Wall clock time and date at job start Tue Mar 31 2020 12:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47614 * 2 1 4 4 H 1.09010 * 109.70484 * 300.27844 * 3 2 1 5 5 C 1.53713 * 109.74676 * 61.04194 * 3 2 1 6 6 O 1.42964 * 109.14563 * 172.16862 * 5 3 2 7 7 C 1.42962 * 114.16652 * 297.28963 * 6 5 3 8 8 C 1.53295 * 109.22415 * 62.58044 * 7 6 5 9 9 N 1.47144 * 109.68350 * 179.73888 * 3 2 1 10 10 C 1.34777 * 120.98320 * 9.76634 * 9 3 2 11 11 O 1.21843 * 119.99966 * 354.47595 * 10 9 3 12 12 N 1.33834 * 120.00301 * 174.47828 * 10 9 3 13 13 C 1.32931 * 119.99939 * 179.97438 * 12 10 9 14 14 C 1.41207 * 126.38007 * 0.02562 * 13 12 10 15 15 C 1.34961 * 108.24429 * 179.97438 * 14 13 12 16 16 C 1.50700 * 125.52557 * 179.97438 * 15 14 13 17 17 N 1.36456 * 108.94799 * 359.97438 * 15 14 13 18 18 C 1.46495 * 125.85219 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47338 * 85.02491 * 18 17 15 20 20 H 1.08001 * 119.99554 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00325 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99844 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00225 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47032 * 60.00178 * 23 21 19 25 25 H 1.48496 * 109.47205 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46769 * 300.00106 * 23 21 19 27 27 N 1.37421 * 126.37755 * 180.02562 * 13 12 10 28 28 H 0.97002 * 126.36525 * 0.26115 * 27 13 12 29 29 H 1.08995 * 109.47410 * 54.15405 * 1 2 3 30 30 H 1.09002 * 109.47722 * 174.16154 * 1 2 3 31 31 H 1.09006 * 109.47041 * 294.15484 * 1 2 3 32 32 H 1.09004 * 109.46384 * 239.99512 * 2 1 3 33 33 H 1.08999 * 109.47044 * 120.00278 * 2 1 3 34 34 H 1.09005 * 109.65304 * 52.20288 * 5 3 2 35 35 H 1.09004 * 109.48869 * 292.02985 * 5 3 2 36 36 H 1.09006 * 109.51269 * 302.65842 * 7 6 5 37 37 H 1.08996 * 109.51154 * 182.50888 * 7 6 5 38 38 H 1.08994 * 109.68835 * 187.97625 * 8 7 6 39 39 H 1.09007 * 109.71046 * 67.43911 * 8 7 6 40 40 H 1.07999 * 125.88096 * 0.02562 * 14 13 12 41 41 H 1.08999 * 109.47152 * 270.04155 * 16 15 14 42 42 H 1.09004 * 109.46857 * 30.04473 * 16 15 14 43 43 H 1.09007 * 109.46774 * 150.04200 * 16 15 14 44 44 H 1.09000 * 109.46926 * 205.02760 * 18 17 15 45 45 H 1.09002 * 109.47291 * 325.02275 * 18 17 15 46 46 H 0.97001 * 120.00108 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6748 1.9615 -0.8863 5 6 1.5529 2.1656 1.2659 6 8 2.1823 3.4467 1.3456 7 6 3.6053 3.3929 1.4711 8 6 4.1977 2.7316 0.2214 9 7 3.5115 1.4477 0.0063 10 6 4.2103 0.3112 -0.1850 11 8 3.6277 -0.7558 -0.2660 12 7 5.5441 0.3547 -0.2858 13 6 6.2333 -0.7664 -0.4739 14 6 5.6994 -2.0687 -0.5870 15 6 6.7220 -2.9300 -0.7711 16 6 6.5910 -4.4220 -0.9383 17 7 7.8938 -2.2309 -0.7814 18 6 9.2318 -2.8014 -0.9555 19 6 9.5300 -2.9433 -2.4259 20 1 8.7963 -2.6386 -3.1575 21 6 10.7398 -3.4612 -2.8372 22 7 11.6334 -3.8318 -1.9463 23 14 11.1096 -3.6365 -4.6598 24 1 11.0523 -2.3013 -5.3071 25 1 12.4659 -4.2148 -4.8363 26 1 10.1044 -4.5332 -5.2848 27 7 7.5980 -0.8736 -0.5946 28 1 8.2379 -0.1457 -0.5549 29 1 -0.3634 0.6018 -0.8330 30 1 -0.3634 -1.0223 -0.1045 31 1 -0.3633 0.4206 0.9377 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.8114 1.5775 2.1465 35 1 0.4714 2.2936 1.2181 36 1 3.8713 2.8093 2.3525 37 1 4.0006 4.4039 1.5702 38 1 5.2637 2.5581 0.3681 39 1 4.0466 3.3780 -0.6432 40 1 4.6529 -2.3305 -0.5358 41 1 6.6398 -4.9027 0.0388 42 1 5.6353 -4.6523 -1.4092 43 1 7.4031 -4.7900 -1.5653 44 1 9.9699 -2.1432 -0.4970 45 1 9.2738 -3.7813 -0.4800 46 1 12.4844 -4.1964 -2.2356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330615957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:10 Heat of formation + Delta-G solvation = 39.508450 kcal Electronic energy + Delta-G solvation = -27807.974842 eV Core-core repulsion = 23929.179126 eV Total energy + Delta-G solvation = -3878.795717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.90256 -40.04590 -38.00114 -35.20276 -34.11250 -33.85527 -33.03841 -32.17135 -30.55542 -29.70733 -27.54417 -27.32045 -26.41693 -24.76579 -23.28692 -22.29108 -21.63615 -20.80646 -19.61332 -18.83979 -17.22498 -16.90448 -16.46624 -16.28268 -15.96641 -15.31331 -15.06396 -14.82083 -14.73196 -14.54564 -14.36492 -14.00019 -13.46862 -13.13957 -12.91488 -12.88245 -12.75327 -12.73512 -12.40068 -12.35883 -12.01468 -11.82467 -11.63059 -11.35216 -11.21922 -11.09557 -11.04656 -10.66591 -10.53055 -10.52355 -10.33176 -10.06280 -9.44488 -9.35372 -8.92707 -8.84794 -8.15232 -7.93317 -6.87887 -6.48807 -4.66315 1.76580 2.06158 3.06222 3.10643 3.12074 3.15852 3.28962 3.82369 4.05065 4.37815 4.60081 4.79535 4.80624 4.97279 5.04481 5.05080 5.17325 5.25014 5.37813 5.46328 5.57488 5.59912 5.63831 5.67368 5.74941 5.81906 5.84705 5.88454 5.99534 6.06410 6.15677 6.18134 6.37417 6.50567 6.52396 6.59530 6.68996 6.83338 7.06355 7.14095 7.29777 7.38702 7.51235 7.66762 7.83963 8.22326 8.42779 8.49368 9.04246 9.58933 10.51861 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.002748 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.745440 B =10186.482647 C =10741.956390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.108 4.108 3 C 0.131 3.869 4 H 0.068 0.932 5 C 0.051 3.949 6 O -0.387 6.387 7 C 0.046 3.954 8 C 0.092 3.908 9 N -0.614 5.614 10 C 0.691 3.309 11 O -0.621 6.621 12 N -0.714 5.714 13 C 0.488 3.512 14 C -0.334 4.334 15 C 0.189 3.811 16 C -0.099 4.099 17 N -0.344 5.344 18 C 0.256 3.744 19 C -0.557 4.557 20 H 0.068 0.932 21 C 0.071 3.929 22 N -0.887 5.887 23 Si 0.908 3.092 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.271 1.271 27 N -0.472 5.472 28 H 0.443 0.557 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.183 0.817 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.050 0.950 45 H 0.067 0.933 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.706 6.224 5.394 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.145 4.145 3 C 0.026 3.974 4 H 0.086 0.914 5 C -0.026 4.026 6 O -0.305 6.305 7 C -0.032 4.032 8 C -0.032 4.032 9 N -0.351 5.351 10 C 0.392 3.608 11 O -0.503 6.503 12 N -0.479 5.479 13 C 0.236 3.764 14 C -0.366 4.366 15 C 0.063 3.937 16 C -0.157 4.157 17 N -0.131 5.131 18 C 0.139 3.861 19 C -0.595 4.595 20 H 0.087 0.913 21 C -0.134 4.134 22 N -0.523 5.523 23 Si 0.735 3.265 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.196 1.196 27 N -0.194 5.194 28 H 0.290 0.710 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.118 0.882 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.200 0.800 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.206 6.505 5.414 14.853 hybrid contribution 0.646 -0.288 -1.005 1.229 sum -11.560 6.216 4.408 13.846 Atomic orbital electron populations 1.22025 0.97547 1.01550 1.00826 1.22019 0.92651 0.93778 1.06079 1.21850 0.79732 0.98227 0.97568 0.91398 1.23209 0.97718 0.84612 0.97090 1.87899 1.19740 1.28461 1.94415 1.23038 0.81188 1.01508 0.97420 1.22121 0.99235 0.84850 0.96953 1.46869 1.04668 1.07015 1.76573 1.16485 0.84995 0.82178 0.77124 1.90737 1.72446 1.28945 1.58195 1.67993 1.07561 1.25893 1.46457 1.18679 0.81879 0.91068 0.84783 1.22184 1.01092 0.90896 1.22474 1.21286 0.84561 0.95437 0.92449 1.20639 1.04593 0.86969 1.03498 1.47856 1.08772 0.93249 1.63261 1.19985 0.72631 0.94632 0.98815 1.21357 1.02300 1.45121 0.90700 0.91339 1.24942 0.95296 0.94166 0.99011 1.69886 1.07560 1.40734 1.34160 0.86366 0.77758 0.78924 0.83469 1.19867 1.20804 1.19647 1.44397 1.06267 0.99206 1.69556 0.70962 0.93198 0.92627 0.93450 0.88427 0.90955 0.92877 0.88213 0.92994 0.88238 0.87454 0.92182 0.80016 0.89944 0.89422 0.89092 0.93237 0.91558 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.44 37.16 0.35 -1.37 16 2 C -0.11 -1.52 3.89 -26.73 -0.10 -1.62 16 3 C 0.13 1.82 3.21 -67.21 -0.22 1.61 16 4 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 5 C 0.05 0.62 5.74 37.53 0.22 0.84 16 6 O -0.39 -5.03 10.74 -35.23 -0.38 -5.41 16 7 C 0.05 0.54 6.98 37.31 0.26 0.80 16 8 C 0.09 1.26 6.61 -3.53 -0.02 1.24 16 9 N -0.61 -9.96 3.01 -170.41 -0.51 -10.47 16 10 C 0.69 13.36 8.14 -87.76 -0.71 12.64 16 11 O -0.62 -12.62 8.80 5.06 0.04 -12.57 16 12 N -0.71 -13.92 9.13 -15.79 -0.14 -14.07 16 13 C 0.49 9.50 8.07 -155.29 -1.25 8.25 16 14 C -0.33 -6.33 9.41 -39.62 -0.37 -6.70 16 15 C 0.19 3.34 6.92 -81.70 -0.57 2.77 16 16 C -0.10 -1.39 9.92 36.01 0.36 -1.03 16 17 N -0.34 -6.53 3.63 -58.04 -0.21 -6.74 16 18 C 0.26 5.35 5.71 -5.20 -0.03 5.32 16 19 C -0.56 -13.14 9.39 -34.44 -0.32 -13.47 16 20 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 21 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -22.33 13.29 55.43 0.74 -21.59 16 23 Si 0.91 19.13 29.54 -169.99 -5.02 14.11 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 27 N -0.47 -8.53 7.38 31.33 0.23 -8.30 16 28 H 0.44 7.04 8.96 -182.55 -1.64 5.40 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.44 6.99 -51.93 -0.36 0.08 16 32 H 0.10 1.65 6.28 -51.93 -0.33 1.32 16 33 H 0.07 1.16 7.26 -51.93 -0.38 0.78 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.99 7.08 -51.93 -0.37 0.62 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.11 1.53 6.98 -51.93 -0.36 1.17 16 39 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.18 3.58 5.77 -52.49 -0.30 3.27 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 1.38 7.80 -51.92 -0.40 0.97 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.07 1.40 7.88 -51.93 -0.41 0.99 16 46 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 368.28 15.07 5.55 5.55 Total: -1.00 -28.29 368.28 -10.54 -38.83 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -8.32 Total: 9.77 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -2.52 Total: 10.88 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 0.10 Total: -61.17 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.33 Total: -17.98 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.29 -10.54 -38.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330615957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.338 kcal (2) G-P(sol) polarization free energy of solvation -28.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds