Wall clock time and date at job start Tue Mar 31 2020 14:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.51852 * 2 1 4 4 C 1.53095 * 109.52293 * 239.81292 * 2 1 3 5 5 O 1.42895 * 109.41170 * 297.70227 * 4 2 1 6 6 C 1.42905 * 114.09712 * 298.84016 * 5 4 2 7 7 C 1.53099 * 109.48515 * 61.11511 * 6 5 4 8 8 C 1.53169 * 109.16096 * 302.52320 * 7 6 5 9 9 H 1.09008 * 109.54447 * 296.94126 * 8 7 6 10 10 C 1.52990 * 109.54833 * 176.76133 * 8 7 6 11 11 N 1.46499 * 109.47304 * 65.17523 * 10 8 7 12 12 C 1.34777 * 120.00195 * 179.97438 * 11 10 8 13 13 O 1.21593 * 119.99953 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99726 * 180.27548 * 12 11 10 15 15 C 1.40196 * 119.99786 * 179.72659 * 14 12 11 16 16 C 1.40403 * 125.97359 * 359.71533 * 15 14 12 17 17 C 1.35241 * 107.87063 * 179.86373 * 16 15 14 18 18 N 1.34964 * 107.85494 * 0.39738 * 17 16 15 19 19 C 1.46503 * 125.97594 * 179.77167 * 18 17 16 20 20 C 1.50699 * 109.47390 * 124.99860 * 19 18 17 21 21 H 1.07999 * 119.99655 * 0.02562 * 20 19 18 22 22 C 1.37872 * 120.00017 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00184 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00074 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46798 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46922 * 120.00482 * 24 22 20 27 27 H 1.48495 * 109.47083 * 240.00536 * 24 22 20 28 28 N 1.31207 * 125.97268 * 180.02562 * 15 14 12 29 29 H 1.09007 * 109.47313 * 299.87614 * 1 2 3 30 30 H 1.09002 * 109.47540 * 59.87573 * 1 2 3 31 31 H 1.09007 * 109.47245 * 179.87138 * 1 2 3 32 32 H 1.09007 * 109.47752 * 57.68328 * 4 2 1 33 33 H 1.08996 * 109.47638 * 177.70571 * 4 2 1 34 34 H 1.09007 * 109.47628 * 181.14643 * 6 5 4 35 35 H 1.08998 * 109.48176 * 301.16092 * 6 5 4 36 36 H 1.09008 * 109.59491 * 182.57409 * 7 6 5 37 37 H 1.09003 * 109.45283 * 62.39045 * 7 6 5 38 38 H 1.08998 * 109.47186 * 305.17773 * 10 8 7 39 39 H 1.09002 * 109.47663 * 185.18056 * 10 8 7 40 40 H 0.97000 * 120.00069 * 0.02562 * 11 10 8 41 41 H 0.97000 * 120.00483 * 359.73178 * 14 12 11 42 42 H 1.08001 * 126.06563 * 0.02562 * 16 15 14 43 43 H 1.08002 * 126.07341 * 180.16592 * 17 16 15 44 44 H 1.09001 * 109.47317 * 244.99889 * 19 18 17 45 45 H 1.08997 * 109.47045 * 4.99523 * 19 18 17 46 46 H 0.97007 * 120.00232 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7255 -1.2472 5 8 1.6098 -2.0873 -1.2152 6 6 2.0971 -2.8276 -0.0941 7 6 1.5895 -2.1871 1.2005 8 6 2.0418 -0.7246 1.2487 9 1 3.1307 -0.6802 1.2753 10 6 1.4716 -0.0534 2.4997 11 7 2.0514 -0.6732 3.6938 12 6 1.6938 -0.2403 4.9190 13 8 0.8895 0.6644 5.0334 14 7 2.2315 -0.8069 6.0174 15 6 1.8638 -0.3527 7.2918 16 6 0.9563 0.6823 7.5684 17 6 0.8725 0.8127 8.9119 18 7 1.7003 -0.0965 9.4683 19 6 1.9203 -0.2957 10.9030 20 6 1.6564 -1.7366 11.2564 21 1 1.3554 -2.4344 10.4890 22 6 1.8003 -2.1644 12.5592 23 7 2.1673 -1.3148 13.4935 24 14 1.4725 -3.9505 12.9974 25 1 1.0757 -4.6951 11.7754 26 1 2.7039 -4.5545 13.5667 27 1 0.3779 -4.0217 13.9983 28 7 2.3119 -0.8167 8.4343 29 1 -0.3634 0.5119 0.8911 30 1 -0.3634 0.5158 -0.8889 31 1 -0.3634 -1.0277 -0.0023 32 1 1.6452 -0.2394 -2.1388 33 1 3.1308 -0.6897 -1.2674 34 1 1.7407 -3.8560 -0.1551 35 1 3.1870 -2.8198 -0.0993 36 1 1.9972 -2.7230 2.0578 37 1 0.5007 -2.2328 1.2255 38 1 0.3887 -0.1760 2.5163 39 1 1.7168 1.0086 2.4862 40 1 2.6933 -1.3948 3.6026 41 1 2.8729 -1.5288 5.9262 42 1 0.4184 1.2683 6.8379 43 1 0.2558 1.5213 9.4447 44 1 2.9514 -0.0437 11.1509 45 1 1.2438 0.3465 11.4669 46 1 2.2682 -1.6157 14.4102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287210578.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:23 Heat of formation + Delta-G solvation = -24.741243 kcal Electronic energy + Delta-G solvation = -26620.837735 eV Core-core repulsion = 22739.255942 eV Total energy + Delta-G solvation = -3881.581792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.22207 -41.18882 -40.44166 -37.05511 -36.12730 -35.29431 -34.63915 -32.83923 -32.40123 -30.93206 -29.03102 -28.23849 -27.61504 -25.10809 -24.09449 -23.92265 -22.74515 -21.92259 -21.31316 -19.94014 -19.06837 -18.68916 -18.23188 -17.31707 -17.22251 -16.89088 -16.74150 -16.47000 -16.16011 -15.86428 -15.62330 -15.58919 -15.13709 -14.71348 -14.40802 -14.27407 -13.98445 -13.79534 -13.70606 -13.61475 -13.34381 -12.93377 -12.75925 -12.72853 -12.43904 -12.30390 -12.10381 -12.03374 -11.86339 -11.64177 -11.43121 -11.36734 -11.11921 -11.05461 -10.72062 -10.36572 -10.18548 -9.71412 -9.04423 -8.32467 -6.46562 1.08047 1.15167 1.37503 1.38825 1.52036 1.71265 2.12596 2.36406 2.42052 2.98928 3.03361 3.16303 3.61712 3.73020 3.80328 3.98284 4.04944 4.25301 4.28911 4.35437 4.41182 4.58054 4.63010 4.74511 4.76674 4.81955 4.84147 4.87710 4.88864 4.93649 4.95998 5.01877 5.03452 5.13333 5.21330 5.23724 5.27880 5.48867 5.52007 5.57598 5.77206 5.89005 5.98460 6.30084 6.34221 6.64491 6.77121 7.15846 7.23383 7.43999 8.75113 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024668 B = 0.002065 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.798576 B =13557.901180 C =14346.277990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 H 0.094 0.906 4 C 0.064 3.936 5 O -0.402 6.402 6 C 0.058 3.942 7 C -0.153 4.153 8 C -0.087 4.087 9 H 0.095 0.905 10 C 0.146 3.854 11 N -0.720 5.720 12 C 0.710 3.290 13 O -0.603 6.603 14 N -0.636 5.636 15 C 0.285 3.715 16 C -0.293 4.293 17 C 0.056 3.944 18 N -0.345 5.345 19 C 0.272 3.728 20 C -0.545 4.545 21 H 0.052 0.948 22 C 0.017 3.983 23 N -0.921 5.921 24 Si 0.973 3.027 25 H -0.275 1.275 26 H -0.273 1.273 27 H -0.270 1.270 28 N -0.348 5.348 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.413 0.587 41 H 0.421 0.579 42 H 0.166 0.834 43 H 0.201 0.799 44 H 0.022 0.978 45 H 0.059 0.941 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.031 0.688 -29.473 29.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.136 4.136 3 H 0.113 0.887 4 C -0.013 4.013 5 O -0.321 6.321 6 C -0.018 4.018 7 C -0.190 4.190 8 C -0.106 4.106 9 H 0.113 0.887 10 C 0.023 3.977 11 N -0.377 5.377 12 C 0.410 3.590 13 O -0.481 6.481 14 N -0.288 5.288 15 C 0.029 3.971 16 C -0.325 4.325 17 C -0.092 4.092 18 N -0.127 5.127 19 C 0.153 3.847 20 C -0.584 4.584 21 H 0.070 0.930 22 C -0.183 4.183 23 N -0.560 5.560 24 Si 0.797 3.203 25 H -0.199 1.199 26 H -0.198 1.198 27 H -0.195 1.195 28 N -0.179 5.179 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.250 0.750 41 H 0.258 0.742 42 H 0.183 0.817 43 H 0.217 0.783 44 H 0.040 0.960 45 H 0.076 0.924 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.014 0.591 -28.688 28.712 hybrid contribution 0.088 -0.675 0.529 0.862 sum 1.102 -0.084 -28.159 28.181 Atomic orbital electron populations 1.21860 0.94860 1.01991 1.01870 1.21723 0.96848 1.00585 0.94394 0.88745 1.22720 0.99041 0.81614 0.97911 1.87920 1.74677 1.23408 1.46086 1.22668 0.98686 0.95683 0.84776 1.22298 1.02152 0.95478 0.99091 1.21404 1.01412 0.95042 0.92773 0.88694 1.21382 0.97800 0.96901 0.81625 1.44899 1.48918 1.41166 1.02754 1.15809 0.80840 0.81707 0.80676 1.90840 1.38422 1.33130 1.85673 1.41380 1.47196 1.39656 1.00603 1.19086 0.97117 0.95654 0.85257 1.21681 1.09486 1.06289 0.95004 1.23152 0.96290 0.95628 0.94171 1.48816 1.31878 1.25387 1.06651 1.19339 0.97314 0.98005 0.70000 1.21424 1.47886 0.94737 0.94313 0.92985 1.25752 0.94197 1.02757 0.95630 1.70002 1.47065 1.36587 1.02301 0.85286 0.78291 0.78678 0.78063 1.19920 1.19820 1.19549 1.77238 1.24988 1.22009 0.93626 0.92843 0.92061 0.92781 0.88051 0.91974 0.88459 0.91962 0.89787 0.91618 0.92138 0.91809 0.75032 0.74205 0.81665 0.78259 0.96038 0.92365 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.36 71.98 0.60 -1.18 16 2 C -0.12 -1.09 2.79 -10.70 -0.03 -1.12 16 3 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 4 C 0.06 0.59 6.25 72.01 0.45 1.04 16 5 O -0.40 -5.54 10.19 -148.98 -1.52 -7.06 16 6 C 0.06 0.57 6.84 72.02 0.49 1.07 16 7 C -0.15 -1.51 4.90 30.68 0.15 -1.36 16 8 C -0.09 -0.84 2.09 -10.68 -0.02 -0.86 16 9 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 10 C 0.15 2.24 4.48 86.38 0.39 2.63 16 11 N -0.72 -12.45 5.32 -478.55 -2.55 -14.99 16 12 C 0.71 19.85 8.53 179.05 1.53 21.38 16 13 O -0.60 -21.40 13.47 -4.01 -0.05 -21.46 16 14 N -0.64 -19.10 5.46 -321.23 -1.75 -20.86 16 15 C 0.28 11.47 8.11 133.31 1.08 12.56 16 16 C -0.29 -11.73 9.61 22.11 0.21 -11.52 16 17 C 0.06 2.25 11.44 83.52 0.96 3.21 16 18 N -0.35 -16.40 3.67 -351.84 -1.29 -17.69 16 19 C 0.27 14.22 6.26 85.63 0.54 14.76 16 20 C -0.55 -30.92 9.24 25.60 0.24 -30.68 16 21 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 22 C 0.02 0.93 5.46 84.65 0.46 1.40 16 23 N -0.92 -52.27 13.29 21.45 0.28 -51.99 16 24 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 N -0.35 -16.26 12.42 -54.43 -0.68 -16.94 16 29 H 0.05 0.72 6.50 -2.38 -0.02 0.70 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.76 6.15 -2.38 -0.01 0.75 16 32 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.08 0.67 7.29 -2.38 -0.02 0.65 16 37 H 0.07 0.85 6.64 -2.39 -0.02 0.84 16 38 H 0.06 1.12 6.67 -2.39 -0.02 1.10 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.41 4.46 7.70 -92.71 -0.71 3.74 16 41 H 0.42 9.86 8.84 -92.71 -0.82 9.04 16 42 H 0.17 6.48 5.91 -2.91 -0.02 6.46 16 43 H 0.20 6.34 8.06 -2.91 -0.02 6.32 16 44 H 0.02 1.20 8.14 -2.39 -0.02 1.19 16 45 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 46 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 Total: -1.00 -72.64 370.23 1.00 -71.64 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -0.52 Total: 22.31 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 7.04 Total: 11.31 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -5.98 Total: -122.46 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -1.57 Total: -28.51 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -72.64 1.00 -71.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287210578.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.900 kcal (2) G-P(sol) polarization free energy of solvation -72.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds