Wall clock time and date at job start Tue Mar 31 2020 14:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.56894 * 2 1 4 4 C 1.53091 * 109.51673 * 120.15232 * 2 1 3 5 5 O 1.42904 * 109.41328 * 62.30258 * 4 2 1 6 6 C 1.42904 * 114.09798 * 61.15466 * 5 4 2 7 7 C 1.53089 * 109.41549 * 298.84031 * 6 5 4 8 8 C 1.53177 * 109.52366 * 239.84182 * 2 1 3 9 9 H 1.08999 * 109.61479 * 177.16905 * 8 2 1 10 10 C 1.52995 * 109.54566 * 56.94386 * 8 2 1 11 11 N 1.46494 * 109.47240 * 175.44378 * 10 8 2 12 12 C 1.34780 * 120.00332 * 179.97438 * 11 10 8 13 13 O 1.21596 * 119.99507 * 0.02562 * 12 11 10 14 14 N 1.34768 * 120.00292 * 180.02562 * 12 11 10 15 15 C 1.40201 * 120.00142 * 180.02562 * 14 12 11 16 16 C 1.40396 * 125.97176 * 359.97438 * 15 14 12 17 17 C 1.35243 * 107.86896 * 179.97438 * 16 15 14 18 18 N 1.34962 * 107.85356 * 0.22585 * 17 16 15 19 19 C 1.46501 * 125.97082 * 179.76577 * 18 17 16 20 20 C 1.50703 * 109.46706 * 125.00181 * 19 18 17 21 21 H 1.07992 * 120.00189 * 0.02562 * 20 19 18 22 22 C 1.37883 * 119.99721 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99839 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00259 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.46837 * 89.99815 * 24 22 20 26 26 H 1.48493 * 109.47140 * 209.99651 * 24 22 20 27 27 H 1.48494 * 109.46790 * 329.99908 * 24 22 20 28 28 N 1.31202 * 125.97171 * 179.97438 * 15 14 12 29 29 H 1.09005 * 109.47269 * 180.15632 * 1 2 3 30 30 H 1.08998 * 109.47775 * 300.15767 * 1 2 3 31 31 H 1.09009 * 109.47237 * 60.16206 * 1 2 3 32 32 H 1.08994 * 109.48641 * 302.31440 * 4 2 1 33 33 H 1.09004 * 109.47516 * 182.28245 * 4 2 1 34 34 H 1.09005 * 109.47827 * 178.85977 * 6 5 4 35 35 H 1.09001 * 109.48993 * 58.83105 * 6 5 4 36 36 H 1.09002 * 109.52237 * 297.70799 * 7 6 5 37 37 H 1.08998 * 109.52191 * 177.51759 * 7 6 5 38 38 H 1.08998 * 109.47062 * 55.43988 * 10 8 2 39 39 H 1.09009 * 109.46975 * 295.44397 * 10 8 2 40 40 H 0.96998 * 120.00015 * 359.97438 * 11 10 8 41 41 H 0.96998 * 120.00056 * 359.97438 * 14 12 11 42 42 H 1.08003 * 126.06768 * 359.93842 * 16 15 14 43 43 H 1.08002 * 126.06857 * 179.97438 * 17 16 15 44 44 H 1.09000 * 109.47836 * 245.00121 * 19 18 17 45 45 H 1.08997 * 109.47518 * 5.00660 * 19 18 17 46 46 H 0.96996 * 120.00319 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0415 -0.7248 1.2477 5 8 1.6097 -2.0867 1.2164 6 6 2.0970 -2.8277 0.0958 7 6 1.5877 -2.1873 -1.1981 8 6 2.0419 -0.7253 -1.2483 9 1 3.1307 -0.6825 -1.2756 10 6 1.4718 -0.0549 -2.4998 11 7 2.0468 -0.6796 -3.6935 12 6 1.6877 -0.2489 -4.9190 13 8 0.8866 0.6586 -5.0338 14 7 2.2163 -0.8240 -6.0172 15 6 1.8431 -0.3756 -7.2921 16 6 0.9338 0.6576 -7.5694 17 6 0.8471 0.7846 -8.9130 18 7 1.6644 -0.1343 -9.4691 19 6 1.8707 -0.3464 -10.9039 20 6 3.3411 -0.2497 -11.2195 21 1 4.0509 -0.0506 -10.4303 22 6 3.7803 -0.4164 -12.5159 23 7 5.0636 -0.3325 -12.7913 24 14 2.5527 -0.7615 -13.8809 25 1 2.0895 0.5223 -14.4662 26 1 3.2024 -1.5804 -14.9356 27 1 1.3904 -1.5006 -13.3261 28 7 2.2825 -0.8481 -8.4345 29 1 -0.3634 -1.0277 0.0028 30 1 -0.3634 0.5162 0.8885 31 1 -0.3634 0.5113 -0.8915 32 1 1.6452 -0.2382 2.1389 33 1 3.1307 -0.6891 1.2678 34 1 1.7407 -3.8560 0.1573 35 1 3.1870 -2.8197 0.1009 36 1 0.4989 -2.2315 -1.2223 37 1 1.9942 -2.7246 -2.0549 38 1 1.7210 1.0062 -2.4891 39 1 0.3882 -0.1734 -2.5138 40 1 2.6861 -1.4033 -3.6019 41 1 2.8556 -1.5477 -5.9256 42 1 0.3981 1.2461 -6.8392 43 1 0.2301 1.4926 -9.4463 44 1 1.5037 -1.3345 -11.1817 45 1 1.3278 0.4139 -11.4654 46 1 5.3726 -0.4494 -13.7033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287210573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:20 Heat of formation + Delta-G solvation = -21.130473 kcal Electronic energy + Delta-G solvation = -26624.840568 eV Core-core repulsion = 22743.415351 eV Total energy + Delta-G solvation = -3881.425218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.24607 -41.20250 -40.45246 -37.06517 -36.13219 -35.23143 -34.64207 -33.06730 -32.49821 -30.96942 -29.27031 -28.40110 -27.62294 -24.80579 -24.09172 -23.84486 -22.76233 -21.88359 -21.32238 -19.95559 -19.14060 -19.03973 -18.22936 -17.36127 -17.22347 -16.90945 -16.75481 -16.47032 -16.05054 -15.92891 -15.74930 -15.40197 -15.08730 -14.84412 -14.62372 -14.32477 -14.05859 -13.82336 -13.79184 -13.66882 -13.36587 -12.98471 -12.75959 -12.52716 -12.44448 -12.30838 -12.07627 -11.87327 -11.82781 -11.62953 -11.48546 -11.40352 -11.12720 -11.05831 -10.86206 -10.36985 -10.19405 -9.73002 -9.03056 -8.36798 -6.46856 1.05171 1.13590 1.37329 1.40610 1.50184 1.69996 2.10620 2.29681 2.40790 2.95617 3.02858 3.14678 3.61189 3.72543 3.79910 3.94161 4.04659 4.22005 4.25050 4.34917 4.40833 4.57337 4.61833 4.62841 4.74207 4.76051 4.81735 4.84052 4.85938 4.87405 4.92704 4.94421 5.01616 5.12035 5.21082 5.22408 5.25821 5.27591 5.48485 5.51879 5.81579 5.93376 6.02846 6.33659 6.42489 6.58321 6.73135 7.12709 7.16341 7.42382 8.80255 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.033926 B = 0.001976 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.117423 B =14167.665527 C =14558.736716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 H 0.093 0.907 4 C 0.064 3.936 5 O -0.401 6.401 6 C 0.058 3.942 7 C -0.152 4.152 8 C -0.088 4.088 9 H 0.093 0.907 10 C 0.147 3.853 11 N -0.721 5.721 12 C 0.711 3.289 13 O -0.602 6.602 14 N -0.638 5.638 15 C 0.284 3.716 16 C -0.294 4.294 17 C 0.060 3.940 18 N -0.345 5.345 19 C 0.239 3.761 20 C -0.546 4.546 21 H 0.026 0.974 22 C 0.013 3.987 23 N -0.942 5.942 24 Si 0.956 3.044 25 H -0.253 1.253 26 H -0.281 1.281 27 H -0.239 1.239 28 N -0.350 5.350 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.412 0.588 41 H 0.420 0.580 42 H 0.167 0.833 43 H 0.210 0.790 44 H 0.046 0.954 45 H 0.082 0.918 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.025 -2.263 27.115 28.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 H 0.111 0.889 4 C -0.013 4.013 5 O -0.320 6.320 6 C -0.018 4.018 7 C -0.189 4.189 8 C -0.107 4.107 9 H 0.111 0.889 10 C 0.023 3.977 11 N -0.378 5.378 12 C 0.410 3.590 13 O -0.480 6.480 14 N -0.290 5.290 15 C 0.028 3.972 16 C -0.325 4.325 17 C -0.087 4.087 18 N -0.127 5.127 19 C 0.120 3.880 20 C -0.584 4.584 21 H 0.045 0.955 22 C -0.186 4.186 23 N -0.581 5.581 24 Si 0.777 3.223 25 H -0.178 1.178 26 H -0.207 1.207 27 H -0.162 1.162 28 N -0.181 5.181 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.249 0.751 41 H 0.257 0.743 42 H 0.184 0.816 43 H 0.227 0.773 44 H 0.063 0.937 45 H 0.099 0.901 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.961 -2.402 26.397 27.979 hybrid contribution 0.504 -0.084 -0.609 0.795 sum -8.457 -2.486 25.787 27.252 Atomic orbital electron populations 1.21856 0.94706 1.02054 1.01895 1.21720 0.96965 1.00524 0.94365 0.88876 1.22717 0.98984 0.81655 0.97930 1.87919 1.74633 1.23346 1.46139 1.22675 0.98635 0.95729 0.84806 1.22293 1.02216 0.95356 0.99074 1.21409 1.01318 0.95178 0.92813 0.88920 1.21386 0.97952 0.96762 0.81591 1.44912 1.49152 1.40927 1.02789 1.15798 0.80845 0.81692 0.80650 1.90835 1.38590 1.32883 1.85675 1.41410 1.47440 1.39435 1.00702 1.19130 0.96711 0.96088 0.85228 1.21725 1.09445 1.06047 0.95300 1.23240 0.96294 0.95108 0.94100 1.48484 1.31779 1.26220 1.06262 1.19883 0.96819 0.99059 0.72283 1.21233 0.91685 1.50892 0.94586 0.95547 1.25937 0.97631 0.93643 1.01360 1.70050 1.16380 1.50267 1.21418 0.85606 0.79092 0.79844 0.77778 1.17763 1.20660 1.16236 1.77296 1.23682 1.23291 0.93781 0.92665 0.92056 0.92791 0.88012 0.92113 0.88341 0.92096 0.91408 0.89811 0.91976 0.91869 0.75075 0.74303 0.81564 0.77294 0.93666 0.90064 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.36 71.98 0.60 -1.14 16 2 C -0.12 -1.12 2.79 -10.70 -0.03 -1.15 16 3 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 4 C 0.06 0.61 6.25 72.01 0.45 1.06 16 5 O -0.40 -5.54 10.18 -148.98 -1.52 -7.06 16 6 C 0.06 0.57 6.84 72.01 0.49 1.07 16 7 C -0.15 -1.48 4.89 30.68 0.15 -1.33 16 8 C -0.09 -0.88 2.09 -10.68 -0.02 -0.90 16 9 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 10 C 0.15 2.27 4.49 86.38 0.39 2.66 16 11 N -0.72 -12.73 5.32 -478.54 -2.54 -15.27 16 12 C 0.71 20.00 8.53 179.06 1.53 21.53 16 13 O -0.60 -21.24 13.47 -4.02 -0.05 -21.29 16 14 N -0.64 -19.44 5.45 -321.24 -1.75 -21.19 16 15 C 0.28 11.43 8.11 133.31 1.08 12.51 16 16 C -0.29 -11.40 9.61 22.10 0.21 -11.19 16 17 C 0.06 2.26 11.44 83.52 0.96 3.22 16 18 N -0.35 -15.60 3.67 -351.84 -1.29 -16.89 16 19 C 0.24 11.12 5.33 85.63 0.46 11.58 16 20 C -0.55 -31.59 9.79 25.60 0.25 -31.34 16 21 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 22 C 0.01 0.74 5.47 84.66 0.46 1.20 16 23 N -0.94 -58.10 13.96 21.45 0.30 -57.80 16 24 Si 0.96 40.72 27.47 68.60 1.88 42.60 16 25 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 26 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 27 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 28 N -0.35 -16.33 12.42 -54.44 -0.68 -17.01 16 29 H 0.05 0.76 6.14 -2.38 -0.01 0.74 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.70 6.49 -2.38 -0.02 0.69 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.07 0.85 6.63 -2.39 -0.02 0.83 16 37 H 0.08 0.65 7.28 -2.39 -0.02 0.64 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 1.14 6.66 -2.38 -0.02 1.13 16 40 H 0.41 4.71 7.69 -92.71 -0.71 4.00 16 41 H 0.42 10.24 8.84 -92.71 -0.82 9.42 16 42 H 0.17 6.32 5.91 -2.91 -0.02 6.31 16 43 H 0.21 5.74 8.06 -2.91 -0.02 5.72 16 44 H 0.05 2.06 7.20 -2.39 -0.02 2.04 16 45 H 0.08 3.24 7.50 -2.39 -0.02 3.22 16 46 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -79.18 366.57 0.75 -78.43 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: -0.57 Total: 27.73 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 6.98 Total: 7.76 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -5.96 Total: -128.17 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -1.57 Total: -28.35 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.88 Total: 42.60 kcal Total: -79.18 0.75 -78.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287210573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.297 kcal (2) G-P(sol) polarization free energy of solvation -79.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds