Wall clock time and date at job start Tue Mar 31 2020 14:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.51852 * 2 1 4 4 C 1.53095 * 109.52293 * 239.81292 * 2 1 3 5 5 O 1.42895 * 109.41170 * 297.70227 * 4 2 1 6 6 C 1.42905 * 114.09712 * 298.84016 * 5 4 2 7 7 C 1.53099 * 109.48515 * 61.11511 * 6 5 4 8 8 C 1.53169 * 109.16096 * 302.52320 * 7 6 5 9 9 H 1.09008 * 109.54447 * 296.94126 * 8 7 6 10 10 C 1.52990 * 109.54833 * 176.76133 * 8 7 6 11 11 N 1.46499 * 109.47304 * 65.17523 * 10 8 7 12 12 C 1.34777 * 120.00195 * 179.97438 * 11 10 8 13 13 O 1.21593 * 119.99953 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99726 * 180.27548 * 12 11 10 15 15 C 1.40196 * 119.99786 * 179.72659 * 14 12 11 16 16 C 1.40403 * 125.97359 * 359.71533 * 15 14 12 17 17 C 1.35241 * 107.87063 * 179.86373 * 16 15 14 18 18 N 1.34964 * 107.85494 * 0.39738 * 17 16 15 19 19 C 1.46503 * 125.97594 * 179.77167 * 18 17 16 20 20 C 1.50699 * 109.47390 * 124.99860 * 19 18 17 21 21 H 1.07999 * 119.99655 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00017 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00184 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00074 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46798 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46922 * 120.00482 * 24 22 20 27 27 H 1.48495 * 109.47083 * 240.00536 * 24 22 20 28 28 N 1.31207 * 125.97268 * 180.02562 * 15 14 12 29 29 H 1.09007 * 109.47313 * 299.87614 * 1 2 3 30 30 H 1.09002 * 109.47540 * 59.87573 * 1 2 3 31 31 H 1.09007 * 109.47245 * 179.87138 * 1 2 3 32 32 H 1.09007 * 109.47752 * 57.68328 * 4 2 1 33 33 H 1.08996 * 109.47638 * 177.70571 * 4 2 1 34 34 H 1.09007 * 109.47628 * 181.14643 * 6 5 4 35 35 H 1.08998 * 109.48176 * 301.16092 * 6 5 4 36 36 H 1.09008 * 109.59491 * 182.57409 * 7 6 5 37 37 H 1.09003 * 109.45283 * 62.39045 * 7 6 5 38 38 H 1.08998 * 109.47186 * 305.17773 * 10 8 7 39 39 H 1.09002 * 109.47663 * 185.18056 * 10 8 7 40 40 H 0.97000 * 120.00069 * 0.02562 * 11 10 8 41 41 H 0.97000 * 120.00483 * 359.73178 * 14 12 11 42 42 H 1.08001 * 126.06563 * 0.02562 * 16 15 14 43 43 H 1.08002 * 126.07341 * 180.16592 * 17 16 15 44 44 H 1.09001 * 109.47317 * 244.99889 * 19 18 17 45 45 H 1.08997 * 109.47045 * 4.99523 * 19 18 17 46 46 H 0.97007 * 120.00232 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7255 -1.2472 5 8 1.6098 -2.0873 -1.2152 6 6 2.0971 -2.8276 -0.0941 7 6 1.5895 -2.1871 1.2005 8 6 2.0418 -0.7246 1.2487 9 1 3.1307 -0.6802 1.2753 10 6 1.4716 -0.0534 2.4997 11 7 2.0514 -0.6732 3.6938 12 6 1.6938 -0.2403 4.9190 13 8 0.8895 0.6644 5.0334 14 7 2.2315 -0.8069 6.0174 15 6 1.8638 -0.3527 7.2918 16 6 0.9563 0.6823 7.5684 17 6 0.8725 0.8127 8.9119 18 7 1.7003 -0.0965 9.4683 19 6 1.9203 -0.2957 10.9030 20 6 1.6564 -1.7366 11.2564 21 1 1.3554 -2.4344 10.4890 22 6 1.8003 -2.1644 12.5592 23 7 2.1673 -1.3148 13.4935 24 14 1.4725 -3.9505 12.9974 25 1 1.0757 -4.6951 11.7754 26 1 2.7039 -4.5545 13.5667 27 1 0.3779 -4.0217 13.9983 28 7 2.3119 -0.8167 8.4343 29 1 -0.3634 0.5119 0.8911 30 1 -0.3634 0.5158 -0.8889 31 1 -0.3634 -1.0277 -0.0023 32 1 1.6452 -0.2394 -2.1388 33 1 3.1308 -0.6897 -1.2674 34 1 1.7407 -3.8560 -0.1551 35 1 3.1870 -2.8198 -0.0993 36 1 1.9972 -2.7230 2.0578 37 1 0.5007 -2.2328 1.2255 38 1 0.3887 -0.1760 2.5163 39 1 1.7168 1.0086 2.4862 40 1 2.6933 -1.3948 3.6026 41 1 2.8729 -1.5288 5.9262 42 1 0.4184 1.2683 6.8379 43 1 0.2558 1.5213 9.4447 44 1 2.9514 -0.0437 11.1509 45 1 1.2438 0.3465 11.4669 46 1 2.2682 -1.6157 14.4102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287210578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:24 Heat of formation + Delta-G solvation = -2.038619 kcal Electronic energy + Delta-G solvation = -26619.853275 eV Core-core repulsion = 22739.255942 eV Total energy + Delta-G solvation = -3880.597333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.80464 -40.33808 -39.38218 -36.29094 -34.65799 -33.95087 -33.27466 -32.09176 -30.85174 -29.28506 -28.10089 -27.16291 -26.48746 -23.64033 -23.56913 -22.78488 -21.55922 -20.41806 -19.92160 -19.27639 -17.98937 -16.89732 -16.63848 -16.56153 -16.33985 -16.06610 -15.65018 -15.43840 -15.06722 -14.70652 -14.40573 -14.17060 -14.01630 -13.82218 -13.34004 -13.14250 -12.80906 -12.75049 -12.32325 -12.25552 -12.20400 -11.95914 -11.77020 -11.57172 -11.34323 -11.05307 -10.94152 -10.87541 -10.60259 -10.40836 -10.25824 -10.07629 -9.88138 -9.67713 -9.47380 -9.21941 -8.63184 -8.08589 -7.39859 -6.23761 -4.28614 2.38800 2.68118 3.12891 3.22349 3.29828 3.36242 3.45856 3.61434 3.85578 4.14210 4.19784 4.25275 4.30982 4.39488 4.51682 4.68937 4.83402 4.93765 5.05725 5.11361 5.14262 5.21593 5.23419 5.34858 5.37614 5.45331 5.54592 5.58186 5.71272 5.72584 5.76763 5.82797 6.03352 6.21778 6.30522 6.55627 6.59300 6.77354 6.88554 7.01977 7.11741 7.51178 7.70610 7.83423 7.98673 8.08202 8.59990 8.67922 8.82137 9.36966 10.84921 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024668 B = 0.002065 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.798576 B =13557.901180 C =14346.277990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 H 0.084 0.916 4 C 0.066 3.934 5 O -0.380 6.380 6 C 0.060 3.940 7 C -0.154 4.154 8 C -0.097 4.097 9 H 0.079 0.921 10 C 0.146 3.854 11 N -0.745 5.745 12 C 0.713 3.287 13 O -0.567 6.567 14 N -0.644 5.644 15 C 0.275 3.725 16 C -0.286 4.286 17 C 0.051 3.949 18 N -0.321 5.321 19 C 0.258 3.742 20 C -0.527 4.527 21 H 0.069 0.931 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.282 1.282 28 N -0.308 5.308 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.395 0.605 41 H 0.406 0.594 42 H 0.160 0.840 43 H 0.167 0.833 44 H 0.045 0.955 45 H 0.057 0.943 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.682 1.376 -28.144 28.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.138 4.138 3 H 0.102 0.898 4 C -0.011 4.011 5 O -0.299 6.299 6 C -0.017 4.017 7 C -0.192 4.192 8 C -0.116 4.116 9 H 0.097 0.903 10 C 0.022 3.978 11 N -0.402 5.402 12 C 0.412 3.588 13 O -0.443 6.443 14 N -0.294 5.294 15 C 0.021 3.979 16 C -0.318 4.318 17 C -0.099 4.099 18 N -0.103 5.103 19 C 0.141 3.859 20 C -0.565 4.565 21 H 0.087 0.913 22 C -0.142 4.142 23 N -0.534 5.534 24 Si 0.735 3.265 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.208 1.208 28 N -0.139 5.139 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.229 0.771 41 H 0.240 0.760 42 H 0.178 0.822 43 H 0.185 0.815 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.636 1.301 -27.300 27.338 hybrid contribution 0.215 -0.942 0.270 1.003 sum 0.851 0.359 -27.030 27.046 Atomic orbital electron populations 1.21888 0.94022 1.02777 1.02032 1.21721 0.97601 0.99984 0.94491 0.89785 1.22613 0.98298 0.82410 0.97796 1.87944 1.74119 1.22445 1.45355 1.22585 0.97985 0.95664 0.85420 1.22318 1.02949 0.95415 0.98520 1.21459 1.00702 0.95313 0.94153 0.90285 1.21289 0.98329 0.96870 0.81356 1.45038 1.49507 1.41421 1.04203 1.15621 0.81240 0.82088 0.79883 1.90870 1.36833 1.31501 1.85064 1.41383 1.46846 1.39230 1.01928 1.18783 0.98297 0.96480 0.84296 1.21509 1.09281 1.06070 0.94920 1.22555 0.97227 0.96288 0.93847 1.49050 1.30127 1.23805 1.07280 1.19737 0.98744 0.99078 0.68378 1.21301 1.47167 0.93782 0.94253 0.91266 1.24952 0.94730 0.98595 0.95900 1.69929 1.46832 1.34781 1.01840 0.86276 0.77957 0.83836 0.78451 1.19586 1.20718 1.20765 1.77318 1.23304 1.20452 0.92847 0.92018 0.92564 0.91698 0.88716 0.93173 0.88790 0.93210 0.90701 0.90233 0.90934 0.91335 0.77093 0.75951 0.82215 0.81534 0.93759 0.92536 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.36 37.16 0.31 -0.64 16 2 C -0.12 -0.66 2.79 -90.48 -0.25 -0.92 16 3 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 4 C 0.07 0.37 6.25 37.21 0.23 0.60 16 5 O -0.38 -2.92 10.19 -35.23 -0.36 -3.27 16 6 C 0.06 0.35 6.84 37.21 0.25 0.61 16 7 C -0.15 -0.90 4.90 -26.59 -0.13 -1.03 16 8 C -0.10 -0.57 2.09 -90.45 -0.19 -0.76 16 9 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 10 C 0.15 1.22 4.48 -4.05 -0.02 1.20 16 11 N -0.74 -7.14 5.32 -65.23 -0.35 -7.49 16 12 C 0.71 10.40 8.53 -86.92 -0.74 9.66 16 13 O -0.57 -10.27 13.47 5.28 0.07 -10.20 16 14 N -0.64 -10.00 5.46 -15.51 -0.08 -10.09 16 15 C 0.28 5.60 8.11 -154.36 -1.25 4.35 16 16 C -0.29 -5.80 9.61 -39.83 -0.38 -6.18 16 17 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 18 N -0.32 -7.53 3.67 -62.56 -0.23 -7.76 16 19 C 0.26 6.60 6.26 -5.19 -0.03 6.57 16 20 C -0.53 -14.71 9.24 -34.44 -0.32 -15.03 16 21 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.90 -25.39 13.29 55.43 0.74 -24.66 16 24 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 N -0.31 -7.14 12.42 31.44 0.39 -6.75 16 29 H 0.06 0.42 6.50 -51.92 -0.34 0.08 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.47 6.15 -51.93 -0.32 0.15 16 32 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.39 7.29 -51.92 -0.38 0.01 16 37 H 0.08 0.55 6.64 -51.93 -0.34 0.21 16 38 H 0.07 0.70 6.67 -51.93 -0.35 0.35 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.40 2.67 7.70 -40.82 -0.31 2.35 16 41 H 0.41 5.05 8.84 -40.82 -0.36 4.69 16 42 H 0.16 3.18 5.91 -52.49 -0.31 2.87 16 43 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 44 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 46 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -33.68 370.23 -8.98 -42.65 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.90 Total: 4.77 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -2.81 Total: 0.85 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.47 Total: -56.75 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.29 Total: -13.48 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.68 -8.98 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287210578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.616 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds