Wall clock time and date at job start Tue Mar 31 2020 14:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.51694 * 2 1 4 4 C 1.53087 * 109.57537 * 120.15480 * 2 1 3 5 5 O 1.42901 * 109.41690 * 177.54838 * 4 2 1 6 6 C 1.42905 * 114.09871 * 298.84700 * 5 4 2 7 7 C 1.53107 * 109.48898 * 61.10502 * 6 5 4 8 8 C 1.53178 * 109.52136 * 239.87565 * 2 1 3 9 9 H 1.09001 * 109.54387 * 303.00126 * 8 2 1 10 10 C 1.52999 * 109.54349 * 63.18294 * 8 2 1 11 11 N 1.46492 * 109.46927 * 184.81997 * 10 8 2 12 12 C 1.34773 * 120.00315 * 179.97438 * 11 10 8 13 13 O 1.21597 * 119.99582 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00700 * 180.02562 * 12 11 10 15 15 C 1.40201 * 120.00527 * 179.97438 * 14 12 11 16 16 C 1.40403 * 125.96916 * 0.02562 * 15 14 12 17 17 C 1.35245 * 107.86382 * 179.97438 * 16 15 14 18 18 N 1.34958 * 107.85922 * 0.02562 * 17 16 15 19 19 C 1.46499 * 125.97492 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47453 * 124.99908 * 19 18 17 21 21 H 1.08001 * 119.99543 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00167 * 180.02562 * 20 19 18 23 23 N 1.31507 * 120.00096 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99936 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47041 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.46933 * 120.00112 * 24 22 20 27 27 H 1.48494 * 109.47141 * 240.00354 * 24 22 20 28 28 N 1.31205 * 125.97309 * 179.97438 * 15 14 12 29 29 H 1.09003 * 109.46654 * 180.12910 * 1 2 3 30 30 H 1.09001 * 109.46798 * 300.11888 * 1 2 3 31 31 H 1.08990 * 109.47401 * 60.12674 * 1 2 3 32 32 H 1.09007 * 109.48433 * 297.52964 * 4 2 1 33 33 H 1.09000 * 109.48149 * 57.55710 * 4 2 1 34 34 H 1.09000 * 109.48609 * 181.13721 * 6 5 4 35 35 H 1.09009 * 109.47741 * 301.16279 * 6 5 4 36 36 H 1.08999 * 109.59821 * 182.58007 * 7 6 5 37 37 H 1.09003 * 109.44870 * 62.38893 * 7 6 5 38 38 H 1.09002 * 109.47244 * 64.82292 * 10 8 2 39 39 H 1.08997 * 109.46803 * 304.81915 * 10 8 2 40 40 H 0.97006 * 120.00365 * 0.02562 * 11 10 8 41 41 H 0.97006 * 119.99980 * 0.02562 * 14 12 11 42 42 H 1.07998 * 126.06519 * 0.24214 * 16 15 14 43 43 H 1.07999 * 126.06829 * 179.97438 * 17 16 15 44 44 H 1.09000 * 109.47073 * 244.99937 * 19 18 17 45 45 H 1.09001 * 109.47506 * 4.99854 * 19 18 17 46 46 H 0.97004 * 120.00286 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0429 -0.7246 1.2472 5 8 3.4708 -0.7726 1.2152 6 6 4.0058 -1.4792 0.0942 7 6 3.5717 -0.7869 -1.2006 8 6 2.0419 -0.7246 -1.2487 9 1 1.6364 -1.7360 -1.2753 10 6 1.5998 0.0372 -2.4998 11 7 1.9903 -0.7164 -3.6938 12 6 1.7018 -0.2347 -4.9190 13 8 1.1170 0.8252 -5.0333 14 7 2.0606 -0.9282 -6.0175 15 6 1.7600 -0.4274 -7.2920 16 6 1.0937 0.7771 -7.5687 17 6 0.9996 0.9001 -8.9123 18 7 1.5821 -0.1827 -9.4688 19 6 1.7015 -0.4537 -10.9035 20 6 3.1492 -0.6857 -11.2522 21 1 3.9047 -0.6358 -10.4820 22 6 3.5092 -0.9606 -12.5544 23 7 2.5894 -1.0198 -13.4924 24 14 5.3038 -1.2474 -12.9867 25 1 6.1336 -1.1258 -11.7611 26 1 5.4636 -2.6082 -13.5591 27 1 5.7405 -0.2367 -13.9831 28 7 2.0530 -1.0018 -8.4347 29 1 -0.3633 -1.0277 0.0023 30 1 -0.3633 0.5157 0.8889 31 1 -0.3633 0.5118 -0.8910 32 1 1.7172 -0.1886 2.1388 33 1 1.6453 -1.7393 1.2674 34 1 5.0941 -1.4869 0.1549 35 1 3.6341 -2.5039 0.0993 36 1 3.9405 -1.3501 -2.0578 37 1 3.9784 0.2241 -1.2255 38 1 2.0773 1.0170 -2.5163 39 1 0.5170 0.1608 -2.4861 40 1 2.4559 -1.5625 -3.6026 41 1 2.5261 -1.7744 -5.9263 42 1 0.7258 1.4825 -6.8383 43 1 0.5394 1.7189 -9.4452 44 1 1.1205 -1.3409 -11.1553 45 1 1.3243 0.3996 -11.4671 46 1 2.8427 -1.2129 -14.4087 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287210568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:17 Heat of formation + Delta-G solvation = -27.336794 kcal Electronic energy + Delta-G solvation = -26530.597610 eV Core-core repulsion = 22648.903267 eV Total energy + Delta-G solvation = -3881.694344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.22254 -41.13167 -40.35803 -37.10343 -36.13549 -35.30149 -34.77238 -33.03561 -32.49111 -30.93262 -29.01052 -28.21586 -27.50918 -25.11706 -23.99629 -23.31507 -22.70189 -21.92004 -21.41030 -20.82063 -19.16585 -18.68992 -18.24161 -17.35875 -17.09842 -16.83622 -16.73877 -16.41614 -16.12542 -15.76414 -15.62886 -15.39250 -15.29173 -14.66550 -14.46851 -14.33991 -14.18727 -13.79533 -13.66594 -13.45168 -13.07723 -12.92744 -12.86985 -12.80337 -12.72656 -12.30422 -12.09339 -12.03866 -11.85724 -11.64150 -11.43291 -11.37157 -11.20209 -11.09710 -10.72091 -10.41402 -10.17431 -9.71497 -9.04526 -8.32509 -6.46549 1.07950 1.14703 1.37499 1.38828 1.52013 1.71055 2.12319 2.36349 2.41815 2.98909 3.00367 3.15607 3.60948 3.70465 3.75637 3.95896 3.99053 4.28771 4.30747 4.35104 4.47269 4.51683 4.55848 4.67228 4.75716 4.80946 4.81587 4.87411 4.89725 4.93215 4.95929 5.01467 5.03500 5.13345 5.17558 5.19690 5.35408 5.41393 5.51909 5.57590 5.77065 5.88787 5.98317 6.30024 6.30475 6.64438 6.76843 7.15662 7.23359 7.43577 8.75106 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024177 B = 0.002069 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.861214 B =13531.604064 C =14457.105463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 H 0.073 0.927 4 C 0.065 3.935 5 O -0.406 6.406 6 C 0.057 3.943 7 C -0.151 4.151 8 C -0.088 4.088 9 H 0.094 0.906 10 C 0.146 3.854 11 N -0.720 5.720 12 C 0.711 3.289 13 O -0.603 6.603 14 N -0.636 5.636 15 C 0.285 3.715 16 C -0.293 4.293 17 C 0.056 3.944 18 N -0.345 5.345 19 C 0.272 3.728 20 C -0.546 4.546 21 H 0.052 0.948 22 C 0.017 3.983 23 N -0.921 5.921 24 Si 0.973 3.027 25 H -0.275 1.275 26 H -0.273 1.273 27 H -0.270 1.270 28 N -0.347 5.347 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.413 0.587 41 H 0.421 0.579 42 H 0.166 0.834 43 H 0.201 0.799 44 H 0.022 0.978 45 H 0.059 0.941 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 -1.210 29.424 29.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 H 0.092 0.908 4 C -0.012 4.012 5 O -0.325 6.325 6 C -0.019 4.019 7 C -0.189 4.189 8 C -0.106 4.106 9 H 0.113 0.887 10 C 0.022 3.978 11 N -0.377 5.377 12 C 0.410 3.590 13 O -0.481 6.481 14 N -0.288 5.288 15 C 0.029 3.971 16 C -0.325 4.325 17 C -0.092 4.092 18 N -0.127 5.127 19 C 0.153 3.847 20 C -0.584 4.584 21 H 0.070 0.930 22 C -0.183 4.183 23 N -0.559 5.559 24 Si 0.797 3.203 25 H -0.199 1.199 26 H -0.198 1.198 27 H -0.196 1.196 28 N -0.178 5.178 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.250 0.750 41 H 0.258 0.742 42 H 0.183 0.817 43 H 0.217 0.783 44 H 0.040 0.960 45 H 0.076 0.924 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.564 -1.226 28.638 28.707 hybrid contribution 0.630 -0.280 -0.526 0.867 sum -0.934 -1.506 28.112 28.168 Atomic orbital electron populations 1.21829 0.93466 1.02772 1.02607 1.21693 0.97020 1.00315 0.94412 0.90847 1.22754 0.80137 1.00388 0.97903 1.87923 1.21455 1.76894 1.46271 1.22697 0.99625 0.94886 0.84679 1.22282 0.95168 1.02292 0.99164 1.21442 0.95924 1.00478 0.92793 0.88736 1.21376 1.00246 0.94528 0.81623 1.44879 1.63339 1.26749 1.02734 1.15803 0.79446 0.83100 0.80668 1.90842 1.47565 1.23982 1.85675 1.41376 1.61176 1.25684 1.00583 1.19085 0.98603 0.94179 0.85249 1.21682 1.14497 1.01277 0.95004 1.23150 0.98673 0.93243 0.94172 1.48812 1.42051 1.15212 1.06647 1.19339 0.97767 0.97556 0.69996 1.21425 0.92562 1.50114 0.94267 0.92986 1.25752 1.02747 0.94228 0.95605 1.69999 1.34986 1.48784 1.02178 0.85286 0.78684 0.78287 0.78060 1.19926 1.19815 1.19551 1.77238 1.26840 1.20153 0.93613 0.91669 0.91437 0.92471 0.88022 0.91991 0.88292 0.91859 0.89534 0.91888 0.92612 0.91317 0.75016 0.74197 0.81669 0.78261 0.96038 0.92366 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.93 71.98 0.64 -0.65 16 2 C -0.12 -1.15 2.41 -10.70 -0.03 -1.17 16 3 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 4 C 0.06 0.64 6.13 72.01 0.44 1.08 16 5 O -0.41 -5.90 10.77 -148.98 -1.60 -7.50 16 6 C 0.06 0.59 6.84 72.02 0.49 1.08 16 7 C -0.15 -1.53 5.26 30.69 0.16 -1.37 16 8 C -0.09 -0.87 1.80 -10.67 -0.02 -0.89 16 9 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 10 C 0.15 2.26 4.91 86.38 0.42 2.69 16 11 N -0.72 -12.49 5.32 -478.55 -2.55 -15.04 16 12 C 0.71 19.87 8.53 179.06 1.53 21.40 16 13 O -0.60 -21.42 13.47 -4.02 -0.05 -21.47 16 14 N -0.64 -19.09 5.45 -321.23 -1.75 -20.84 16 15 C 0.28 11.47 8.11 133.31 1.08 12.55 16 16 C -0.29 -11.73 9.61 22.11 0.21 -11.52 16 17 C 0.06 2.25 11.44 83.52 0.96 3.21 16 18 N -0.35 -16.39 3.67 -351.85 -1.29 -17.68 16 19 C 0.27 14.21 6.26 85.63 0.54 14.75 16 20 C -0.55 -30.92 9.24 25.60 0.24 -30.68 16 21 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 22 C 0.02 0.94 5.46 84.66 0.46 1.40 16 23 N -0.92 -52.25 13.29 21.45 0.28 -51.97 16 24 Si 0.97 43.68 29.54 68.60 2.03 45.70 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 N -0.35 -16.24 12.42 -54.43 -0.68 -16.92 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.62 6.42 -2.39 -0.02 0.60 16 32 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.09 0.69 7.29 -2.39 -0.02 0.67 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.18 6.30 -2.39 -0.02 1.16 16 40 H 0.41 4.48 7.70 -92.70 -0.71 3.76 16 41 H 0.42 9.85 8.84 -92.70 -0.82 9.03 16 42 H 0.17 6.48 5.91 -2.91 -0.02 6.46 16 43 H 0.20 6.34 8.06 -2.91 -0.02 6.32 16 44 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 46 H 0.27 14.41 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -72.71 374.44 0.99 -71.72 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -0.53 Total: 22.13 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 7.13 Total: 11.87 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -5.98 Total: -122.44 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -1.66 Total: -28.97 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -72.71 0.99 -71.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287210568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.384 kcal (2) G-P(sol) polarization free energy of solvation -72.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds