Wall clock time and date at job start Tue Mar 31 2020 12:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47614 * 2 1 4 4 H 1.09010 * 109.70484 * 300.27844 * 3 2 1 5 5 C 1.53713 * 109.74676 * 61.04194 * 3 2 1 6 6 O 1.42964 * 109.14563 * 172.16862 * 5 3 2 7 7 C 1.42962 * 114.16652 * 297.28963 * 6 5 3 8 8 C 1.53295 * 109.22415 * 62.58044 * 7 6 5 9 9 N 1.47144 * 109.68350 * 179.73888 * 3 2 1 10 10 C 1.34777 * 120.98320 * 9.76634 * 9 3 2 11 11 O 1.21843 * 119.99966 * 354.47595 * 10 9 3 12 12 N 1.33834 * 120.00301 * 174.47828 * 10 9 3 13 13 C 1.32931 * 119.99939 * 179.97438 * 12 10 9 14 14 C 1.41207 * 126.38007 * 0.02562 * 13 12 10 15 15 C 1.34961 * 108.24429 * 179.97438 * 14 13 12 16 16 C 1.50700 * 125.52557 * 179.97438 * 15 14 13 17 17 N 1.36456 * 108.94799 * 359.97438 * 15 14 13 18 18 C 1.46495 * 125.85219 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47338 * 85.02491 * 18 17 15 20 20 H 1.08001 * 119.99554 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00325 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99844 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00225 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47032 * 60.00178 * 23 21 19 25 25 H 1.48496 * 109.47205 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46769 * 300.00106 * 23 21 19 27 27 N 1.37421 * 126.37755 * 180.02562 * 13 12 10 28 28 H 0.97002 * 126.36525 * 0.26115 * 27 13 12 29 29 H 1.08995 * 109.47410 * 54.15405 * 1 2 3 30 30 H 1.09002 * 109.47722 * 174.16154 * 1 2 3 31 31 H 1.09006 * 109.47041 * 294.15484 * 1 2 3 32 32 H 1.09004 * 109.46384 * 239.99512 * 2 1 3 33 33 H 1.08999 * 109.47044 * 120.00278 * 2 1 3 34 34 H 1.09005 * 109.65304 * 52.20288 * 5 3 2 35 35 H 1.09004 * 109.48869 * 292.02985 * 5 3 2 36 36 H 1.09006 * 109.51269 * 302.65842 * 7 6 5 37 37 H 1.08996 * 109.51154 * 182.50888 * 7 6 5 38 38 H 1.08994 * 109.68835 * 187.97625 * 8 7 6 39 39 H 1.09007 * 109.71046 * 67.43911 * 8 7 6 40 40 H 1.07999 * 125.88096 * 0.02562 * 14 13 12 41 41 H 1.08999 * 109.47152 * 270.04155 * 16 15 14 42 42 H 1.09004 * 109.46857 * 30.04473 * 16 15 14 43 43 H 1.09007 * 109.46774 * 150.04200 * 16 15 14 44 44 H 1.09000 * 109.46926 * 205.02760 * 18 17 15 45 45 H 1.09002 * 109.47291 * 325.02275 * 18 17 15 46 46 H 0.97001 * 120.00108 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6748 1.9615 -0.8863 5 6 1.5529 2.1656 1.2659 6 8 2.1823 3.4467 1.3456 7 6 3.6053 3.3929 1.4711 8 6 4.1977 2.7316 0.2214 9 7 3.5115 1.4477 0.0063 10 6 4.2103 0.3112 -0.1850 11 8 3.6277 -0.7558 -0.2660 12 7 5.5441 0.3547 -0.2858 13 6 6.2333 -0.7664 -0.4739 14 6 5.6994 -2.0687 -0.5870 15 6 6.7220 -2.9300 -0.7711 16 6 6.5910 -4.4220 -0.9383 17 7 7.8938 -2.2309 -0.7814 18 6 9.2318 -2.8014 -0.9555 19 6 9.5300 -2.9433 -2.4259 20 1 8.7963 -2.6386 -3.1575 21 6 10.7398 -3.4612 -2.8372 22 7 11.6334 -3.8318 -1.9463 23 14 11.1096 -3.6365 -4.6598 24 1 11.0523 -2.3013 -5.3071 25 1 12.4659 -4.2148 -4.8363 26 1 10.1044 -4.5332 -5.2848 27 7 7.5980 -0.8736 -0.5946 28 1 8.2379 -0.1457 -0.5549 29 1 -0.3634 0.6018 -0.8330 30 1 -0.3634 -1.0223 -0.1045 31 1 -0.3633 0.4206 0.9377 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.8114 1.5775 2.1465 35 1 0.4714 2.2936 1.2181 36 1 3.8713 2.8093 2.3525 37 1 4.0006 4.4039 1.5702 38 1 5.2637 2.5581 0.3681 39 1 4.0466 3.3780 -0.6432 40 1 4.6529 -2.3305 -0.5358 41 1 6.6398 -4.9027 0.0388 42 1 5.6353 -4.6523 -1.4092 43 1 7.4031 -4.7900 -1.5653 44 1 9.9699 -2.1432 -0.4970 45 1 9.2738 -3.7813 -0.4800 46 1 12.4844 -4.1964 -2.2356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330615957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:09 Heat of formation + Delta-G solvation = 22.791563 kcal Electronic energy + Delta-G solvation = -27808.699741 eV Core-core repulsion = 23929.179126 eV Total energy + Delta-G solvation = -3879.520615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.37178 -41.27949 -39.24369 -36.47626 -35.66629 -35.10904 -34.54468 -33.60253 -32.15159 -30.72101 -28.83211 -28.72027 -27.82761 -25.83212 -24.91079 -23.60299 -22.77905 -22.10286 -21.01989 -20.18103 -18.90802 -18.46970 -17.71789 -17.47545 -17.20508 -16.73168 -16.55482 -16.22148 -15.87557 -15.76800 -15.57903 -15.46697 -14.69944 -14.41161 -14.33470 -14.22871 -14.09818 -13.84100 -13.69378 -13.66765 -13.30931 -13.21596 -12.95730 -12.74176 -12.66678 -12.29351 -12.25505 -12.13857 -12.05981 -11.70426 -11.55521 -11.17065 -11.02594 -10.79288 -10.75769 -10.28598 -9.50389 -9.28476 -8.52954 -8.18916 -6.55820 0.29441 0.58615 1.39028 1.41720 1.48699 1.64141 2.04999 2.30718 2.86130 2.91112 2.97896 3.13697 3.70888 3.74951 3.87497 4.06379 4.12720 4.22451 4.23894 4.34165 4.40921 4.47669 4.50703 4.63893 4.67354 4.76454 4.81181 4.81887 4.83825 4.87622 4.96858 4.98052 5.01205 5.12514 5.29222 5.34232 5.39409 5.51204 5.58388 5.71044 5.83881 5.92302 6.12495 6.18481 6.33097 6.57116 6.82882 7.03847 7.17938 8.11764 8.66596 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.002748 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.745440 B =10186.482647 C =10741.956390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.097 4.097 3 C 0.125 3.875 4 H 0.074 0.926 5 C 0.058 3.942 6 O -0.392 6.392 7 C 0.052 3.948 8 C 0.089 3.911 9 N -0.618 5.618 10 C 0.676 3.324 11 O -0.639 6.639 12 N -0.720 5.720 13 C 0.475 3.525 14 C -0.346 4.346 15 C 0.195 3.805 16 C -0.096 4.096 17 N -0.352 5.352 18 C 0.270 3.730 19 C -0.563 4.563 20 H 0.056 0.944 21 C 0.033 3.967 22 N -0.912 5.912 23 Si 0.961 3.039 24 H -0.277 1.277 25 H -0.279 1.279 26 H -0.267 1.267 27 N -0.469 5.469 28 H 0.451 0.549 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.128 0.872 36 H 0.047 0.953 37 H 0.130 0.870 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.175 0.825 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.041 0.959 45 H 0.068 0.932 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.876 6.803 5.420 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.134 4.134 3 C 0.021 3.979 4 H 0.091 0.909 5 C -0.020 4.020 6 O -0.311 6.311 7 C -0.026 4.026 8 C -0.034 4.034 9 N -0.354 5.354 10 C 0.376 3.624 11 O -0.523 6.523 12 N -0.485 5.485 13 C 0.222 3.778 14 C -0.379 4.379 15 C 0.069 3.931 16 C -0.154 4.154 17 N -0.139 5.139 18 C 0.153 3.847 19 C -0.601 4.601 20 H 0.075 0.925 21 C -0.170 4.170 22 N -0.550 5.550 23 Si 0.786 3.214 24 H -0.202 1.202 25 H -0.204 1.204 26 H -0.192 1.192 27 N -0.192 5.192 28 H 0.299 0.701 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.146 0.854 36 H 0.066 0.934 37 H 0.148 0.852 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.192 0.808 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.099 0.901 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.402 7.117 5.448 16.123 hybrid contribution 0.966 -0.437 -1.003 1.460 sum -12.436 6.680 4.445 14.800 Atomic orbital electron populations 1.21942 0.94505 1.02238 1.02394 1.21743 0.95154 0.93370 1.03180 1.22065 0.78473 0.98341 0.99005 0.90851 1.23234 0.99129 0.84069 0.95539 1.87899 1.20196 1.28723 1.94255 1.23094 0.80683 1.02894 0.95901 1.22258 0.98797 0.83935 0.98400 1.47053 1.05738 1.06988 1.75638 1.16808 0.85089 0.82993 0.77462 1.90737 1.72700 1.29893 1.58932 1.68042 1.07886 1.25979 1.46611 1.18882 0.82341 0.91481 0.85077 1.22103 1.00983 0.91149 1.23629 1.21819 0.83547 0.96923 0.90772 1.20794 1.05275 0.84427 1.04900 1.47734 1.08599 0.93724 1.63825 1.19658 0.73234 0.94509 0.97338 1.21511 1.02066 1.44745 0.91788 0.92525 1.25564 0.95232 0.93981 1.02188 1.69951 1.07921 1.41559 1.35557 0.85546 0.77715 0.78578 0.79570 1.20230 1.20377 1.19182 1.44360 1.06067 0.99179 1.69626 0.70089 0.91971 0.92420 0.91490 0.91772 0.93388 0.93397 0.85429 0.93431 0.85247 0.88413 0.91454 0.80822 0.87477 0.87344 0.90067 0.94133 0.91435 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.44 71.98 0.68 -2.32 16 2 C -0.10 -2.73 3.89 30.59 0.12 -2.61 16 3 C 0.12 3.38 3.21 45.11 0.14 3.52 16 4 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 5 C 0.06 1.28 5.74 72.22 0.41 1.69 16 6 O -0.39 -9.26 10.74 -148.98 -1.60 -10.86 16 7 C 0.05 1.11 6.98 72.08 0.50 1.62 16 8 C 0.09 2.37 6.61 86.35 0.57 2.94 16 9 N -0.62 -20.00 3.01 -811.22 -2.44 -22.44 16 10 C 0.68 26.68 8.14 179.35 1.46 28.14 16 11 O -0.64 -26.84 8.80 -4.81 -0.04 -26.88 16 12 N -0.72 -28.62 9.13 -322.55 -2.95 -31.57 16 13 C 0.48 18.79 8.07 133.95 1.08 19.87 16 14 C -0.35 -13.30 9.41 22.25 0.21 -13.09 16 15 C 0.19 6.84 6.92 41.09 0.28 7.13 16 16 C -0.10 -2.57 9.92 71.24 0.71 -1.87 16 17 N -0.35 -13.33 3.63 -337.55 -1.23 -14.56 16 18 C 0.27 11.29 5.71 85.63 0.49 11.78 16 19 C -0.56 -26.50 9.39 25.60 0.24 -26.26 16 20 H 0.06 2.77 7.81 -2.91 -0.02 2.75 16 21 C 0.03 1.57 5.46 84.65 0.46 2.03 16 22 N -0.91 -45.66 13.29 21.45 0.28 -45.38 16 23 Si 0.96 38.74 29.54 68.60 2.03 40.76 16 24 H -0.28 -11.24 7.11 99.48 0.71 -10.54 16 25 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 26 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 27 N -0.47 -17.13 7.38 -54.79 -0.40 -17.53 16 28 H 0.45 14.52 8.96 -213.28 -1.91 12.60 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.06 6.99 -2.38 -0.02 1.05 16 32 H 0.06 2.24 6.28 -2.38 -0.01 2.23 16 33 H 0.05 1.57 7.26 -2.39 -0.02 1.55 16 34 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.13 2.10 7.08 -2.39 -0.02 2.09 16 36 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.10 2.78 6.98 -2.39 -0.02 2.76 16 39 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.17 7.01 5.77 -2.91 -0.02 7.00 16 41 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 43 H 0.08 2.38 7.80 -2.38 -0.02 2.36 16 44 H 0.04 1.77 8.14 -2.39 -0.02 1.76 16 45 H 0.07 2.83 7.88 -2.39 -0.02 2.81 16 46 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 Total: -1.00 -60.70 368.28 0.10 -60.61 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.92 Total: 35.27 kcal Atomic # 6 Polarization: 25.22 SS G_CDS: 7.37 Total: 32.58 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -6.74 Total: -131.48 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.64 Total: -37.74 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.76 kcal Total: -60.70 0.10 -60.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330615957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.399 kcal (2) G-P(sol) polarization free energy of solvation -60.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds