17 C 1.35245 * 107.86382 * 179.97438 * 16 15 14 18 18 N 1.34958 * 107.85922 * 0.02562 * 17 16 15 19 19 C 1.46499 * 125.97492 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47453 * 124.99908 * 19 18 17 21 21 H 1.08001 * 119.99543 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00167 * 180.02562 * 20 19 18 23 23 N 1.31507 * 120.00096 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99936 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47041 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.46933 * 120.00112 * 24 22 20 27 27 H 1.48494 * 109.47141 * 240.00354 * 24 22 20 28 28 N 1.31205 * 125.97309 * 179.97438 * 15 14 12 29 29 H 1.09003 * 109.46654 * 180.12910 * 1 2 3 30 30 H 1.09001 * 109.46798 * 300.11888 * 1 2 3 31 31 H 1.08990 * 109.47401 * 60.12674 * 1 2 3 32 32 H 1.09007 * 109.48433 * 297.52964 * 4 2 1 33 33 H 1.09000 * 109.48149 * 57.55710 * 4 2 1 34 34 H 1.09000 * 109.48609 * 181.13721 * 6 5 4 35 35 H 1.09009 * 109.47741 * 301.16279 * 6 5 4 36 36 H 1.08999 * 109.59821 * 182.58007 * 7 6 5 37 37 H 1.09003 * 109.44870 * 62.38893 * 7 6 5 38 38 H 1.09002 * 109.47244 * 64.82292 * 10 8 2 39 39 H 1.08997 * 109.46803 * 304.81915 * 10 8 2 40 40 H 0.97006 * 120.00365 * 0.02562 * 11 10 8 41 41 H 0.97006 * 119.99980 * 0.02562 * 14 12 11 42 42 H 1.07998 * 126.06519 * 0.24214 * 16 15 14 43 43 H 1.07999 * 126.06829 * 179.97438 * 17 16 15 44 44 H 1.09000 * 109.47073 * 244.99937 * 19 18 17 45 45 H 1.09001 * 109.47506 * 4.99854 * 19 18 17 46 46 H 0.97004 * 120.00286 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0429 -0.7246 1.2472 5 8 3.4708 -0.7726 1.2152 6 6 4.0058 -1.4792 0.0942 7 6 3.5717 -0.7869 -1.2006 8 6 2.0419 -0.7246 -1.2487 9 1 1.6364 -1.7360 -1.2753 10 6 1.5998 0.0372 -2.4998 11 7 1.9903 -0.7164 -3.6938 12 6 1.7018 -0.2347 -4.9190 13 8 1.1170 0.8252 -5.0333 14 7 2.0606 -0.9282 -6.0175 15 6 1.7600 -0.4274 -7.2920 16 6 1.0937 0.7771 -7.5687 17 6 0.9996 0.9001 -8.9123 18 7 1.5821 -0.1827 -9.4688 19 6 1.7015 -0.4537 -10.9035 20 6 3.1492 -0.6857 -11.2522 21 1 3.9047 -0.6358 -10.4820 22 6 3.5092 -0.9606 -12.5544 23 7 2.5894 -1.0198 -13.4924 24 14 5.3038 -1.2474 -12.9867 25 1 6.1336 -1.1258 -11.7611 26 1 5.4636 -2.6082 -13.5591 27 1 5.7405 -0.2367 -13.9831 28 7 2.0530 -1.0018 -8.4347 29 1 -0.3633 -1.0277 0.0023 30 1 -0.3633 0.5157 0.8889 31 1 -0.3633 0.5118 -0.8910 32 1 1.7172 -0.1886 2.1388 33 1 1.6453 -1.7393 1.2674 34 1 5.0941 -1.4869 0.1549 35 1 3.6341 -2.5039 0.0993 36 1 3.9405 -1.3501 -2.0578 37 1 3.9784 0.2241 -1.2255 38 1 2.0773 1.0170 -2.5163 39 1 0.5170 0.1608 -2.4861 40 1 2.4559 -1.5625 -3.6026 41 1 2.5261 -1.7744 -5.9263 42 1 0.7258 1.4825 -6.8383 43 1 0.5394 1.7189 -9.4452 44 1 1.1205 -1.3409 -11.1553 45 1 1.3243 0.3996 -11.4671 46 1 2.8427 -1.2129 -14.4087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287210568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:18 Heat of formation + Delta-G solvation = -4.631743 kcal Electronic energy + Delta-G solvation = -26529.613046 eV Core-core repulsion = 22648.903267 eV Total energy + Delta-G solvation = -3880.709779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.77809 -40.23198 -39.35886 -36.34190 -34.66536 -34.09950 -33.30324 -32.32475 -30.85013 -29.28560 -28.07442 -27.08869 -26.48820 -23.64220 -22.91581 -22.69959 -21.53746 -20.65543 -20.26144 -19.74018 -18.00340 -16.91387 -16.59078 -16.56559 -16.21490 -15.95517 -15.72633 -15.18527 -14.95873 -14.79583 -14.48412 -14.23209 -13.96679 -13.87537 -13.59128 -12.92600 -12.74859 -12.56695 -12.43095 -12.35988 -12.28009 -12.19467 -11.75911 -11.57810 -11.37201 -11.05704 -10.93758 -10.87843 -10.71218 -10.41106 -10.25886 -10.07843 -9.89554 -9.67643 -9.47535 -9.21691 -8.63251 -8.08705 -7.39951 -6.23831 -4.28642 2.38498 2.67955 3.12739 3.22324 3.29806 3.36212 3.44544 3.61140 3.85413 4.15730 4.17060 4.21069 4.30314 4.38416 4.45116 4.74254 4.84142 4.95735 5.01558 5.05268 5.11316 5.14284 5.23242 5.33104 5.36332 5.45103 5.50146 5.56312 5.63914 5.66313 5.81886 5.82342 5.93193 6.21531 6.30323 6.55531 6.59110 6.75523 6.88463 7.01853 7.11625 7.51067 7.70553 7.83315 7.98525 8.08117 8.59774 8.67838 8.82088 9.36904 10.84875 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.002069 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.861214 B =13531.604064 C =14457.105463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 H 0.084 0.916 4 C 0.066 3.934 5 O -0.383 6.383 6 C 0.060 3.940 7 C -0.153 4.153 8 C -0.097 4.097 9 H 0.080 0.920 10 C 0.145 3.855 11 N -0.744 5.744 12 C 0.713 3.287 13 O -0.567 6.567 14 N -0.644 5.644 15 C 0.275 3.725 16 C -0.286 4.286 17 C 0.051 3.949 18 N -0.321 5.321 19 C 0.258 3.742 20 C -0.527 4.527 21 H 0.069 0.931 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.282 1.282 28 N -0.308 5.308 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.395 0.605 41 H 0.406 0.594 42 H 0.161 0.839 43 H 0.167 0.833 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.255 -0.644 28.105 28.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.138 4.138 3 H 0.103 0.897 4 C -0.010 4.010 5 O -0.302 6.302 6 C -0.017 4.017 7 C -0.191 4.191 8 C -0.116 4.116 9 H 0.098 0.902 10 C 0.021 3.979 11 N -0.401 5.401 12 C 0.412 3.588 13 O -0.443 6.443 14 N -0.294 5.294 15 C 0.021 3.979 16 C -0.318 4.318 17 C -0.099 4.099 18 N -0.103 5.103 19 C 0.141 3.859 20 C -0.565 4.565 21 H 0.087 0.913 22 C -0.142 4.142 23 N -0.534 5.534 24 Si 0.735 3.265 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.208 1.208 28 N -0.139 5.139 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.229 0.771 41 H 0.240 0.760 42 H 0.178 0.822 43 H 0.185 0.815 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.166 -0.626 27.261 27.354 hybrid contribution 0.861 -0.485 -0.270 1.025 sum -1.305 -1.111 26.990 27.045 Atomic orbital electron populations 1.21853 0.94040 1.02329 1.02697 1.21739 0.96629 1.00932 0.94496 0.89742 1.22653 0.80984 0.99661 0.97750 1.87951 1.20319 1.76442 1.45450 1.22596 0.99229 0.94478 0.85359 1.22299 0.95382 1.02863 0.98559 1.21501 0.95811 1.00179 0.94146 0.90214 1.21287 1.00531 0.94741 0.81362 1.45024 1.64600 1.26324 1.04190 1.15620 0.79766 0.83566 0.79882 1.90871 1.45961 1.22371 1.85067 1.41383 1.61096 1.24991 1.01912 1.18784 1.00261 0.94526 0.84290 1.21510 1.14290 1.01057 0.94919 1.22554 0.99998 0.93518 0.93850 1.49046 1.40100 1.13832 1.07276 1.19737 0.99250 0.98576 0.68375 1.21301 0.91757 1.49236 0.94214 0.91267 1.24953 0.98516 0.94825 0.95881 1.69925 1.33121 1.48613 1.01717 0.86276 0.83907 0.77890 0.78444 1.19587 1.20716 1.20767 1.77317 1.24854 1.18905 0.92837 0.92407 0.92188 0.91496 0.88727 0.93105 0.88735 0.93159 0.90568 0.90486 0.91313 0.90932 0.77085 0.75950 0.82213 0.81535 0.93764 0.92536 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 8.93 37.16 0.33 -0.44 16 2 C -0.12 -0.68 2.41 -90.48 -0.22 -0.89 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 4 C 0.07 0.39 6.13 37.20 0.23 0.62 16 5 O -0.38 -3.06 10.77 -35.23 -0.38 -3.44 16 6 C 0.06 0.36 6.84 37.21 0.25 0.62 16 7 C -0.15 -0.91 5.26 -26.58 -0.14 -1.05 16 8 C -0.10 -0.58 1.80 -90.43 -0.16 -0.74 16 9 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 10 C 0.14 1.22 4.91 -4.05 -0.02 1.20 16 11 N -0.74 -7.14 5.32 -65.23 -0.35 -7.48 16 12 C 0.71 10.39 8.53 -86.92 -0.74 9.65 16 13 O -0.57 -10.27 13.47 5.28 0.07 -10.20 16 14 N -0.64 -10.00 5.45 -15.51 -0.08 -10.08 16 15 C 0.28 5.60 8.11 -154.36 -1.25 4.34 16 16 C -0.29 -5.80 9.61 -39.83 -0.38 -6.18 16 17 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 18 N -0.32 -7.53 3.67 -62.56 -0.23 -7.76 16 19 C 0.26 6.60 6.26 -5.19 -0.03 6.57 16 20 C -0.53 -14.71 9.24 -34.44 -0.32 -15.03 16 21 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.90 -25.39 13.29 55.43 0.74 -24.65 16 24 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 N -0.31 -7.14 12.42 31.44 0.39 -6.75 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.39 6.42 -51.93 -0.33 0.06 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16 36 H 0.08 0.40 7.29 -51.93 -0.38 0.02 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.66 6.30 -51.93 -0.33 0.34 16 40 H 0.40 2.67 7.70 -40.82 -0.31 2.35 16 41 H 0.41 5.04 8.84 -40.82 -0.36 4.68 16 42 H 0.16 3.18 5.91 -52.49 -0.31 2.87 16 43 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 44 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 46 H 0.27 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -33.73 374.44 -9.03 -42.76 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.06 Total: 4.50 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -2.75 Total: 1.07 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.47 Total: -56.72 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.31 Total: -13.64 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.73 -9.03 -42.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287210568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.131 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds