Wall clock time and date at job start Tue Mar 31 2020 13:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00042 * 2 1 4 4 C 1.53001 * 109.47003 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47338 * 300.00418 * 3 2 1 6 6 N 1.46509 * 109.46837 * 300.00023 * 5 3 2 7 7 C 1.34777 * 119.99703 * 180.02562 * 6 5 3 8 8 O 1.21589 * 120.00263 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99754 * 179.97438 * 7 6 5 10 10 C 1.40193 * 119.99728 * 179.97438 * 9 7 6 11 11 C 1.40401 * 125.97600 * 0.02562 * 10 9 7 12 12 C 1.35244 * 107.86868 * 179.97438 * 11 10 9 13 13 N 1.34965 * 107.85999 * 359.97438 * 12 11 10 14 14 C 1.46493 * 125.97624 * 179.97438 * 13 12 11 15 15 C 1.50710 * 109.46991 * 125.02899 * 14 13 12 16 16 H 1.08002 * 119.99873 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00276 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00239 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99973 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46775 * 90.00171 * 19 17 15 21 21 H 1.48496 * 109.47273 * 209.99980 * 19 17 15 22 22 H 1.48500 * 109.47108 * 330.00230 * 19 17 15 23 23 N 1.31214 * 125.96986 * 179.97438 * 10 9 7 24 24 C 1.53004 * 109.46972 * 60.00266 * 3 2 1 25 25 C 1.52997 * 117.49786 * 133.74548 * 24 3 2 26 26 C 1.53002 * 117.49919 * 65.08813 * 24 3 2 27 27 H 1.09003 * 109.47353 * 299.99304 * 1 2 3 28 28 H 1.08997 * 109.47512 * 60.00069 * 1 2 3 29 29 H 1.09006 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46820 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47733 * 300.00093 * 4 3 2 32 32 H 1.08998 * 109.47166 * 60.00238 * 4 3 2 33 33 H 1.09000 * 109.47022 * 180.02562 * 5 3 2 34 34 H 1.08996 * 109.47225 * 59.99238 * 5 3 2 35 35 H 0.96999 * 119.99737 * 359.97438 * 6 5 3 36 36 H 0.96999 * 119.99686 * 0.02562 * 9 7 6 37 37 H 1.07998 * 126.06449 * 0.02562 * 11 10 9 38 38 H 1.07999 * 126.07092 * 180.02562 * 12 11 10 39 39 H 1.09003 * 109.47538 * 245.02631 * 14 13 12 40 40 H 1.08999 * 109.47417 * 5.03540 * 14 13 12 41 41 H 0.96997 * 120.00075 * 179.97438 * 18 17 15 42 42 H 1.08996 * 115.55044 * 279.42019 * 24 3 2 43 43 H 1.08999 * 117.50079 * 0.02562 * 25 24 3 44 44 H 1.09005 * 117.49638 * 145.02369 * 25 24 3 45 45 H 1.08999 * 117.50082 * 214.98215 * 26 24 3 46 46 H 1.09005 * 117.49862 * 359.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 1.5587 2.0648 -1.2491 6 7 1.9909 1.3377 -2.4454 7 6 1.7031 1.8228 -3.6695 8 8 1.0843 2.8635 -3.7810 9 7 2.1012 1.1543 -4.7700 10 6 1.8013 1.6586 -6.0432 11 6 1.0975 2.8422 -6.3168 12 6 1.0182 2.9768 -7.6602 13 7 1.6466 1.9216 -8.2197 14 6 1.7959 1.6711 -9.6553 15 6 3.2558 1.4938 -9.9851 16 1 3.9980 1.5606 -9.2034 17 6 3.6438 1.2463 -11.2847 18 7 4.9178 1.0921 -11.5727 19 14 2.3600 1.1300 -12.6368 20 1 2.1351 2.4758 -13.2228 21 1 2.8373 0.2032 -13.6943 22 1 1.0871 0.6187 -12.0681 23 7 2.1302 1.1073 -7.1876 24 6 1.5587 2.0647 1.2493 25 6 2.6287 2.8145 2.0454 26 6 2.0179 1.5280 2.6066 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.9787 2.1804 -0.0011 31 1 3.8575 0.6435 0.8891 32 1 3.8567 0.6439 -0.8909 33 1 2.0024 3.0604 -1.2493 34 1 0.4721 2.1508 -1.2492 35 1 2.4849 0.5077 -2.3564 36 1 2.5945 0.3238 -4.6809 37 1 0.6923 3.5247 -5.5844 38 1 0.5380 3.7855 -8.1910 39 1 1.2501 0.7669 -9.9251 40 1 1.3972 2.5170 -10.2152 41 1 5.1907 0.9176 -12.4869 42 1 0.5663 2.5120 1.1946 43 1 3.6542 2.7673 1.6789 44 1 2.3400 3.7550 2.5148 45 1 1.3277 1.6226 3.4449 46 1 2.6412 0.6338 2.6095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291225231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:20 Heat of formation + Delta-G solvation = 23.691581 kcal Electronic energy + Delta-G solvation = -26855.188447 eV Core-core repulsion = 22975.706859 eV Total energy + Delta-G solvation = -3879.481587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.25791 -41.29108 -40.30185 -37.14490 -36.32069 -35.69642 -35.16410 -33.13083 -31.83274 -30.94821 -29.09956 -28.21038 -27.05237 -25.01215 -24.16779 -23.24677 -22.75548 -21.84679 -21.37719 -20.28971 -19.26796 -19.06782 -18.27171 -17.76850 -17.30471 -16.94894 -16.54673 -16.50396 -16.13611 -15.98400 -15.68505 -15.32057 -15.15114 -14.77911 -14.58771 -14.33956 -14.01017 -13.81440 -13.76029 -13.44763 -13.38131 -12.98350 -12.66081 -12.57722 -12.52455 -12.30198 -12.08113 -11.82702 -11.66920 -11.61854 -11.47086 -11.28362 -11.15947 -11.09226 -10.86002 -10.53444 -10.25229 -9.73333 -9.03385 -8.36505 -6.46632 1.03883 1.12117 1.37335 1.40694 1.50303 1.69058 2.07472 2.29869 2.39441 2.60354 2.95877 3.08540 3.16033 3.46810 3.72892 3.87410 3.93943 4.09374 4.16911 4.21744 4.31824 4.45001 4.55805 4.59494 4.61770 4.72212 4.75971 4.79910 4.81486 4.86416 4.91379 4.94343 4.97896 5.04408 5.10884 5.15188 5.25094 5.30605 5.34349 5.41764 5.78649 5.92707 6.02938 6.21480 6.42775 6.58437 6.70919 7.11491 7.16454 7.39645 8.80587 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031477 B = 0.002104 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.312644 B =13307.565475 C =13494.301199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.382 6.382 3 C 0.142 3.858 4 C -0.146 4.146 5 C 0.119 3.881 6 N -0.717 5.717 7 C 0.713 3.287 8 O -0.600 6.600 9 N -0.638 5.638 10 C 0.284 3.716 11 C -0.293 4.293 12 C 0.061 3.939 13 N -0.345 5.345 14 C 0.239 3.761 15 C -0.546 4.546 16 H 0.026 0.974 17 C 0.013 3.987 18 N -0.942 5.942 19 Si 0.956 3.044 20 H -0.253 1.253 21 H -0.281 1.281 22 H -0.239 1.239 23 N -0.350 5.350 24 C -0.193 4.193 25 C -0.171 4.171 26 C -0.159 4.159 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.412 0.588 36 H 0.419 0.581 37 H 0.168 0.832 38 H 0.211 0.789 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.272 0.728 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.748 1.104 27.846 29.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.302 6.302 3 C 0.102 3.898 4 C -0.203 4.203 5 C -0.005 4.005 6 N -0.374 5.374 7 C 0.412 3.588 8 O -0.478 6.478 9 N -0.290 5.290 10 C 0.029 3.971 11 C -0.325 4.325 12 C -0.087 4.087 13 N -0.127 5.127 14 C 0.120 3.880 15 C -0.584 4.584 16 H 0.044 0.956 17 C -0.186 4.186 18 N -0.581 5.581 19 Si 0.777 3.223 20 H -0.177 1.177 21 H -0.207 1.207 22 H -0.163 1.163 23 N -0.181 5.181 24 C -0.212 4.212 25 C -0.207 4.207 26 C -0.196 4.196 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.249 0.751 36 H 0.256 0.744 37 H 0.185 0.815 38 H 0.228 0.772 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.475 0.839 26.980 28.607 hybrid contribution -0.024 -0.113 -0.380 0.397 sum -9.499 0.726 26.600 28.254 Atomic orbital electron populations 1.22834 0.80547 1.03386 1.00406 1.87960 1.20584 1.26835 1.94779 1.21149 0.94917 0.82830 0.90864 1.21964 0.91189 1.03635 1.03533 1.21855 1.00189 0.95930 0.82502 1.44786 1.61285 1.28674 1.02612 1.15738 0.79605 0.82902 0.80506 1.90827 1.46378 1.24949 1.85692 1.41404 1.59193 1.27634 1.00757 1.19125 0.98289 0.94586 0.85138 1.21721 1.13699 1.01683 0.95349 1.23242 0.97969 0.93466 0.94010 1.48485 1.40912 1.17065 1.06257 1.19885 0.96798 0.99127 0.72230 1.21233 0.91504 1.51049 0.94612 0.95576 1.25937 0.98051 0.93342 1.01251 1.70052 1.17853 1.49158 1.21064 0.85605 0.79256 0.79651 0.77791 1.17717 1.20661 1.16252 1.77309 1.26306 1.20612 0.93845 1.22684 1.00605 1.05378 0.92523 1.23243 0.98388 0.96496 1.02609 1.22930 1.03608 0.98052 0.95034 0.92655 0.94541 0.88884 0.89514 0.90538 0.91761 0.90549 0.91559 0.75110 0.74407 0.81515 0.77230 0.93692 0.90010 0.91904 0.87321 0.87352 0.87885 0.87988 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.31 113.37 1.17 1.49 16 2 O -0.38 -5.91 10.07 -148.98 -1.50 -7.41 16 3 C 0.14 1.89 0.61 -10.79 -0.01 1.89 16 4 C -0.15 -1.69 7.33 71.98 0.53 -1.16 16 5 C 0.12 2.10 4.22 86.38 0.36 2.47 16 6 N -0.72 -14.58 5.15 -478.52 -2.47 -17.05 16 7 C 0.71 21.01 8.53 179.05 1.53 22.54 16 8 O -0.60 -21.50 13.47 -4.00 -0.05 -21.55 16 9 N -0.64 -20.33 5.46 -321.23 -1.75 -22.08 16 10 C 0.28 11.64 8.11 133.31 1.08 12.72 16 11 C -0.29 -11.47 9.61 22.11 0.21 -11.26 16 12 C 0.06 2.30 11.44 83.52 0.96 3.25 16 13 N -0.35 -15.72 3.67 -351.84 -1.29 -17.01 16 14 C 0.24 11.19 5.33 85.64 0.46 11.65 16 15 C -0.55 -31.78 9.79 25.60 0.25 -31.53 16 16 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 17 C 0.01 0.73 5.47 84.65 0.46 1.20 16 18 N -0.94 -58.39 13.96 21.44 0.30 -58.09 16 19 Si 0.96 40.93 27.47 68.60 1.88 42.82 16 20 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 22 H -0.24 -9.24 6.54 99.48 0.65 -8.59 16 23 N -0.35 -16.57 12.42 -54.43 -0.68 -17.24 16 24 C -0.19 -2.13 3.99 -10.79 -0.04 -2.17 16 25 C -0.17 -1.53 9.66 30.62 0.30 -1.23 16 26 C -0.16 -1.49 9.86 30.62 0.30 -1.19 16 27 H 0.05 0.60 6.99 -2.39 -0.02 0.59 16 28 H 0.04 0.55 6.42 -2.39 -0.02 0.54 16 29 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.09 0.88 6.74 -2.38 -0.02 0.86 16 31 H 0.08 0.79 6.96 -2.39 -0.02 0.77 16 32 H 0.06 0.78 6.86 -2.39 -0.02 0.76 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.27 6.54 -2.39 -0.02 1.25 16 35 H 0.41 6.74 7.20 -92.71 -0.67 6.07 16 36 H 0.42 11.06 8.84 -92.71 -0.82 10.24 16 37 H 0.17 6.37 5.91 -2.91 -0.02 6.36 16 38 H 0.21 5.78 8.06 -2.91 -0.02 5.75 16 39 H 0.05 2.06 7.20 -2.39 -0.02 2.04 16 40 H 0.08 3.27 7.50 -2.39 -0.02 3.26 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 42 H 0.11 1.18 7.90 -2.39 -0.02 1.16 16 43 H 0.11 0.88 5.89 -2.39 -0.01 0.86 16 44 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.10 0.79 8.14 -2.39 -0.02 0.78 16 46 H 0.10 0.97 7.29 -2.38 -0.02 0.95 16 Total: -1.00 -77.73 371.89 1.48 -76.25 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.52 Total: 32.71 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 7.56 Total: 8.65 kcal Atomic # 7 Polarization: -125.58 SS G_CDS: -5.89 Total: -131.47 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -1.55 Total: -28.96 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.88 Total: 42.82 kcal Total: -77.73 1.48 -76.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291225231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.937 kcal (2) G-P(sol) polarization free energy of solvation -77.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds