Wall clock time and date at job start Tue Mar 31 2020 12:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47168 * 2 1 4 4 H 1.09001 * 109.46978 * 55.00252 * 3 2 1 5 5 C 1.53002 * 109.47154 * 295.00276 * 3 2 1 6 6 N 1.46491 * 109.47182 * 175.00451 * 3 2 1 7 7 N 1.40055 * 125.99800 * 60.02353 * 6 3 2 8 8 C 1.30830 * 108.36701 * 179.97438 * 7 6 3 9 9 C 1.40333 * 108.20977 * 359.97438 * 8 7 6 10 10 N 1.40479 * 126.11843 * 180.02562 * 9 8 7 11 11 C 1.34779 * 119.99709 * 359.97438 * 10 9 8 12 12 O 1.21399 * 119.99803 * 359.97438 * 11 10 9 13 13 C 1.49323 * 120.00127 * 179.97438 * 11 10 9 14 14 O 1.21363 * 119.99958 * 354.17035 * 13 11 10 15 15 N 1.34781 * 120.00096 * 174.16285 * 13 11 10 16 16 C 1.46500 * 119.99618 * 3.63295 * 15 13 11 17 17 C 1.46501 * 119.99740 * 183.62490 * 15 13 11 18 18 C 1.50702 * 109.46819 * 90.00595 * 17 15 13 19 19 H 1.07992 * 120.00147 * 359.97438 * 18 17 15 20 20 C 1.37879 * 119.99702 * 179.97438 * 18 17 15 21 21 N 1.31513 * 120.00165 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99718 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47208 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47066 * 120.00227 * 22 20 18 25 25 H 1.48504 * 109.47134 * 239.99660 * 22 20 18 26 26 C 1.35230 * 125.99010 * 240.00055 * 6 3 2 27 27 C 1.50693 * 126.18170 * 0.04171 * 26 6 3 28 28 H 1.08999 * 109.47467 * 59.99758 * 1 2 3 29 29 H 1.09002 * 109.47037 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47238 * 299.99791 * 1 2 3 31 31 H 1.09005 * 109.46591 * 240.00075 * 2 1 3 32 32 H 1.08999 * 109.47467 * 120.00241 * 2 1 3 33 33 H 1.09001 * 109.47158 * 299.99866 * 5 3 2 34 34 H 1.09006 * 109.47117 * 59.99741 * 5 3 2 35 35 H 1.09002 * 109.47086 * 179.97438 * 5 3 2 36 36 H 1.07993 * 125.89285 * 180.26364 * 8 7 6 37 37 H 0.96998 * 120.00594 * 179.97438 * 10 9 8 38 38 H 1.08990 * 109.47081 * 83.99336 * 16 15 13 39 39 H 1.09009 * 109.46572 * 203.99311 * 16 15 13 40 40 H 1.08998 * 109.46917 * 323.98600 * 16 15 13 41 41 H 1.09004 * 109.46692 * 210.00186 * 17 15 13 42 42 H 1.08997 * 109.47375 * 330.00383 * 17 15 13 43 43 H 0.96998 * 120.00299 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.47522 * 269.99936 * 27 26 6 45 45 H 1.09002 * 109.47356 * 29.99766 * 27 26 6 46 46 H 1.09004 * 109.47186 * 149.99712 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 7 3.5000 1.4443 0.1203 7 7 4.4003 0.8509 -0.7735 8 6 5.6150 1.0607 -0.3352 9 6 5.5302 1.7977 0.8560 10 7 6.6119 2.2285 1.6419 11 6 7.8739 1.9371 1.2692 12 8 8.0758 1.3020 0.2545 13 6 9.0238 2.3955 2.1042 14 8 8.8299 3.1190 3.0592 15 7 10.2771 2.0058 1.7975 16 6 10.5204 1.1982 0.5997 17 6 11.3958 2.3898 2.6620 18 6 11.5973 1.3363 3.7205 19 1 10.9560 0.4678 3.7469 20 6 12.6005 1.4812 4.6551 21 7 13.3812 2.5391 4.6232 22 14 12.8499 0.1756 5.9677 23 1 11.8481 -0.9055 5.7871 24 1 14.2170 -0.3919 5.8479 25 1 12.6835 0.7861 7.3111 26 6 4.2148 2.0196 1.1136 27 6 3.6538 2.7713 2.2930 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.0698 1.5876 -2.1492 34 1 0.5488 2.1253 -1.3969 35 1 1.9981 3.1544 -1.3071 36 1 6.5259 0.7285 -0.8108 37 1 6.4506 2.7357 2.4529 38 1 10.6067 1.8521 -0.2680 39 1 11.4453 0.6346 0.7233 40 1 9.6906 0.5069 0.4528 41 1 12.3022 2.4818 2.0636 42 1 11.1759 3.3455 3.1377 43 1 14.0867 2.6413 5.2810 44 1 3.5612 3.8275 2.0401 45 1 2.6720 2.3708 2.5456 46 1 4.3224 2.6594 3.1466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338832912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:33 Heat of formation + Delta-G solvation = 14.020953 kcal Electronic energy + Delta-G solvation = -27220.980378 eV Core-core repulsion = 23341.079440 eV Total energy + Delta-G solvation = -3879.900937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.65360 -40.10743 -37.94669 -36.73664 -35.47333 -34.23251 -32.67362 -32.52219 -30.86187 -28.87190 -28.05770 -27.10672 -26.04086 -25.11054 -24.23947 -22.69926 -22.09286 -20.22336 -20.10645 -18.92573 -17.17589 -17.11131 -16.63184 -16.30032 -15.78525 -15.60436 -15.30179 -15.12058 -14.98211 -14.35360 -14.31827 -13.93998 -13.60364 -13.34088 -13.20863 -13.03470 -12.87617 -12.65583 -12.52531 -12.34444 -12.23742 -12.12275 -11.97694 -11.87638 -11.46385 -11.28985 -11.26483 -10.97104 -10.76252 -10.70031 -10.69478 -10.44435 -10.21007 -9.64778 -9.31199 -8.74003 -8.48619 -7.82391 -7.63756 -6.09656 -4.15046 1.49688 2.00959 2.19076 2.85594 2.90898 3.28112 3.35490 3.40421 3.82882 4.07431 4.14682 4.38899 4.40702 4.42159 4.57214 4.76978 4.77553 4.84443 4.90763 5.07257 5.09979 5.20595 5.25147 5.26064 5.42579 5.43998 5.54641 5.55714 5.61476 5.68619 5.85104 5.88581 5.98113 6.10071 6.19421 6.56891 6.80124 6.85260 6.92092 7.28816 7.30971 7.40054 7.65023 7.84944 8.02004 8.14016 8.25329 8.65962 8.90754 9.50038 10.98522 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.002472 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.932377 B =11323.379566 C =11616.794273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.165 3.835 4 H 0.100 0.900 5 C -0.162 4.162 6 N -0.362 5.362 7 N -0.285 5.285 8 C 0.055 3.945 9 C 0.002 3.998 10 N -0.618 5.618 11 C 0.510 3.490 12 O -0.512 6.512 13 C 0.498 3.502 14 O -0.528 6.528 15 N -0.561 5.561 16 C 0.068 3.932 17 C 0.240 3.760 18 C -0.529 4.529 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.893 5.893 22 Si 0.900 3.100 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.282 1.282 26 C 0.047 3.953 27 C -0.091 4.091 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.207 0.793 37 H 0.419 0.581 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.040 0.960 42 H 0.049 0.951 43 H 0.264 0.736 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.868 -1.146 -9.524 26.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.063 3.937 4 H 0.117 0.883 5 C -0.220 4.220 6 N -0.148 5.148 7 N -0.106 5.106 8 C -0.132 4.132 9 C -0.103 4.103 10 N -0.265 5.265 11 C 0.293 3.707 12 O -0.388 6.388 13 C 0.278 3.722 14 O -0.406 6.406 15 N -0.292 5.292 16 C -0.075 4.075 17 C 0.122 3.878 18 C -0.568 4.568 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.728 3.272 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.082 4.082 27 C -0.149 4.149 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.223 0.777 37 H 0.256 0.744 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.410 -1.647 -10.562 27.567 hybrid contribution 0.776 -0.099 1.805 1.967 sum -24.633 -1.746 -8.757 26.202 Atomic orbital electron populations 1.21804 0.94474 1.02478 1.02141 1.21874 0.96319 0.95077 1.03823 1.21307 0.74227 0.98040 1.00145 0.88259 1.22179 1.01962 1.00987 0.96864 1.48326 1.05845 1.42757 1.17856 1.77333 0.98540 1.19755 1.14965 1.24508 0.96539 0.98031 0.94136 1.17470 0.86213 1.09151 0.97421 1.42548 1.03272 1.54082 1.26573 1.20797 0.83962 0.79995 0.85911 1.90508 1.84138 1.38509 1.25599 1.19476 0.84032 0.83311 0.85340 1.90728 1.84150 1.36991 1.28780 1.48102 1.06774 1.48845 1.25490 1.22231 1.03512 0.95844 0.85880 1.19530 0.82021 0.97447 0.88816 1.21429 1.15881 1.06584 1.12927 0.92196 1.24937 0.95568 0.95924 0.97612 1.69938 1.19451 1.27638 1.36112 0.86401 0.77934 0.81453 0.81412 1.19730 1.20871 1.20817 1.20339 0.90475 1.02707 0.94682 1.20422 1.01567 0.99363 0.93564 0.92051 0.92004 0.92474 0.90370 0.91376 0.90968 0.90559 0.92078 0.77674 0.74353 0.93280 0.91239 0.88814 0.94165 0.93309 0.92639 0.90096 0.90919 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.67 37.16 0.36 -0.36 16 2 C -0.13 -0.95 5.66 -26.73 -0.15 -1.10 16 3 C 0.16 1.25 3.11 -67.93 -0.21 1.04 16 4 H 0.10 0.56 6.68 -51.93 -0.35 0.21 16 5 C -0.16 -1.10 9.21 37.16 0.34 -0.76 16 6 N -0.36 -4.06 3.28 -50.50 -0.17 -4.23 16 7 N -0.28 -3.93 12.41 30.72 0.38 -3.55 16 8 C 0.05 0.81 10.84 -17.19 -0.19 0.62 16 9 C 0.00 0.03 6.86 -83.96 -0.58 -0.55 16 10 N -0.62 -9.19 5.45 -10.48 -0.06 -9.25 16 11 C 0.51 8.99 7.74 -11.64 -0.09 8.90 16 12 O -0.51 -9.01 10.29 5.45 0.06 -8.95 16 13 C 0.50 10.54 7.73 -11.64 -0.09 10.45 16 14 O -0.53 -12.42 16.05 5.49 0.09 -12.33 16 15 N -0.56 -12.37 2.86 -183.51 -0.52 -12.90 16 16 C 0.07 1.24 9.55 59.85 0.57 1.82 16 17 C 0.24 6.25 5.16 -5.19 -0.03 6.23 16 18 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 19 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 22 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.05 0.54 6.96 -81.95 -0.57 -0.03 16 27 C -0.09 -0.69 9.76 36.00 0.35 -0.34 16 28 H 0.06 0.25 6.56 -51.93 -0.34 -0.09 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.34 6.57 -51.93 -0.34 0.00 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.21 3.12 5.92 -52.49 -0.31 2.81 16 37 H 0.42 5.64 7.56 -40.82 -0.31 5.33 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.24 8.03 -51.92 -0.42 0.83 16 40 H 0.09 1.65 5.35 -51.94 -0.28 1.37 16 41 H 0.04 1.05 8.07 -51.93 -0.42 0.64 16 42 H 0.05 1.40 7.37 -51.93 -0.38 1.01 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.41 7.10 -51.93 -0.37 0.04 16 46 H 0.08 0.63 7.61 -51.93 -0.40 0.23 16 LS Contribution 379.66 15.07 5.72 5.72 Total: -1.00 -32.92 379.66 -6.32 -39.24 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.84 Total: 2.67 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -0.70 Total: 12.36 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.37 Total: -55.31 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: 0.14 Total: -21.28 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.92 -6.32 -39.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338832912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.258 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds