Wall clock time and date at job start Tue Mar 31 2020 13:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00317 * 2 1 4 4 C 1.53002 * 109.47181 * 54.73328 * 3 2 1 5 5 C 1.53006 * 109.47220 * 294.73457 * 3 2 1 6 6 N 1.46502 * 109.46901 * 66.55378 * 5 3 2 7 7 C 1.34777 * 119.99990 * 186.40343 * 6 5 3 8 8 O 1.21593 * 119.99908 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00371 * 179.97438 * 7 6 5 10 10 C 1.40190 * 120.00030 * 179.97438 * 9 7 6 11 11 C 1.40394 * 125.97669 * 0.02562 * 10 9 7 12 12 C 1.35242 * 107.87039 * 179.73513 * 11 10 9 13 13 N 1.34966 * 107.85675 * 0.36634 * 12 11 10 14 14 C 1.46496 * 125.97617 * 179.89702 * 13 12 11 15 15 C 1.50700 * 109.47317 * 124.71587 * 14 13 12 16 16 H 1.08001 * 119.99660 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99868 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00390 * 359.72465 * 17 15 14 19 19 Si 1.86801 * 119.99456 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46738 * 179.72527 * 19 17 15 21 21 H 1.48498 * 109.47064 * 299.72258 * 19 17 15 22 22 H 1.48496 * 109.47388 * 59.72794 * 19 17 15 23 23 N 1.31213 * 125.97009 * 179.97438 * 10 9 7 24 24 C 1.53001 * 109.47475 * 174.73521 * 3 2 1 25 25 C 1.52997 * 117.49782 * 14.16917 * 24 3 2 26 26 C 1.53005 * 117.49662 * 305.51336 * 24 3 2 27 27 H 1.09006 * 109.46709 * 71.80558 * 1 2 3 28 28 H 1.08997 * 109.47113 * 191.80279 * 1 2 3 29 29 H 1.08993 * 109.47096 * 311.80375 * 1 2 3 30 30 H 1.08998 * 109.47099 * 300.00266 * 4 3 2 31 31 H 1.09004 * 109.46703 * 60.00064 * 4 3 2 32 32 H 1.09002 * 109.47416 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.46824 * 306.55374 * 5 3 2 34 34 H 1.09000 * 109.47274 * 186.55495 * 5 3 2 35 35 H 0.96998 * 119.99968 * 6.40617 * 6 5 3 36 36 H 0.97007 * 119.99396 * 0.02562 * 9 7 6 37 37 H 1.08003 * 126.06474 * 359.96979 * 11 10 9 38 38 H 1.07999 * 126.07036 * 180.26088 * 12 11 10 39 39 H 1.09004 * 109.47477 * 4.71428 * 14 13 12 40 40 H 1.09005 * 109.47293 * 244.71689 * 14 13 12 41 41 H 0.97002 * 119.99629 * 0.27131 * 18 17 15 42 42 H 1.08994 * 115.54940 * 159.84099 * 24 3 2 43 43 H 1.09007 * 117.50108 * 0.02562 * 25 24 3 44 44 H 1.08995 * 117.50212 * 145.02070 * 25 24 3 45 45 H 1.08997 * 117.49769 * 214.97832 * 26 24 3 46 46 H 1.09002 * 117.49840 * 359.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4569 2.1101 1.1778 5 6 1.6664 2.0168 -1.3102 6 7 0.2244 2.2699 -1.3645 7 6 -0.3299 2.7723 -2.4856 8 8 0.3668 3.0151 -3.4521 9 7 -1.6565 3.0047 -2.5358 10 6 -2.2329 3.5278 -3.7018 11 6 -1.5503 3.8537 -4.8846 12 6 -2.4576 4.3211 -5.7719 13 7 -3.6681 4.3016 -5.1753 14 6 -4.9326 4.7272 -5.7802 15 6 -5.9328 3.6030 -5.6970 16 1 -5.6541 2.6651 -5.2397 17 6 -7.2032 3.7715 -6.2057 18 7 -7.5439 4.9150 -6.7586 19 14 -8.4426 2.3776 -6.1032 20 1 -9.7264 2.8112 -6.7109 21 1 -7.9213 1.1967 -6.8373 22 1 -8.6655 2.0170 -4.6800 23 7 -3.5047 3.7976 -3.8787 24 6 3.5299 1.1870 0.1324 25 6 4.1539 -0.1910 -0.0971 26 6 4.0757 0.3882 1.3177 27 1 -0.3633 0.3209 -0.9764 28 1 -0.3633 -1.0059 0.2102 29 1 -0.3633 0.6850 0.7660 30 1 0.3743 2.1944 1.0835 31 1 1.7019 1.6032 2.1112 32 1 1.8999 3.1060 1.1775 33 1 1.9569 1.3883 -2.1520 34 1 2.2037 2.9638 -1.3613 35 1 -0.3314 2.0759 -0.5936 36 1 -2.2123 2.8106 -1.7648 37 1 -0.4896 3.7462 -5.0568 38 1 -2.2501 4.6528 -6.7786 39 1 -4.7658 4.9885 -6.8252 40 1 -5.3171 5.5958 -5.2454 41 1 -6.9002 5.6387 -6.8121 42 1 4.0993 2.0577 -0.1927 43 1 3.4817 -1.0132 -0.3428 44 1 5.1339 -0.2269 -0.5727 45 1 5.0044 0.7331 1.7722 46 1 3.3521 -0.0527 2.0034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291225232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:23 Heat of formation + Delta-G solvation = 29.055520 kcal Electronic energy + Delta-G solvation = -27045.485328 eV Core-core repulsion = 23166.236338 eV Total energy + Delta-G solvation = -3879.248990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.36772 -41.47811 -40.24658 -37.19183 -36.49034 -35.67251 -35.51503 -32.85296 -31.88926 -31.01135 -28.69535 -28.25312 -27.13011 -25.14791 -24.03440 -23.07091 -22.83616 -22.12793 -21.61058 -20.75928 -19.33866 -19.20046 -18.36330 -17.40756 -17.23520 -17.15125 -16.63672 -16.42802 -16.00996 -15.86073 -15.62387 -15.39768 -15.33811 -14.96375 -14.61097 -14.19713 -13.96038 -13.91707 -13.83971 -13.70663 -13.23011 -13.05550 -12.80844 -12.60794 -12.31129 -12.18508 -12.04688 -11.95571 -11.92015 -11.70907 -11.29207 -11.24532 -11.06106 -11.00821 -10.69365 -10.56177 -10.12406 -9.81385 -9.16212 -8.76862 -6.55483 0.96166 1.02673 1.51022 1.57497 1.61153 1.78889 1.98438 2.31783 2.48696 2.66624 2.90230 3.01167 3.05185 3.54608 3.68800 3.85595 3.90304 4.13392 4.17351 4.24195 4.26806 4.40057 4.46276 4.53529 4.56403 4.60793 4.71142 4.76529 4.79070 4.82135 4.85154 4.89447 4.93047 5.03304 5.11347 5.22103 5.29885 5.32580 5.40136 5.53741 5.70896 5.83278 5.94118 6.19066 6.27101 6.41719 6.59781 7.02936 7.20130 7.32042 8.58592 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025123 B = 0.002246 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.234685 B =12463.929810 C =13113.402680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.384 6.384 3 C 0.139 3.861 4 C -0.178 4.178 5 C 0.121 3.879 6 N -0.724 5.724 7 C 0.711 3.289 8 O -0.598 6.598 9 N -0.636 5.636 10 C 0.287 3.713 11 C -0.290 4.290 12 C 0.056 3.944 13 N -0.344 5.344 14 C 0.260 3.740 15 C -0.621 4.621 16 H 0.045 0.955 17 C -0.020 4.020 18 N -0.923 5.923 19 Si 1.120 2.880 20 H -0.275 1.275 21 H -0.272 1.272 22 H -0.274 1.274 23 N -0.345 5.345 24 C -0.153 4.153 25 C -0.174 4.174 26 C -0.158 4.158 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.410 0.590 36 H 0.420 0.580 37 H 0.168 0.832 38 H 0.201 0.799 39 H 0.054 0.946 40 H 0.017 0.983 41 H 0.261 0.739 42 H 0.130 0.870 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.304 -7.966 18.085 29.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.303 6.303 3 C 0.100 3.900 4 C -0.235 4.235 5 C -0.003 4.003 6 N -0.385 5.385 7 C 0.410 3.590 8 O -0.475 6.475 9 N -0.287 5.287 10 C 0.031 3.969 11 C -0.321 4.321 12 C -0.092 4.092 13 N -0.126 5.126 14 C 0.140 3.860 15 C -0.659 4.659 16 H 0.063 0.937 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.941 3.059 20 H -0.200 1.200 21 H -0.197 1.197 22 H -0.200 1.200 23 N -0.176 5.176 24 C -0.172 4.172 25 C -0.211 4.211 26 C -0.195 4.195 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.251 0.749 36 H 0.257 0.743 37 H 0.185 0.815 38 H 0.218 0.782 39 H 0.072 0.928 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.148 0.852 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.126 0.874 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 20.274 -8.297 17.346 27.942 hybrid contribution 1.434 0.746 0.392 1.663 sum 21.708 -7.551 17.737 29.032 Atomic orbital electron populations 1.23292 0.80895 1.04247 1.00923 1.87971 1.20246 1.27194 1.94913 1.21143 0.93100 0.83112 0.92694 1.22425 1.01499 1.01522 0.98101 1.21924 0.78508 1.00961 0.98931 1.45413 1.10108 1.68440 1.14505 1.15786 0.80578 0.78448 0.84149 1.90845 1.61487 1.58613 1.36602 1.41360 1.07251 1.66093 1.14043 1.19064 0.90664 0.98489 0.88675 1.21700 1.01827 1.15749 0.92838 1.23164 0.84253 1.00950 1.00876 1.48549 1.07901 1.47665 1.08470 1.19422 0.78484 0.95530 0.92549 1.22280 0.99571 1.00404 1.43601 0.93656 1.27284 0.99739 1.02915 0.92026 1.70947 1.38301 1.04195 1.42451 0.82879 0.73703 0.71918 0.77430 1.20018 1.19696 1.19995 1.77257 1.15301 1.24840 1.00232 1.22198 0.91410 0.97457 1.06117 1.22912 1.01994 0.96248 0.99959 1.22953 1.02899 1.02694 0.90934 0.93778 0.88776 0.91349 0.91550 0.90336 0.89938 0.91805 0.90062 0.74935 0.74258 0.81451 0.78191 0.92844 0.96515 0.92976 0.85194 0.89180 0.88110 0.87357 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.24 113.37 1.05 1.08 16 2 O -0.38 -6.07 8.71 -148.98 -1.30 -7.37 16 3 C 0.14 1.82 0.89 -10.79 -0.01 1.81 16 4 C -0.18 -1.67 7.79 71.98 0.56 -1.10 16 5 C 0.12 2.10 4.74 86.38 0.41 2.51 16 6 N -0.72 -13.57 3.55 -478.52 -1.70 -15.27 16 7 C 0.71 20.17 8.53 179.05 1.53 21.70 16 8 O -0.60 -21.31 13.45 -4.01 -0.05 -21.36 16 9 N -0.64 -19.15 5.45 -321.24 -1.75 -20.91 16 10 C 0.29 11.54 8.11 133.31 1.08 12.62 16 11 C -0.29 -11.54 9.60 22.10 0.21 -11.33 16 12 C 0.06 2.22 11.44 83.52 0.96 3.18 16 13 N -0.34 -16.30 3.67 -351.84 -1.29 -17.59 16 14 C 0.26 13.41 5.57 85.63 0.48 13.89 16 15 C -0.62 -35.39 9.24 25.60 0.24 -35.15 16 16 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 17 C -0.02 -1.12 5.46 84.66 0.46 -0.66 16 18 N -0.92 -54.02 13.65 21.45 0.29 -53.73 16 19 Si 1.12 49.69 29.90 68.60 2.05 51.74 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 23 N -0.35 -16.16 12.42 -54.44 -0.68 -16.83 16 24 C -0.15 -1.78 5.06 -10.79 -0.05 -1.83 16 25 C -0.17 -2.23 9.89 30.62 0.30 -1.92 16 26 C -0.16 -1.60 9.69 30.62 0.30 -1.31 16 27 H 0.04 0.69 5.95 -2.38 -0.01 0.67 16 28 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 0.58 5.39 -2.39 -0.01 0.56 16 30 H 0.07 0.53 4.84 -2.39 -0.01 0.52 16 31 H 0.08 0.67 7.68 -2.38 -0.02 0.65 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.06 1.39 8.12 -2.39 -0.02 1.38 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.41 5.47 4.45 -92.71 -0.41 5.05 16 36 H 0.42 9.94 8.84 -92.70 -0.82 9.12 16 37 H 0.17 6.52 5.91 -2.91 -0.02 6.50 16 38 H 0.20 6.31 8.06 -2.91 -0.02 6.28 16 39 H 0.05 2.65 7.94 -2.39 -0.02 2.63 16 40 H 0.02 0.92 8.00 -2.38 -0.02 0.90 16 41 H 0.26 15.09 7.22 -92.71 -0.67 14.42 16 42 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 1.45 7.14 -2.38 -0.02 1.44 16 44 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.09 1.02 7.96 -2.39 -0.02 1.00 16 Total: -1.00 -73.66 371.52 2.97 -70.69 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -0.11 Total: 27.15 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 7.50 Total: 3.47 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -5.12 Total: -124.32 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.35 Total: -28.73 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 2.05 Total: 51.74 kcal Total: -73.66 2.97 -70.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291225232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.747 kcal (2) G-P(sol) polarization free energy of solvation -73.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds