Wall clock time and date at job start Tue Mar 31 2020 12:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47168 * 2 1 4 4 H 1.09001 * 109.46978 * 55.00252 * 3 2 1 5 5 C 1.53002 * 109.47154 * 295.00276 * 3 2 1 6 6 N 1.46491 * 109.47182 * 175.00451 * 3 2 1 7 7 N 1.40055 * 125.99800 * 60.02353 * 6 3 2 8 8 C 1.30830 * 108.36701 * 179.97438 * 7 6 3 9 9 C 1.40333 * 108.20977 * 359.97438 * 8 7 6 10 10 N 1.40479 * 126.11843 * 180.02562 * 9 8 7 11 11 C 1.34779 * 119.99709 * 359.97438 * 10 9 8 12 12 O 1.21399 * 119.99803 * 359.97438 * 11 10 9 13 13 C 1.49323 * 120.00127 * 179.97438 * 11 10 9 14 14 O 1.21363 * 119.99958 * 354.17035 * 13 11 10 15 15 N 1.34781 * 120.00096 * 174.16285 * 13 11 10 16 16 C 1.46500 * 119.99618 * 3.63295 * 15 13 11 17 17 C 1.46501 * 119.99740 * 183.62490 * 15 13 11 18 18 C 1.50702 * 109.46819 * 90.00595 * 17 15 13 19 19 H 1.07992 * 120.00147 * 359.97438 * 18 17 15 20 20 C 1.37879 * 119.99702 * 179.97438 * 18 17 15 21 21 N 1.31513 * 120.00165 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99718 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47208 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47066 * 120.00227 * 22 20 18 25 25 H 1.48504 * 109.47134 * 239.99660 * 22 20 18 26 26 C 1.35230 * 125.99010 * 240.00055 * 6 3 2 27 27 C 1.50693 * 126.18170 * 0.04171 * 26 6 3 28 28 H 1.08999 * 109.47467 * 59.99758 * 1 2 3 29 29 H 1.09002 * 109.47037 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47238 * 299.99791 * 1 2 3 31 31 H 1.09005 * 109.46591 * 240.00075 * 2 1 3 32 32 H 1.08999 * 109.47467 * 120.00241 * 2 1 3 33 33 H 1.09001 * 109.47158 * 299.99866 * 5 3 2 34 34 H 1.09006 * 109.47117 * 59.99741 * 5 3 2 35 35 H 1.09002 * 109.47086 * 179.97438 * 5 3 2 36 36 H 1.07993 * 125.89285 * 180.26364 * 8 7 6 37 37 H 0.96998 * 120.00594 * 179.97438 * 10 9 8 38 38 H 1.08990 * 109.47081 * 83.99336 * 16 15 13 39 39 H 1.09009 * 109.46572 * 203.99311 * 16 15 13 40 40 H 1.08998 * 109.46917 * 323.98600 * 16 15 13 41 41 H 1.09004 * 109.46692 * 210.00186 * 17 15 13 42 42 H 1.08997 * 109.47375 * 330.00383 * 17 15 13 43 43 H 0.96998 * 120.00299 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.47522 * 269.99936 * 27 26 6 45 45 H 1.09002 * 109.47356 * 29.99766 * 27 26 6 46 46 H 1.09004 * 109.47186 * 149.99712 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 7 3.5000 1.4443 0.1203 7 7 4.4003 0.8509 -0.7735 8 6 5.6150 1.0607 -0.3352 9 6 5.5302 1.7977 0.8560 10 7 6.6119 2.2285 1.6419 11 6 7.8739 1.9371 1.2692 12 8 8.0758 1.3020 0.2545 13 6 9.0238 2.3955 2.1042 14 8 8.8299 3.1190 3.0592 15 7 10.2771 2.0058 1.7975 16 6 10.5204 1.1982 0.5997 17 6 11.3958 2.3898 2.6620 18 6 11.5973 1.3363 3.7205 19 1 10.9560 0.4678 3.7469 20 6 12.6005 1.4812 4.6551 21 7 13.3812 2.5391 4.6232 22 14 12.8499 0.1756 5.9677 23 1 11.8481 -0.9055 5.7871 24 1 14.2170 -0.3919 5.8479 25 1 12.6835 0.7861 7.3111 26 6 4.2148 2.0196 1.1136 27 6 3.6538 2.7713 2.2930 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.0698 1.5876 -2.1492 34 1 0.5488 2.1253 -1.3969 35 1 1.9981 3.1544 -1.3071 36 1 6.5259 0.7285 -0.8108 37 1 6.4506 2.7357 2.4529 38 1 10.6067 1.8521 -0.2680 39 1 11.4453 0.6346 0.7233 40 1 9.6906 0.5069 0.4528 41 1 12.3022 2.4818 2.0636 42 1 11.1759 3.3455 3.1377 43 1 14.0867 2.6413 5.2810 44 1 3.5612 3.8275 2.0401 45 1 2.6720 2.3708 2.5456 46 1 4.3224 2.6594 3.1466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338832912.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:32 Heat of formation + Delta-G solvation = -7.744862 kcal Electronic energy + Delta-G solvation = -27221.924214 eV Core-core repulsion = 23341.079440 eV Total energy + Delta-G solvation = -3880.844774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.69190 -41.54683 -39.48272 -37.55587 -37.00263 -35.62972 -34.63937 -33.45661 -31.59659 -30.11115 -29.52939 -28.15985 -27.49907 -26.20737 -25.54189 -24.08352 -23.19018 -21.35892 -21.19632 -20.09716 -18.74612 -18.57132 -18.21923 -17.57669 -17.09569 -16.86216 -16.66071 -16.36964 -16.04644 -15.90290 -15.27196 -15.18293 -14.82047 -14.52494 -14.20689 -13.93930 -13.85567 -13.83476 -13.58958 -13.51709 -13.36645 -13.18439 -13.06170 -12.92398 -12.73229 -12.61640 -12.56954 -12.24803 -12.18899 -12.13347 -11.93949 -11.71552 -11.63869 -11.54638 -10.65570 -10.30832 -10.23059 -9.59385 -8.75252 -8.24386 -6.39223 0.22580 0.85020 1.18955 1.39319 1.40373 1.52697 1.60721 1.70363 2.30080 2.39303 2.67157 3.06146 3.34710 3.44212 3.64322 3.83408 3.90727 4.08719 4.13632 4.36205 4.41511 4.46525 4.48350 4.61778 4.67166 4.69813 4.74286 4.83904 4.85756 4.90915 4.97503 5.03127 5.08160 5.11614 5.15117 5.19976 5.30234 5.41186 5.44718 5.68390 5.72677 5.99145 6.00645 6.07781 6.41086 6.62026 6.67142 6.81089 7.02059 7.31465 8.83445 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024030 B = 0.002472 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.932377 B =11323.379566 C =11616.794273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.153 3.847 4 H 0.131 0.869 5 C -0.158 4.158 6 N -0.354 5.354 7 N -0.304 5.304 8 C 0.039 3.961 9 C -0.036 4.036 10 N -0.600 5.600 11 C 0.515 3.485 12 O -0.515 6.515 13 C 0.493 3.507 14 O -0.559 6.559 15 N -0.571 5.571 16 C 0.072 3.928 17 C 0.254 3.746 18 C -0.546 4.546 19 H 0.054 0.946 20 C 0.012 3.988 21 N -0.924 5.924 22 Si 0.970 3.030 23 H -0.269 1.269 24 H -0.271 1.271 25 H -0.278 1.278 26 C 0.070 3.930 27 C -0.094 4.094 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.105 0.895 35 H 0.056 0.944 36 H 0.194 0.806 37 H 0.426 0.574 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.033 0.967 42 H 0.015 0.985 43 H 0.269 0.731 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.650 -1.590 -8.922 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.148 0.852 5 C -0.215 4.215 6 N -0.139 5.139 7 N -0.127 5.127 8 C -0.147 4.147 9 C -0.140 4.140 10 N -0.246 5.246 11 C 0.298 3.702 12 O -0.392 6.392 13 C 0.275 3.725 14 O -0.439 6.439 15 N -0.302 5.302 16 C -0.070 4.070 17 C 0.134 3.866 18 C -0.585 4.585 19 H 0.072 0.928 20 C -0.188 4.188 21 N -0.563 5.563 22 Si 0.794 3.206 23 H -0.193 1.193 24 H -0.196 1.196 25 H -0.203 1.203 26 C -0.061 4.061 27 C -0.152 4.152 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.123 0.877 35 H 0.075 0.925 36 H 0.211 0.789 37 H 0.264 0.736 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.051 0.949 42 H 0.033 0.967 43 H 0.078 0.922 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -28.245 -2.106 -10.003 30.037 hybrid contribution 1.473 0.080 1.569 2.154 sum -26.772 -2.026 -8.434 28.142 Atomic orbital electron populations 1.21784 0.92232 1.02993 1.03359 1.21818 0.98146 0.94367 1.02305 1.21795 0.72111 0.98887 1.01883 0.85152 1.22159 1.03682 1.00151 0.95526 1.48781 1.07002 1.41189 1.16931 1.77292 0.98641 1.20690 1.16037 1.24385 0.96676 0.98834 0.94800 1.17623 0.86863 1.11489 0.97978 1.42284 1.02533 1.53194 1.26608 1.19941 0.83938 0.80757 0.85601 1.90511 1.84170 1.38997 1.25485 1.20080 0.84663 0.82471 0.85271 1.90692 1.84770 1.38182 1.30230 1.48086 1.06448 1.49545 1.26111 1.22359 1.03843 0.95902 0.84898 1.19063 0.83054 0.95587 0.88897 1.21649 1.16117 1.06795 1.13929 0.92802 1.25828 0.95120 0.98106 0.99756 1.70042 1.19932 1.29302 1.37073 0.85335 0.78322 0.78644 0.78311 1.19298 1.19575 1.20324 1.20942 0.89583 1.00637 0.94897 1.20655 1.02831 0.99959 0.91771 0.91072 0.91954 0.90950 0.92393 0.92461 0.92982 0.87684 0.92451 0.78906 0.73583 0.91480 0.91212 0.87967 0.94926 0.96737 0.92196 0.88240 0.88162 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.67 71.98 0.70 -0.25 16 2 C -0.13 -1.58 5.66 30.59 0.17 -1.41 16 3 C 0.15 1.91 3.11 44.99 0.14 2.05 16 4 H 0.13 0.87 6.68 -2.39 -0.02 0.85 16 5 C -0.16 -1.77 9.21 71.98 0.66 -1.11 16 6 N -0.35 -7.34 3.28 -313.68 -1.03 -8.37 16 7 N -0.30 -8.36 12.41 -56.72 -0.70 -9.07 16 8 C 0.04 1.16 10.84 85.35 0.93 2.08 16 9 C -0.04 -0.98 6.86 37.71 0.26 -0.72 16 10 N -0.60 -17.66 5.45 -305.42 -1.66 -19.33 16 11 C 0.52 18.34 7.74 87.23 0.68 19.01 16 12 O -0.51 -18.28 10.29 -3.40 -0.03 -18.32 16 13 C 0.49 21.37 7.73 87.23 0.67 22.04 16 14 O -0.56 -27.05 16.05 -3.29 -0.05 -27.11 16 15 N -0.57 -25.85 2.86 -852.87 -2.44 -28.28 16 16 C 0.07 2.62 9.55 127.77 1.22 3.84 16 17 C 0.25 13.72 5.16 85.63 0.44 14.16 16 18 C -0.55 -31.30 9.39 25.60 0.24 -31.06 16 19 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 20 C 0.01 0.65 5.46 84.66 0.46 1.12 16 21 N -0.92 -54.84 13.29 21.45 0.28 -54.56 16 22 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 C 0.07 1.46 6.96 41.48 0.29 1.75 16 27 C -0.09 -1.10 9.76 71.23 0.70 -0.40 16 28 H 0.07 0.34 6.56 -2.39 -0.02 0.32 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 0.58 6.57 -2.38 -0.02 0.56 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.19 6.09 5.92 -2.91 -0.02 6.07 16 37 H 0.43 11.22 7.56 -92.71 -0.70 10.52 16 38 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.07 2.52 8.03 -2.38 -0.02 2.50 16 40 H 0.10 3.60 5.35 -2.50 -0.01 3.59 16 41 H 0.03 1.78 8.07 -2.38 -0.02 1.76 16 42 H 0.01 0.87 7.37 -2.39 -0.02 0.86 16 43 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 44 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.10 0.65 7.10 -2.39 -0.02 0.64 16 46 H 0.09 1.04 7.61 -2.38 -0.02 1.03 16 Total: -1.00 -73.08 379.66 4.24 -68.83 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.30 Total: 18.68 kcal Atomic # 6 Polarization: 23.57 SS G_CDS: 7.55 Total: 31.12 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -5.55 Total: -119.61 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -0.09 Total: -45.43 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -73.08 4.24 -68.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338832912.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.090 kcal (2) G-P(sol) polarization free energy of solvation -73.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds