Wall clock time and date at job start Tue Mar 31 2020 12:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47144 * 2 1 4 4 H 1.09003 * 109.70877 * 61.85312 * 3 2 1 5 5 C 1.52875 * 109.61793 * 301.54431 * 3 2 1 6 6 O 1.42968 * 109.29683 * 188.11061 * 5 3 2 7 7 C 1.42966 * 114.16252 * 62.45427 * 6 5 3 8 8 C 1.53293 * 109.22121 * 297.41628 * 7 6 5 9 9 N 1.47151 * 108.38575 * 52.30307 * 8 7 6 10 10 C 1.34779 * 120.97812 * 129.44351 * 9 8 7 11 11 O 1.21842 * 119.99791 * 174.60509 * 10 9 8 12 12 N 1.33833 * 120.00241 * 354.59933 * 10 9 8 13 13 C 1.32931 * 119.99921 * 180.02562 * 12 10 9 14 14 C 1.41214 * 126.37968 * 0.02708 * 13 12 10 15 15 C 1.34956 * 108.24577 * 179.97438 * 14 13 12 16 16 C 1.50693 * 125.52777 * 180.02562 * 15 14 13 17 17 N 1.36453 * 108.94561 * 359.97438 * 15 14 13 18 18 C 1.46504 * 125.85152 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.47084 * 85.00369 * 18 17 15 20 20 H 1.08004 * 120.00151 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00211 * 179.72646 * 19 18 17 22 22 N 1.31514 * 120.00324 * 180.27306 * 21 19 18 23 23 Si 1.86804 * 119.99794 * 0.27284 * 21 19 18 24 24 H 1.48504 * 109.47206 * 90.00152 * 23 21 19 25 25 H 1.48502 * 109.47270 * 209.99962 * 23 21 19 26 26 H 1.48499 * 109.47035 * 330.00057 * 23 21 19 27 27 N 1.37426 * 126.37869 * 180.26941 * 13 12 10 28 28 H 0.96998 * 126.36485 * 0.06959 * 27 13 12 29 29 H 1.09003 * 109.47113 * 305.10657 * 1 2 3 30 30 H 1.08996 * 109.47354 * 65.11198 * 1 2 3 31 31 H 1.09000 * 109.46781 * 185.11215 * 1 2 3 32 32 H 1.09001 * 109.47644 * 239.99849 * 2 1 3 33 33 H 1.09005 * 109.47201 * 119.99985 * 2 1 3 34 34 H 1.08996 * 109.58139 * 68.10490 * 5 3 2 35 35 H 1.08998 * 109.37207 * 307.99545 * 5 3 2 36 36 H 1.08999 * 109.50958 * 177.49234 * 7 6 5 37 37 H 1.08998 * 109.55512 * 57.36685 * 7 6 5 38 38 H 1.09003 * 109.68237 * 292.58116 * 8 7 6 39 39 H 1.08996 * 109.71088 * 172.04600 * 8 7 6 40 40 H 1.08005 * 125.87767 * 359.93058 * 14 13 12 41 41 H 1.09002 * 109.47058 * 269.99628 * 16 15 14 42 42 H 1.09002 * 109.47516 * 29.99807 * 16 15 14 43 43 H 1.08996 * 109.47446 * 149.99860 * 16 15 14 44 44 H 1.08997 * 109.47146 * 325.00679 * 18 17 15 45 45 H 1.08997 * 109.46988 * 205.00166 * 18 17 15 46 46 H 0.97000 * 120.00091 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7061 1.9504 0.9048 5 6 1.5008 2.1775 -1.2272 6 8 2.1278 3.4587 -1.3239 7 6 3.5442 3.4045 -1.5103 8 6 4.1883 2.7332 -0.2920 9 7 3.5103 1.4483 -0.0576 10 6 4.2152 0.3096 0.0942 11 8 3.6436 -0.7265 0.3847 12 7 5.5428 0.3168 -0.0744 13 6 6.2379 -0.8064 0.0748 14 6 5.7167 -2.0760 0.4073 15 6 6.7416 -2.9523 0.4626 16 6 6.6229 -4.4194 0.7854 17 7 7.9027 -2.2945 0.1776 18 6 9.2395 -2.8925 0.1354 19 6 9.4764 -3.4976 -1.2242 20 1 8.7080 -3.4427 -1.9811 21 6 10.6761 -4.1169 -1.5036 22 7 10.8850 -4.6403 -2.6919 23 14 12.0051 -4.2125 -0.1942 24 1 11.8315 -5.4569 0.5973 25 1 13.3404 -4.2213 -0.8439 26 1 11.8997 -3.0352 0.7048 27 7 7.5981 -0.9474 -0.0613 28 1 8.2297 -0.2455 -0.2832 29 1 -0.3633 0.5910 0.8407 30 1 -0.3634 0.4325 -0.9322 31 1 -0.3633 -1.0236 0.0916 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.4227 2.3062 -1.1316 35 1 1.7208 1.5961 -2.1225 36 1 3.9361 4.4159 -1.6183 37 1 3.7724 2.8280 -2.4067 38 1 4.0743 3.3733 0.5829 39 1 5.2470 2.5599 -0.4846 40 1 4.6769 -2.3060 0.5872 41 1 6.7196 -4.5636 1.8615 42 1 5.6510 -4.7866 0.4556 43 1 7.4121 -4.9693 0.2728 44 1 9.3143 -3.6689 0.8967 45 1 9.9877 -2.1232 0.3261 46 1 11.7292 -5.0756 -2.8886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330615956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:06 Heat of formation + Delta-G solvation = 26.050037 kcal Electronic energy + Delta-G solvation = -27864.311960 eV Core-core repulsion = 23984.932643 eV Total energy + Delta-G solvation = -3879.379317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.40686 -41.31056 -39.27626 -36.49977 -35.64355 -35.11822 -34.57730 -33.66814 -32.47364 -30.72771 -29.04200 -28.83163 -27.93122 -25.84941 -24.58228 -23.58731 -22.79789 -22.08222 -21.04048 -20.17413 -19.28071 -18.59221 -17.77891 -17.53611 -17.21432 -16.68985 -16.59688 -16.14266 -15.87995 -15.70194 -15.59946 -15.53648 -14.74196 -14.64426 -14.35561 -14.27836 -14.14996 -13.90259 -13.81576 -13.71086 -13.34708 -13.27591 -12.98993 -12.69566 -12.60667 -12.27966 -12.22107 -12.12331 -11.85561 -11.69650 -11.61768 -11.18004 -11.08129 -10.91834 -10.80270 -10.31023 -9.47791 -9.35962 -8.43022 -8.31996 -6.56387 0.24498 0.54618 1.37994 1.39271 1.47837 1.61736 2.02871 2.24975 2.81903 2.87902 2.95689 3.11594 3.67590 3.75883 3.85445 4.05375 4.11115 4.16984 4.22089 4.28372 4.41144 4.42882 4.47909 4.48908 4.62436 4.66439 4.76007 4.79314 4.80837 4.84082 4.91886 4.96909 4.99754 5.07625 5.15335 5.27880 5.32343 5.36785 5.56246 5.80038 5.89598 6.00287 6.10787 6.13520 6.38701 6.52594 6.80059 7.01811 7.09913 8.09483 8.73539 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022086 B = 0.002829 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.478838 B = 9895.437244 C =10555.553449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 C 0.126 3.874 4 H 0.078 0.922 5 C 0.056 3.944 6 O -0.391 6.391 7 C 0.050 3.950 8 C 0.089 3.911 9 N -0.617 5.617 10 C 0.677 3.323 11 O -0.639 6.639 12 N -0.718 5.718 13 C 0.477 3.523 14 C -0.346 4.346 15 C 0.197 3.803 16 C -0.099 4.099 17 N -0.351 5.351 18 C 0.235 3.765 19 C -0.561 4.561 20 H 0.031 0.969 21 C 0.026 3.974 22 N -0.934 5.934 23 Si 0.946 3.054 24 H -0.254 1.254 25 H -0.287 1.287 26 H -0.235 1.235 27 N -0.468 5.468 28 H 0.452 0.548 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.043 0.957 36 H 0.130 0.870 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.174 0.826 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.515 9.526 8.543 17.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.141 4.141 3 C 0.022 3.978 4 H 0.096 0.904 5 C -0.021 4.021 6 O -0.310 6.310 7 C -0.027 4.027 8 C -0.034 4.034 9 N -0.354 5.354 10 C 0.378 3.622 11 O -0.523 6.523 12 N -0.483 5.483 13 C 0.223 3.777 14 C -0.378 4.378 15 C 0.073 3.927 16 C -0.157 4.157 17 N -0.139 5.139 18 C 0.117 3.883 19 C -0.599 4.599 20 H 0.049 0.951 21 C -0.175 4.175 22 N -0.572 5.572 23 Si 0.768 3.232 24 H -0.178 1.178 25 H -0.213 1.213 26 H -0.158 1.158 27 N -0.192 5.192 28 H 0.301 0.699 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.147 0.853 35 H 0.061 0.939 36 H 0.148 0.852 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.192 0.808 41 H 0.134 0.866 42 H 0.123 0.877 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.125 9.821 8.352 17.029 hybrid contribution 1.081 -0.642 -0.368 1.310 sum -10.044 9.179 7.984 15.776 Atomic orbital electron populations 1.21920 0.94274 1.02319 1.02427 1.21798 0.95489 0.93612 1.03245 1.21861 0.78490 0.98216 0.99188 0.90441 1.23101 0.99056 0.84089 0.95879 1.87903 1.20841 1.28590 1.93633 1.23090 0.80752 1.02889 0.96009 1.22276 0.98851 0.83799 0.98523 1.47060 1.05807 1.06731 1.75782 1.16804 0.85029 0.82755 0.77662 1.90710 1.73055 1.32477 1.56038 1.68032 1.07908 1.25775 1.46552 1.18881 0.82402 0.91354 0.85020 1.22129 1.01194 0.92049 1.22473 1.21819 0.83638 0.96791 0.90492 1.20832 1.05363 0.84885 1.04576 1.47301 1.08759 0.95947 1.61852 1.20189 0.75478 0.94842 0.97794 1.21340 1.01963 1.38778 0.97856 0.95063 1.25792 1.00462 0.93426 0.97814 1.70031 1.26363 1.37374 1.23448 0.85753 0.77508 0.81039 0.78941 1.17800 1.21309 1.15804 1.44313 1.06535 1.00353 1.67983 0.69892 0.91541 0.91758 0.92412 0.94465 0.90580 0.85250 0.93880 0.85196 0.93809 0.90986 0.88258 0.80849 0.86598 0.87727 0.90065 0.89443 0.91704 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.38 71.98 0.67 -2.31 16 2 C -0.10 -2.94 3.93 30.59 0.12 -2.82 16 3 C 0.13 3.40 3.21 44.82 0.14 3.55 16 4 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 5 C 0.06 1.28 5.62 71.94 0.40 1.68 16 6 O -0.39 -9.42 10.74 -148.98 -1.60 -11.02 16 7 C 0.05 1.11 6.98 72.08 0.50 1.61 16 8 C 0.09 2.33 6.65 86.35 0.57 2.90 16 9 N -0.62 -19.89 3.03 -812.79 -2.46 -22.35 16 10 C 0.68 26.58 8.04 179.35 1.44 28.03 16 11 O -0.64 -26.82 9.02 -4.80 -0.04 -26.87 16 12 N -0.72 -28.19 9.10 -322.54 -2.94 -31.13 16 13 C 0.48 18.54 8.07 133.95 1.08 19.62 16 14 C -0.35 -13.12 9.41 22.25 0.21 -12.92 16 15 C 0.20 6.72 6.92 41.08 0.28 7.00 16 16 C -0.10 -2.52 9.92 71.23 0.71 -1.82 16 17 N -0.35 -12.63 3.63 -337.55 -1.23 -13.86 16 18 C 0.24 8.63 4.78 85.63 0.41 9.04 16 19 C -0.56 -27.16 9.94 25.60 0.25 -26.91 16 20 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 21 C 0.03 1.28 5.47 84.65 0.46 1.74 16 22 N -0.93 -52.05 13.96 21.45 0.30 -51.75 16 23 Si 0.95 35.19 27.47 68.60 1.88 37.07 16 24 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 25 H -0.29 -11.10 7.11 99.48 0.71 -10.40 16 26 H -0.24 -7.56 6.54 99.48 0.65 -6.91 16 27 N -0.47 -16.43 7.38 -54.78 -0.40 -16.84 16 28 H 0.45 13.70 8.96 -213.28 -1.91 11.79 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.06 6.90 -2.39 -0.02 1.04 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 1.26 7.43 -2.39 -0.02 1.24 16 33 H 0.08 2.61 6.11 -2.38 -0.01 2.60 16 34 H 0.13 2.20 7.01 -2.39 -0.02 2.18 16 35 H 0.04 1.07 8.13 -2.39 -0.02 1.05 16 36 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.10 2.80 6.91 -2.39 -0.02 2.78 16 40 H 0.17 6.96 5.77 -2.91 -0.02 6.94 16 41 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.08 2.30 7.80 -2.39 -0.02 2.28 16 44 H 0.09 2.78 7.31 -2.39 -0.02 2.76 16 45 H 0.07 2.20 7.19 -2.39 -0.02 2.19 16 46 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -68.08 364.43 -0.18 -68.27 By element: Atomic # 1 Polarization: 41.05 SS G_CDS: -0.97 Total: 40.08 kcal Atomic # 6 Polarization: 21.13 SS G_CDS: 7.27 Total: 28.40 kcal Atomic # 7 Polarization: -129.21 SS G_CDS: -6.73 Total: -135.94 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -1.64 Total: -37.88 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 1.88 Total: 37.07 kcal Total: -68.08 -0.18 -68.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330615956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.318 kcal (2) G-P(sol) polarization free energy of solvation -68.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds