Wall clock time and date at job start Tue Mar 31 2020 12:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47144 * 2 1 4 4 H 1.09003 * 109.70877 * 61.85312 * 3 2 1 5 5 C 1.52875 * 109.61793 * 301.54431 * 3 2 1 6 6 O 1.42968 * 109.29683 * 188.11061 * 5 3 2 7 7 C 1.42966 * 114.16252 * 62.45427 * 6 5 3 8 8 C 1.53293 * 109.22121 * 297.41628 * 7 6 5 9 9 N 1.47151 * 108.38575 * 52.30307 * 8 7 6 10 10 C 1.34779 * 120.97812 * 129.44351 * 9 8 7 11 11 O 1.21842 * 119.99791 * 174.60509 * 10 9 8 12 12 N 1.33833 * 120.00241 * 354.59933 * 10 9 8 13 13 C 1.32931 * 119.99921 * 180.02562 * 12 10 9 14 14 C 1.41214 * 126.37968 * 0.02708 * 13 12 10 15 15 C 1.34956 * 108.24577 * 179.97438 * 14 13 12 16 16 C 1.50693 * 125.52777 * 180.02562 * 15 14 13 17 17 N 1.36453 * 108.94561 * 359.97438 * 15 14 13 18 18 C 1.46504 * 125.85152 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.47084 * 85.00369 * 18 17 15 20 20 H 1.08004 * 120.00151 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00211 * 179.72646 * 19 18 17 22 22 N 1.31514 * 120.00324 * 180.27306 * 21 19 18 23 23 Si 1.86804 * 119.99794 * 0.27284 * 21 19 18 24 24 H 1.48504 * 109.47206 * 90.00152 * 23 21 19 25 25 H 1.48502 * 109.47270 * 209.99962 * 23 21 19 26 26 H 1.48499 * 109.47035 * 330.00057 * 23 21 19 27 27 N 1.37426 * 126.37869 * 180.26941 * 13 12 10 28 28 H 0.96998 * 126.36485 * 0.06959 * 27 13 12 29 29 H 1.09003 * 109.47113 * 305.10657 * 1 2 3 30 30 H 1.08996 * 109.47354 * 65.11198 * 1 2 3 31 31 H 1.09000 * 109.46781 * 185.11215 * 1 2 3 32 32 H 1.09001 * 109.47644 * 239.99849 * 2 1 3 33 33 H 1.09005 * 109.47201 * 119.99985 * 2 1 3 34 34 H 1.08996 * 109.58139 * 68.10490 * 5 3 2 35 35 H 1.08998 * 109.37207 * 307.99545 * 5 3 2 36 36 H 1.08999 * 109.50958 * 177.49234 * 7 6 5 37 37 H 1.08998 * 109.55512 * 57.36685 * 7 6 5 38 38 H 1.09003 * 109.68237 * 292.58116 * 8 7 6 39 39 H 1.08996 * 109.71088 * 172.04600 * 8 7 6 40 40 H 1.08005 * 125.87767 * 359.93058 * 14 13 12 41 41 H 1.09002 * 109.47058 * 269.99628 * 16 15 14 42 42 H 1.09002 * 109.47516 * 29.99807 * 16 15 14 43 43 H 1.08996 * 109.47446 * 149.99860 * 16 15 14 44 44 H 1.08997 * 109.47146 * 325.00679 * 18 17 15 45 45 H 1.08997 * 109.46988 * 205.00166 * 18 17 15 46 46 H 0.97000 * 120.00091 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7061 1.9504 0.9048 5 6 1.5008 2.1775 -1.2272 6 8 2.1278 3.4587 -1.3239 7 6 3.5442 3.4045 -1.5103 8 6 4.1883 2.7332 -0.2920 9 7 3.5103 1.4483 -0.0576 10 6 4.2152 0.3096 0.0942 11 8 3.6436 -0.7265 0.3847 12 7 5.5428 0.3168 -0.0744 13 6 6.2379 -0.8064 0.0748 14 6 5.7167 -2.0760 0.4073 15 6 6.7416 -2.9523 0.4626 16 6 6.6229 -4.4194 0.7854 17 7 7.9027 -2.2945 0.1776 18 6 9.2395 -2.8925 0.1354 19 6 9.4764 -3.4976 -1.2242 20 1 8.7080 -3.4427 -1.9811 21 6 10.6761 -4.1169 -1.5036 22 7 10.8850 -4.6403 -2.6919 23 14 12.0051 -4.2125 -0.1942 24 1 11.8315 -5.4569 0.5973 25 1 13.3404 -4.2213 -0.8439 26 1 11.8997 -3.0352 0.7048 27 7 7.5981 -0.9474 -0.0613 28 1 8.2297 -0.2455 -0.2832 29 1 -0.3633 0.5910 0.8407 30 1 -0.3634 0.4325 -0.9322 31 1 -0.3633 -1.0236 0.0916 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.4227 2.3062 -1.1316 35 1 1.7208 1.5961 -2.1225 36 1 3.9361 4.4159 -1.6183 37 1 3.7724 2.8280 -2.4067 38 1 4.0743 3.3733 0.5829 39 1 5.2470 2.5599 -0.4846 40 1 4.6769 -2.3060 0.5872 41 1 6.7196 -4.5636 1.8615 42 1 5.6510 -4.7866 0.4556 43 1 7.4121 -4.9693 0.2728 44 1 9.3143 -3.6689 0.8967 45 1 9.9877 -2.1232 0.3261 46 1 11.7292 -5.0756 -2.8886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330615956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:07 Heat of formation + Delta-G solvation = 45.633356 kcal Electronic energy + Delta-G solvation = -27863.462764 eV Core-core repulsion = 23984.932643 eV Total energy + Delta-G solvation = -3878.530121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.98278 -40.08928 -38.03680 -35.24974 -34.13761 -33.88187 -33.03081 -32.25866 -30.89943 -29.70939 -27.62923 -27.52731 -26.63681 -24.79225 -23.02588 -22.23026 -21.65800 -20.80635 -19.67529 -18.85801 -17.45446 -17.17433 -16.52520 -16.34279 -16.01016 -15.32422 -15.09266 -14.90397 -14.66642 -14.50000 -14.38077 -14.09567 -13.50415 -13.15861 -13.00778 -12.96918 -12.84563 -12.77144 -12.57023 -12.47343 -12.24141 -11.92223 -11.63792 -11.49477 -11.23497 -11.10320 -11.05236 -10.70859 -10.59709 -10.53946 -10.09872 -10.02724 -9.53821 -9.40623 -9.06686 -8.91685 -8.16510 -8.00537 -6.86638 -6.53527 -4.61932 1.68397 1.95047 2.94004 2.98880 3.05094 3.06176 3.25238 3.82420 3.95386 4.26470 4.55650 4.74533 4.81321 4.94913 4.97404 5.04770 5.15966 5.24616 5.39447 5.43806 5.50513 5.59280 5.60942 5.65621 5.71595 5.75289 5.78579 5.83384 5.96887 6.00390 6.01874 6.13587 6.16990 6.26884 6.36635 6.47444 6.64138 6.78050 6.92185 7.05284 7.12219 7.23503 7.56381 7.70511 7.97960 8.19241 8.43754 8.50687 8.99044 9.54229 10.57921 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022086 B = 0.002829 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.478838 B = 9895.437244 C =10555.553449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.114 4.114 3 C 0.131 3.869 4 H 0.068 0.932 5 C 0.051 3.949 6 O -0.387 6.387 7 C 0.045 3.955 8 C 0.091 3.909 9 N -0.613 5.613 10 C 0.692 3.308 11 O -0.620 6.620 12 N -0.712 5.712 13 C 0.492 3.508 14 C -0.330 4.330 15 C 0.192 3.808 16 C -0.101 4.101 17 N -0.344 5.344 18 C 0.229 3.771 19 C -0.562 4.562 20 H 0.085 0.915 21 C 0.084 3.916 22 N -0.876 5.876 23 Si 0.872 3.128 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.265 1.265 27 N -0.471 5.471 28 H 0.444 0.556 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.109 0.891 40 H 0.185 0.815 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.325 8.522 6.502 15.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.152 4.152 3 C 0.027 3.973 4 H 0.086 0.914 5 C -0.027 4.027 6 O -0.305 6.305 7 C -0.032 4.032 8 C -0.033 4.033 9 N -0.350 5.350 10 C 0.394 3.606 11 O -0.502 6.502 12 N -0.476 5.476 13 C 0.239 3.761 14 C -0.362 4.362 15 C 0.067 3.933 16 C -0.159 4.159 17 N -0.131 5.131 18 C 0.111 3.889 19 C -0.600 4.600 20 H 0.103 0.897 21 C -0.122 4.122 22 N -0.511 5.511 23 Si 0.698 3.302 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.190 1.190 27 N -0.194 5.194 28 H 0.291 0.709 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.071 0.929 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.127 0.873 40 H 0.202 0.798 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.899 8.768 6.301 15.342 hybrid contribution 1.118 -0.344 0.336 1.217 sum -9.781 8.424 6.637 14.515 Atomic orbital electron populations 1.21998 0.97325 1.01605 1.00870 1.22061 0.92968 0.93952 1.06210 1.21655 0.79669 0.98176 0.97827 0.91373 1.23068 0.97652 0.84628 0.97353 1.87903 1.20434 1.28380 1.93781 1.23029 0.81204 1.01518 0.97462 1.22141 0.99305 0.84685 0.97154 1.46875 1.04781 1.06735 1.76654 1.16469 0.84866 0.81966 0.77333 1.90709 1.72770 1.31509 1.55220 1.67983 1.07661 1.25627 1.46341 1.18668 0.81809 0.90981 0.84662 1.22216 1.01259 0.91591 1.21180 1.21279 0.84506 0.95442 0.92106 1.20666 1.04960 0.87729 1.02547 1.47295 1.08644 0.95571 1.61629 1.20271 0.74675 0.93884 1.00035 1.21231 1.03295 1.38765 0.96709 0.89692 1.24817 0.97745 0.94132 0.95531 1.69856 1.25394 1.35390 1.20486 0.86922 0.81999 0.79431 0.81850 1.19298 1.20285 1.18976 1.44322 1.06805 1.00262 1.67984 0.70889 0.93117 0.93431 0.92587 0.91485 0.87659 0.88089 0.92915 0.88249 0.92826 0.92224 0.87292 0.79850 0.89941 0.89176 0.88976 0.92422 0.93492 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.38 37.16 0.35 -1.35 16 2 C -0.11 -1.61 3.93 -26.73 -0.11 -1.71 16 3 C 0.13 1.81 3.21 -67.64 -0.22 1.60 16 4 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 5 C 0.05 0.62 5.62 37.09 0.21 0.83 16 6 O -0.39 -5.06 10.74 -35.23 -0.38 -5.44 16 7 C 0.05 0.54 6.98 37.31 0.26 0.80 16 8 C 0.09 1.23 6.65 -3.54 -0.02 1.20 16 9 N -0.61 -9.85 3.03 -170.91 -0.52 -10.37 16 10 C 0.69 13.23 8.04 -87.76 -0.71 12.53 16 11 O -0.62 -12.48 9.02 5.06 0.05 -12.43 16 12 N -0.71 -13.65 9.10 -15.79 -0.14 -13.79 16 13 C 0.49 9.39 8.07 -155.28 -1.25 8.14 16 14 C -0.33 -6.15 9.41 -39.62 -0.37 -6.52 16 15 C 0.19 3.31 6.92 -81.70 -0.57 2.74 16 16 C -0.10 -1.37 9.92 36.00 0.36 -1.01 16 17 N -0.34 -6.32 3.63 -58.04 -0.21 -6.53 16 18 C 0.23 4.43 4.78 -5.19 -0.02 4.40 16 19 C -0.56 -13.48 9.94 -34.44 -0.34 -13.82 16 20 H 0.09 2.35 8.06 -52.48 -0.42 1.93 16 21 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 22 N -0.88 -23.70 13.96 55.43 0.77 -22.92 16 23 Si 0.87 17.72 27.47 -169.99 -4.67 13.05 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.27 -5.03 6.54 56.52 0.37 -4.66 16 27 N -0.47 -8.28 7.38 31.33 0.23 -8.05 16 28 H 0.44 6.76 8.96 -182.55 -1.64 5.13 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.45 6.90 -51.93 -0.36 0.09 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.09 7.43 -51.93 -0.39 0.70 16 33 H 0.11 1.74 6.11 -51.93 -0.32 1.42 16 34 H 0.10 1.01 7.01 -51.93 -0.36 0.64 16 35 H 0.05 0.68 8.13 -51.93 -0.42 0.25 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.11 1.54 6.91 -51.93 -0.36 1.18 16 40 H 0.18 3.55 5.77 -52.48 -0.30 3.25 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.09 1.36 7.80 -51.93 -0.40 0.95 16 44 H 0.06 1.03 7.31 -51.93 -0.38 0.65 16 45 H 0.05 0.88 7.19 -51.93 -0.37 0.50 16 46 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -29.79 364.43 -10.19 -39.97 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -8.28 Total: 11.22 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -2.53 Total: 9.79 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.13 Total: -61.66 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.33 Total: -17.87 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -4.67 Total: 13.05 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.79 -10.19 -39.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330615956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.608 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds