Wall clock time and date at job start Tue Mar 31 2020 14:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.56894 * 2 1 4 4 C 1.53091 * 109.51673 * 120.15232 * 2 1 3 5 5 O 1.42904 * 109.41328 * 62.30258 * 4 2 1 6 6 C 1.42904 * 114.09798 * 61.15466 * 5 4 2 7 7 C 1.53089 * 109.41549 * 298.84031 * 6 5 4 8 8 C 1.53177 * 109.52366 * 239.84182 * 2 1 3 9 9 H 1.08999 * 109.61479 * 177.16905 * 8 2 1 10 10 C 1.52995 * 109.54566 * 56.94386 * 8 2 1 11 11 N 1.46494 * 109.47240 * 175.44378 * 10 8 2 12 12 C 1.34780 * 120.00332 * 179.97438 * 11 10 8 13 13 O 1.21596 * 119.99507 * 0.02562 * 12 11 10 14 14 N 1.34768 * 120.00292 * 180.02562 * 12 11 10 15 15 C 1.40201 * 120.00142 * 180.02562 * 14 12 11 16 16 C 1.40396 * 125.97176 * 359.97438 * 15 14 12 17 17 C 1.35243 * 107.86896 * 179.97438 * 16 15 14 18 18 N 1.34962 * 107.85356 * 0.22585 * 17 16 15 19 19 C 1.46501 * 125.97082 * 179.76577 * 18 17 16 20 20 C 1.50703 * 109.46706 * 125.00181 * 19 18 17 21 21 H 1.07992 * 120.00189 * 0.02562 * 20 19 18 22 22 C 1.37883 * 119.99721 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99839 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00259 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.46837 * 89.99815 * 24 22 20 26 26 H 1.48493 * 109.47140 * 209.99651 * 24 22 20 27 27 H 1.48494 * 109.46790 * 329.99908 * 24 22 20 28 28 N 1.31202 * 125.97171 * 179.97438 * 15 14 12 29 29 H 1.09005 * 109.47269 * 180.15632 * 1 2 3 30 30 H 1.08998 * 109.47775 * 300.15767 * 1 2 3 31 31 H 1.09009 * 109.47237 * 60.16206 * 1 2 3 32 32 H 1.08994 * 109.48641 * 302.31440 * 4 2 1 33 33 H 1.09004 * 109.47516 * 182.28245 * 4 2 1 34 34 H 1.09005 * 109.47827 * 178.85977 * 6 5 4 35 35 H 1.09001 * 109.48993 * 58.83105 * 6 5 4 36 36 H 1.09002 * 109.52237 * 297.70799 * 7 6 5 37 37 H 1.08998 * 109.52191 * 177.51759 * 7 6 5 38 38 H 1.08998 * 109.47062 * 55.43988 * 10 8 2 39 39 H 1.09009 * 109.46975 * 295.44397 * 10 8 2 40 40 H 0.96998 * 120.00015 * 359.97438 * 11 10 8 41 41 H 0.96998 * 120.00056 * 359.97438 * 14 12 11 42 42 H 1.08003 * 126.06768 * 359.93842 * 16 15 14 43 43 H 1.08002 * 126.06857 * 179.97438 * 17 16 15 44 44 H 1.09000 * 109.47836 * 245.00121 * 19 18 17 45 45 H 1.08997 * 109.47518 * 5.00660 * 19 18 17 46 46 H 0.96996 * 120.00319 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0415 -0.7248 1.2477 5 8 1.6097 -2.0867 1.2164 6 6 2.0970 -2.8277 0.0958 7 6 1.5877 -2.1873 -1.1981 8 6 2.0419 -0.7253 -1.2483 9 1 3.1307 -0.6825 -1.2756 10 6 1.4718 -0.0549 -2.4998 11 7 2.0468 -0.6796 -3.6935 12 6 1.6877 -0.2489 -4.9190 13 8 0.8866 0.6586 -5.0338 14 7 2.2163 -0.8240 -6.0172 15 6 1.8431 -0.3756 -7.2921 16 6 0.9338 0.6576 -7.5694 17 6 0.8471 0.7846 -8.9130 18 7 1.6644 -0.1343 -9.4691 19 6 1.8707 -0.3464 -10.9039 20 6 3.3411 -0.2497 -11.2195 21 1 4.0509 -0.0506 -10.4303 22 6 3.7803 -0.4164 -12.5159 23 7 5.0636 -0.3325 -12.7913 24 14 2.5527 -0.7615 -13.8809 25 1 2.0895 0.5223 -14.4662 26 1 3.2024 -1.5804 -14.9356 27 1 1.3904 -1.5006 -13.3261 28 7 2.2825 -0.8481 -8.4345 29 1 -0.3634 -1.0277 0.0028 30 1 -0.3634 0.5162 0.8885 31 1 -0.3634 0.5113 -0.8915 32 1 1.6452 -0.2382 2.1389 33 1 3.1307 -0.6891 1.2678 34 1 1.7407 -3.8560 0.1573 35 1 3.1870 -2.8197 0.1009 36 1 0.4989 -2.2315 -1.2223 37 1 1.9942 -2.7246 -2.0549 38 1 1.7210 1.0062 -2.4891 39 1 0.3882 -0.1734 -2.5138 40 1 2.6861 -1.4033 -3.6019 41 1 2.8556 -1.5477 -5.9256 42 1 0.3981 1.2461 -6.8392 43 1 0.2301 1.4926 -9.4463 44 1 1.5037 -1.3345 -11.1817 45 1 1.3278 0.4139 -11.4654 46 1 5.3726 -0.4494 -13.7033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287210573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:21 Heat of formation + Delta-G solvation = 4.153461 kcal Electronic energy + Delta-G solvation = -26623.744175 eV Core-core repulsion = 22743.415351 eV Total energy + Delta-G solvation = -3880.328824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.85141 -40.37305 -39.42579 -36.30242 -34.70840 -33.96264 -33.20837 -32.09943 -31.16363 -29.38703 -28.17644 -27.22365 -26.84034 -23.62916 -23.51689 -22.53669 -21.58212 -20.43911 -19.92477 -19.29649 -18.02950 -17.11215 -16.81242 -16.60782 -16.34176 -16.11238 -15.72406 -15.43858 -15.08442 -14.72281 -14.50282 -14.21947 -14.01155 -13.70243 -13.31678 -13.14919 -13.02726 -12.79034 -12.52506 -12.30067 -12.26024 -12.13163 -11.95156 -11.58710 -11.35854 -11.14367 -10.95121 -10.77302 -10.63967 -10.59570 -10.11107 -9.99206 -9.88527 -9.75371 -9.51690 -9.23483 -8.76082 -8.15700 -7.46340 -6.22994 -4.25062 2.34952 2.60905 3.07053 3.15738 3.22962 3.23678 3.45395 3.52387 3.80636 4.13339 4.18557 4.23398 4.25057 4.34453 4.51315 4.68961 4.83250 4.93696 5.04875 5.05662 5.14262 5.21642 5.23282 5.34392 5.36914 5.40627 5.50385 5.56089 5.69924 5.70990 5.72894 5.76275 6.02609 6.16579 6.26256 6.35405 6.47991 6.58547 6.73206 6.77244 6.96268 7.28675 7.44872 7.83524 7.90054 8.34795 8.57429 8.60779 8.87131 9.32101 10.89729 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.033926 B = 0.001976 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.117423 B =14167.665527 C =14558.736716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 H 0.084 0.916 4 C 0.066 3.934 5 O -0.380 6.380 6 C 0.060 3.940 7 C -0.154 4.154 8 C -0.098 4.098 9 H 0.079 0.921 10 C 0.146 3.854 11 N -0.744 5.744 12 C 0.713 3.287 13 O -0.568 6.568 14 N -0.644 5.644 15 C 0.279 3.721 16 C -0.282 4.282 17 C 0.050 3.950 18 N -0.321 5.321 19 C 0.232 3.768 20 C -0.534 4.534 21 H 0.085 0.915 22 C 0.075 3.925 23 N -0.888 5.888 24 Si 0.873 3.127 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.264 1.264 28 N -0.300 5.300 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.396 0.604 41 H 0.407 0.593 42 H 0.162 0.838 43 H 0.168 0.832 44 H 0.042 0.958 45 H 0.049 0.951 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.491 -2.152 26.806 27.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.138 4.138 3 H 0.102 0.898 4 C -0.011 4.011 5 O -0.299 6.299 6 C -0.017 4.017 7 C -0.192 4.192 8 C -0.117 4.117 9 H 0.098 0.902 10 C 0.022 3.978 11 N -0.401 5.401 12 C 0.412 3.588 13 O -0.443 6.443 14 N -0.294 5.294 15 C 0.024 3.976 16 C -0.314 4.314 17 C -0.099 4.099 18 N -0.102 5.102 19 C 0.113 3.887 20 C -0.572 4.572 21 H 0.103 0.897 22 C -0.128 4.128 23 N -0.525 5.525 24 Si 0.699 3.301 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.189 1.189 28 N -0.131 5.131 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.230 0.770 41 H 0.242 0.758 42 H 0.180 0.820 43 H 0.186 0.814 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.442 -2.265 26.006 27.145 hybrid contribution -0.034 -0.150 -0.720 0.737 sum -7.476 -2.415 25.286 26.478 Atomic orbital electron populations 1.21886 0.94038 1.02745 1.02022 1.21719 0.97574 1.00019 0.94492 0.89765 1.22617 0.98333 0.82388 0.97788 1.87943 1.74109 1.22439 1.45400 1.22586 0.98020 0.95640 0.85419 1.22317 1.02884 0.95438 0.98538 1.21465 1.00760 0.95299 0.94138 0.90226 1.21294 0.98336 0.96867 0.81352 1.45035 1.49734 1.41164 1.04174 1.15614 0.81210 0.82056 0.79889 1.90867 1.37048 1.31329 1.85083 1.41385 1.47133 1.39030 1.01829 1.18788 0.97718 0.96692 0.84372 1.21534 1.09141 1.05821 0.94870 1.22551 0.97424 0.95969 0.93947 1.48581 1.30284 1.24760 1.06622 1.20034 0.99847 0.97859 0.70941 1.21115 0.89821 1.50589 0.95641 0.89658 1.24843 0.95322 0.94424 0.98244 1.69872 1.13524 1.48760 1.20391 0.86899 0.81711 0.79106 0.82350 1.19714 1.20560 1.18862 1.77379 1.21661 1.21340 0.92731 0.91712 0.92564 0.92036 0.88711 0.93144 0.88806 0.93167 0.90251 0.90731 0.91301 0.90938 0.77040 0.75825 0.82017 0.81431 0.94075 0.93342 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.36 37.16 0.31 -0.62 16 2 C -0.12 -0.66 2.79 -90.48 -0.25 -0.91 16 3 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 4 C 0.07 0.37 6.25 37.20 0.23 0.60 16 5 O -0.38 -2.89 10.18 -35.23 -0.36 -3.25 16 6 C 0.06 0.35 6.84 37.20 0.25 0.60 16 7 C -0.15 -0.87 4.89 -26.59 -0.13 -1.00 16 8 C -0.10 -0.57 2.09 -90.44 -0.19 -0.76 16 9 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 10 C 0.15 1.21 4.49 -4.05 -0.02 1.19 16 11 N -0.74 -7.09 5.32 -65.23 -0.35 -7.43 16 12 C 0.71 10.30 8.53 -86.92 -0.74 9.56 16 13 O -0.57 -10.14 13.47 5.28 0.07 -10.07 16 14 N -0.64 -9.93 5.45 -15.51 -0.08 -10.02 16 15 C 0.28 5.60 8.11 -154.36 -1.25 4.35 16 16 C -0.28 -5.57 9.61 -39.84 -0.38 -5.96 16 17 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 18 N -0.32 -7.31 3.67 -62.56 -0.23 -7.54 16 19 C 0.23 5.53 5.33 -5.19 -0.03 5.50 16 20 C -0.53 -15.10 9.79 -34.44 -0.34 -15.43 16 21 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 22 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 23 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 24 Si 0.87 20.16 27.47 -169.99 -4.67 15.49 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 28 N -0.30 -6.91 12.42 31.44 0.39 -6.52 16 29 H 0.06 0.45 6.14 -51.93 -0.32 0.14 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.41 6.49 -51.92 -0.34 0.07 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.53 6.63 -51.93 -0.34 0.18 16 37 H 0.07 0.37 7.28 -51.93 -0.38 -0.01 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.68 6.66 -51.92 -0.35 0.33 16 40 H 0.40 2.67 7.69 -40.82 -0.31 2.35 16 41 H 0.41 5.06 8.84 -40.82 -0.36 4.70 16 42 H 0.16 3.14 5.91 -52.48 -0.31 2.83 16 43 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 44 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 45 H 0.05 1.04 7.50 -51.93 -0.39 0.66 16 46 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -35.00 366.57 -8.62 -43.62 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.87 Total: 6.14 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -2.83 Total: -0.08 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: 0.50 Total: -57.38 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.29 Total: -13.32 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.00 -8.62 -43.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287210573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.778 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds