Wall clock time and date at job start Tue Mar 31 2020 13:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00317 * 2 1 4 4 C 1.53002 * 109.47181 * 54.73328 * 3 2 1 5 5 C 1.53006 * 109.47220 * 294.73457 * 3 2 1 6 6 N 1.46502 * 109.46901 * 66.55378 * 5 3 2 7 7 C 1.34777 * 119.99990 * 186.40343 * 6 5 3 8 8 O 1.21593 * 119.99908 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00371 * 179.97438 * 7 6 5 10 10 C 1.40190 * 120.00030 * 179.97438 * 9 7 6 11 11 C 1.40394 * 125.97669 * 0.02562 * 10 9 7 12 12 C 1.35242 * 107.87039 * 179.73513 * 11 10 9 13 13 N 1.34966 * 107.85675 * 0.36634 * 12 11 10 14 14 C 1.46496 * 125.97617 * 179.89702 * 13 12 11 15 15 C 1.50700 * 109.47317 * 124.71587 * 14 13 12 16 16 H 1.08001 * 119.99660 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99868 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00390 * 359.72465 * 17 15 14 19 19 Si 1.86801 * 119.99456 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46738 * 179.72527 * 19 17 15 21 21 H 1.48498 * 109.47064 * 299.72258 * 19 17 15 22 22 H 1.48496 * 109.47388 * 59.72794 * 19 17 15 23 23 N 1.31213 * 125.97009 * 179.97438 * 10 9 7 24 24 C 1.53001 * 109.47475 * 174.73521 * 3 2 1 25 25 C 1.52997 * 117.49782 * 14.16917 * 24 3 2 26 26 C 1.53005 * 117.49662 * 305.51336 * 24 3 2 27 27 H 1.09006 * 109.46709 * 71.80558 * 1 2 3 28 28 H 1.08997 * 109.47113 * 191.80279 * 1 2 3 29 29 H 1.08993 * 109.47096 * 311.80375 * 1 2 3 30 30 H 1.08998 * 109.47099 * 300.00266 * 4 3 2 31 31 H 1.09004 * 109.46703 * 60.00064 * 4 3 2 32 32 H 1.09002 * 109.47416 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.46824 * 306.55374 * 5 3 2 34 34 H 1.09000 * 109.47274 * 186.55495 * 5 3 2 35 35 H 0.96998 * 119.99968 * 6.40617 * 6 5 3 36 36 H 0.97007 * 119.99396 * 0.02562 * 9 7 6 37 37 H 1.08003 * 126.06474 * 359.96979 * 11 10 9 38 38 H 1.07999 * 126.07036 * 180.26088 * 12 11 10 39 39 H 1.09004 * 109.47477 * 4.71428 * 14 13 12 40 40 H 1.09005 * 109.47293 * 244.71689 * 14 13 12 41 41 H 0.97002 * 119.99629 * 0.27131 * 18 17 15 42 42 H 1.08994 * 115.54940 * 159.84099 * 24 3 2 43 43 H 1.09007 * 117.50108 * 0.02562 * 25 24 3 44 44 H 1.08995 * 117.50212 * 145.02070 * 25 24 3 45 45 H 1.08997 * 117.49769 * 214.97832 * 26 24 3 46 46 H 1.09002 * 117.49840 * 359.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4569 2.1101 1.1778 5 6 1.6664 2.0168 -1.3102 6 7 0.2244 2.2699 -1.3645 7 6 -0.3299 2.7723 -2.4856 8 8 0.3668 3.0151 -3.4521 9 7 -1.6565 3.0047 -2.5358 10 6 -2.2329 3.5278 -3.7018 11 6 -1.5503 3.8537 -4.8846 12 6 -2.4576 4.3211 -5.7719 13 7 -3.6681 4.3016 -5.1753 14 6 -4.9326 4.7272 -5.7802 15 6 -5.9328 3.6030 -5.6970 16 1 -5.6541 2.6651 -5.2397 17 6 -7.2032 3.7715 -6.2057 18 7 -7.5439 4.9150 -6.7586 19 14 -8.4426 2.3776 -6.1032 20 1 -9.7264 2.8112 -6.7109 21 1 -7.9213 1.1967 -6.8373 22 1 -8.6655 2.0170 -4.6800 23 7 -3.5047 3.7976 -3.8787 24 6 3.5299 1.1870 0.1324 25 6 4.1539 -0.1910 -0.0971 26 6 4.0757 0.3882 1.3177 27 1 -0.3633 0.3209 -0.9764 28 1 -0.3633 -1.0059 0.2102 29 1 -0.3633 0.6850 0.7660 30 1 0.3743 2.1944 1.0835 31 1 1.7019 1.6032 2.1112 32 1 1.8999 3.1060 1.1775 33 1 1.9569 1.3883 -2.1520 34 1 2.2037 2.9638 -1.3613 35 1 -0.3314 2.0759 -0.5936 36 1 -2.2123 2.8106 -1.7648 37 1 -0.4896 3.7462 -5.0568 38 1 -2.2501 4.6528 -6.7786 39 1 -4.7658 4.9885 -6.8252 40 1 -5.3171 5.5958 -5.2454 41 1 -6.9002 5.6387 -6.8121 42 1 4.0993 2.0577 -0.1927 43 1 3.4817 -1.0132 -0.3428 44 1 5.1339 -0.2269 -0.5727 45 1 5.0044 0.7331 1.7722 46 1 3.3521 -0.0527 2.0034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291225232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:24 Heat of formation + Delta-G solvation = 50.683919 kcal Electronic energy + Delta-G solvation = -27044.547450 eV Core-core repulsion = 23166.236338 eV Total energy + Delta-G solvation = -3878.311112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01562 -40.37746 -39.20555 -36.61367 -35.03526 -34.59661 -33.65287 -31.63238 -30.62184 -29.36157 -28.07296 -26.78322 -25.94645 -23.57800 -22.89165 -22.57245 -21.62484 -20.78877 -20.36162 -19.73362 -18.18722 -17.18181 -17.00343 -16.59609 -16.49817 -16.06411 -15.51275 -15.28237 -14.89963 -14.62203 -14.51579 -14.07216 -13.90046 -13.78169 -13.34455 -13.22985 -13.10622 -12.58359 -12.42569 -12.30468 -12.11782 -11.82478 -11.81118 -11.64482 -11.36051 -11.16037 -10.81937 -10.74371 -10.56377 -10.47157 -10.16748 -10.15144 -9.93202 -9.74482 -9.20588 -8.97824 -8.58185 -8.18512 -7.48027 -6.58009 -4.31937 2.27558 2.57868 3.03234 3.22232 3.37377 3.38965 3.41593 3.51637 3.58762 3.76550 4.12473 4.19441 4.28531 4.41094 4.44661 4.67434 4.77475 4.81865 4.90701 5.08278 5.15342 5.15884 5.21814 5.33136 5.35112 5.39310 5.43310 5.54980 5.61967 5.70269 5.71188 5.79222 5.93315 6.09655 6.19058 6.40574 6.46175 6.64229 6.76556 6.77389 6.91335 7.40833 7.62209 7.84389 7.86028 8.34653 8.50878 8.55816 8.63189 9.36161 10.79426 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025123 B = 0.002246 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.234685 B =12463.929810 C =13113.402680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.370 6.370 3 C 0.135 3.865 4 C -0.180 4.180 5 C 0.121 3.879 6 N -0.748 5.748 7 C 0.712 3.288 8 O -0.564 6.564 9 N -0.644 5.644 10 C 0.277 3.723 11 C -0.283 4.283 12 C 0.050 3.950 13 N -0.319 5.319 14 C 0.250 3.750 15 C -0.607 4.607 16 H 0.063 0.937 17 C 0.022 3.978 18 N -0.905 5.905 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.305 5.305 24 C -0.148 4.148 25 C -0.163 4.163 26 C -0.169 4.169 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.396 0.604 36 H 0.406 0.594 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.046 0.954 40 H 0.034 0.966 41 H 0.267 0.733 42 H 0.119 0.881 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.401 -7.263 16.700 28.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.289 6.289 3 C 0.095 3.905 4 C -0.237 4.237 5 C -0.003 4.003 6 N -0.409 5.409 7 C 0.411 3.589 8 O -0.439 6.439 9 N -0.294 5.294 10 C 0.023 3.977 11 C -0.315 4.315 12 C -0.099 4.099 13 N -0.100 5.100 14 C 0.131 3.869 15 C -0.645 4.645 16 H 0.081 0.919 17 C -0.183 4.183 18 N -0.540 5.540 19 Si 0.904 3.096 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.212 1.212 23 N -0.136 5.136 24 C -0.167 4.167 25 C -0.200 4.200 26 C -0.206 4.206 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.234 0.766 36 H 0.240 0.760 37 H 0.180 0.820 38 H 0.185 0.815 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.137 0.863 43 H 0.124 0.876 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 19.335 -7.579 15.897 26.153 hybrid contribution 1.552 0.558 0.758 1.815 sum 20.888 -7.021 16.654 27.621 Atomic orbital electron populations 1.23209 0.81399 1.03155 1.01124 1.87965 1.19561 1.26484 1.94933 1.21117 0.92479 0.83514 0.93362 1.22421 1.01214 1.01383 0.98664 1.21806 0.79456 1.00789 0.98268 1.45546 1.09523 1.70310 1.15502 1.15631 0.81186 0.78576 0.83513 1.90874 1.60898 1.57111 1.35010 1.41376 1.06689 1.66490 1.14815 1.18772 0.91376 1.00193 0.87363 1.21523 1.01620 1.15611 0.92718 1.22558 0.85503 1.02319 0.99550 1.48755 1.07768 1.45751 1.07772 1.19749 0.77821 0.96940 0.92348 1.22101 0.98455 1.00335 1.43646 0.91871 1.25927 0.97858 1.01506 0.92962 1.70851 1.38263 1.03675 1.41226 0.83418 0.75540 0.74015 0.76644 1.20529 1.21236 1.21170 1.77338 1.13666 1.22778 0.99802 1.22103 0.91841 0.97230 1.05528 1.22915 1.01837 0.96478 0.98769 1.22917 1.02502 1.03667 0.91520 0.92332 0.89488 0.93371 0.92084 0.91038 0.90668 0.89876 0.90615 0.76645 0.75991 0.82039 0.81526 0.93625 0.94816 0.92278 0.86276 0.87565 0.88912 0.88827 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.24 101.05 0.93 0.99 16 2 O -0.37 -3.17 8.71 -35.23 -0.31 -3.48 16 3 C 0.14 0.99 0.89 -90.61 -0.08 0.91 16 4 C -0.18 -1.07 7.79 37.16 0.29 -0.78 16 5 C 0.12 1.13 4.74 -4.04 -0.02 1.11 16 6 N -0.75 -7.56 3.55 -65.22 -0.23 -7.79 16 7 C 0.71 10.46 8.53 -86.92 -0.74 9.72 16 8 O -0.56 -10.23 13.45 5.28 0.07 -10.16 16 9 N -0.64 -10.00 5.45 -15.51 -0.08 -10.08 16 10 C 0.28 5.63 8.11 -154.37 -1.25 4.38 16 11 C -0.28 -5.73 9.60 -39.84 -0.38 -6.11 16 12 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 13 N -0.32 -7.51 3.67 -62.56 -0.23 -7.74 16 14 C 0.25 6.35 5.57 -5.20 -0.03 6.32 16 15 C -0.61 -17.13 9.24 -34.44 -0.32 -17.45 16 16 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 17 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 18 N -0.90 -26.38 13.65 55.43 0.76 -25.63 16 19 Si 1.08 24.95 29.90 -169.99 -5.08 19.87 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 23 N -0.30 -7.09 12.42 31.44 0.39 -6.70 16 24 C -0.15 -0.99 5.06 -90.62 -0.46 -1.44 16 25 C -0.16 -1.13 9.89 -26.70 -0.26 -1.39 16 26 C -0.17 -1.02 9.69 -26.69 -0.26 -1.28 16 27 H 0.06 0.49 5.95 -51.93 -0.31 0.18 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.26 5.39 -51.93 -0.28 -0.02 16 30 H 0.06 0.33 4.84 -51.93 -0.25 0.08 16 31 H 0.07 0.40 7.68 -51.93 -0.40 0.01 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.92 8.12 -51.93 -0.42 0.50 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.40 3.04 4.45 -40.82 -0.18 2.86 16 36 H 0.41 5.05 8.84 -40.82 -0.36 4.69 16 37 H 0.16 3.21 5.91 -52.48 -0.31 2.90 16 38 H 0.17 2.76 8.06 -52.49 -0.42 2.34 16 39 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 40 H 0.03 0.89 8.00 -51.93 -0.42 0.48 16 41 H 0.27 7.62 7.22 -40.82 -0.29 7.32 16 42 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.11 0.87 7.14 -51.92 -0.37 0.50 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.10 0.62 7.96 -51.93 -0.41 0.20 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -34.18 371.52 -8.58 -42.76 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.58 Total: 7.03 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.88 Total: -3.68 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.60 Total: -57.95 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.24 Total: -13.63 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.18 -8.58 -42.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291225232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.447 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds