Wall clock time and date at job start Tue Mar 31 2020 12:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46601 * 2 1 4 4 H 1.09005 * 109.47016 * 304.99436 * 3 2 1 5 5 C 1.52995 * 109.47561 * 65.00136 * 3 2 1 6 6 N 1.46507 * 109.46746 * 184.99899 * 3 2 1 7 7 N 1.40049 * 125.99666 * 299.95662 * 6 3 2 8 8 C 1.30827 * 108.36928 * 180.02562 * 7 6 3 9 9 C 1.40344 * 108.20449 * 0.02562 * 8 7 6 10 10 N 1.40486 * 126.10887 * 180.02562 * 9 8 7 11 11 C 1.34774 * 120.00029 * 359.95799 * 10 9 8 12 12 O 1.21400 * 120.00055 * 0.02562 * 11 10 9 13 13 C 1.49327 * 119.99721 * 180.02562 * 11 10 9 14 14 O 1.21366 * 120.00043 * 354.16457 * 13 11 10 15 15 N 1.34773 * 120.00093 * 174.16984 * 13 11 10 16 16 C 1.46504 * 119.99864 * 3.62053 * 15 13 11 17 17 C 1.46499 * 120.00245 * 183.62252 * 15 13 11 18 18 C 1.50706 * 109.46986 * 89.99489 * 17 15 13 19 19 H 1.08002 * 119.99972 * 0.02562 * 18 17 15 20 20 C 1.37877 * 119.99814 * 179.97438 * 18 17 15 21 21 N 1.31513 * 119.99800 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 120.00125 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46701 * 89.99813 * 22 20 18 24 24 H 1.48496 * 109.46846 * 209.99743 * 22 20 18 25 25 H 1.48499 * 109.46822 * 329.99984 * 22 20 18 26 26 C 1.35227 * 125.99001 * 119.99922 * 6 3 2 27 27 C 1.50695 * 126.18251 * 359.70145 * 26 6 3 28 28 H 1.09000 * 109.47444 * 299.99974 * 1 2 3 29 29 H 1.08997 * 109.47248 * 60.00432 * 1 2 3 30 30 H 1.09001 * 109.46779 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47012 * 240.00333 * 2 1 3 32 32 H 1.08997 * 109.47248 * 119.99568 * 2 1 3 33 33 H 1.08993 * 109.47406 * 179.97438 * 5 3 2 34 34 H 1.09009 * 109.46824 * 300.00063 * 5 3 2 35 35 H 1.09005 * 109.47132 * 59.99245 * 5 3 2 36 36 H 1.07997 * 125.89409 * 180.02562 * 8 7 6 37 37 H 0.96999 * 119.99230 * 179.97438 * 10 9 8 38 38 H 1.09001 * 109.46892 * 84.00171 * 16 15 13 39 39 H 1.09002 * 109.46848 * 203.99946 * 16 15 13 40 40 H 1.08995 * 109.47053 * 323.99491 * 16 15 13 41 41 H 1.08999 * 109.47556 * 209.99711 * 17 15 13 42 42 H 1.09002 * 109.47345 * 330.00079 * 17 15 13 43 43 H 0.96997 * 120.00034 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.47118 * 90.00351 * 27 26 6 45 45 H 1.09002 * 109.47500 * 210.00271 * 27 26 6 46 46 H 1.08998 * 109.47232 * 330.00011 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 1.6352 2.1267 1.3073 6 7 3.5000 1.4444 -0.1204 7 7 4.4004 0.8513 0.7735 8 6 5.6150 1.0610 0.3352 9 6 5.5301 1.7977 -0.8564 10 7 6.6119 2.2274 -1.6430 11 6 7.8738 1.9364 -1.2699 12 8 8.0758 1.3025 -0.2544 13 6 9.0237 2.3937 -2.1058 14 8 8.8208 2.9340 -3.1734 15 7 10.2867 2.2062 -1.6747 16 6 10.5344 1.4835 -0.4246 17 6 11.4121 2.7251 -2.4561 18 6 11.7337 4.1263 -2.0042 19 1 11.1577 4.5844 -1.2137 20 6 12.7639 4.8232 -2.5993 21 7 13.0449 6.0458 -2.2046 22 14 13.7606 4.0306 -3.9661 23 1 13.1308 4.3322 -5.2766 24 1 15.1442 4.5695 -3.9461 25 1 13.7989 2.5602 -3.7620 26 6 4.2148 2.0197 -1.1137 27 6 3.6535 2.7668 -2.2960 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.9988 3.1541 1.3075 34 1 0.5488 2.1253 1.3969 35 1 2.0698 1.5876 2.1492 36 1 6.5258 0.7253 0.8086 37 1 6.4504 2.7337 -2.4544 38 1 10.5362 0.4110 -0.6192 39 1 11.5013 1.7808 -0.0186 40 1 9.7501 1.7212 0.2940 41 1 12.2828 2.0865 -2.3075 42 1 11.1460 2.7363 -3.5131 43 1 13.7694 6.5362 -2.6234 44 1 3.5569 3.8233 -2.0457 45 1 4.3240 2.6551 -3.1481 46 1 2.6736 2.3624 -2.5494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338832913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:35 Heat of formation + Delta-G solvation = -4.540761 kcal Electronic energy + Delta-G solvation = -27242.100030 eV Core-core repulsion = 23361.394196 eV Total energy + Delta-G solvation = -3880.705834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.70180 -41.57919 -39.52619 -37.56909 -37.04106 -35.63529 -34.62719 -33.46347 -31.60549 -30.70020 -29.56859 -28.17781 -27.53733 -26.12306 -25.49275 -23.92365 -23.12903 -21.33571 -21.19973 -20.10533 -19.17370 -18.60686 -18.24312 -17.61633 -17.17169 -16.82704 -16.62821 -16.37035 -16.03354 -15.91460 -15.33792 -15.11590 -14.93142 -14.52306 -14.38737 -13.95700 -13.92816 -13.84810 -13.70407 -13.54640 -13.46645 -13.19754 -13.08334 -13.00581 -12.73480 -12.56956 -12.46962 -12.27902 -12.17254 -11.99259 -11.90686 -11.74280 -11.66700 -11.54997 -10.82766 -10.35546 -10.23710 -9.58380 -8.75914 -8.33652 -6.40843 0.20438 0.84165 1.16269 1.37325 1.40057 1.49086 1.58158 1.69047 2.30158 2.32487 2.60876 3.00277 3.31780 3.43611 3.63649 3.83058 3.90201 4.08240 4.13310 4.35511 4.41127 4.43221 4.48060 4.61318 4.63890 4.66599 4.71003 4.74496 4.84254 4.86980 4.87816 4.97141 5.02823 5.07977 5.11491 5.18800 5.29768 5.38406 5.41275 5.42149 5.69305 5.96721 6.05259 6.19831 6.35528 6.59759 6.61198 6.77500 6.97362 7.23568 8.82957 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030634 B = 0.002430 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.801333 B =11520.532808 C =11773.613863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.153 3.847 4 H 0.131 0.869 5 C -0.158 4.158 6 N -0.354 5.354 7 N -0.304 5.304 8 C 0.039 3.961 9 C -0.036 4.036 10 N -0.600 5.600 11 C 0.514 3.486 12 O -0.514 6.514 13 C 0.496 3.504 14 O -0.555 6.555 15 N -0.569 5.569 16 C 0.070 3.930 17 C 0.219 3.781 18 C -0.542 4.542 19 H 0.029 0.971 20 C 0.013 3.987 21 N -0.942 5.942 22 Si 0.950 3.050 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.237 1.237 26 C 0.070 3.930 27 C -0.094 4.094 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.051 0.949 36 H 0.195 0.805 37 H 0.426 0.574 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.035 0.965 43 H 0.270 0.730 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.458 -12.022 1.782 29.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.053 3.947 4 H 0.149 0.851 5 C -0.216 4.216 6 N -0.139 5.139 7 N -0.127 5.127 8 C -0.147 4.147 9 C -0.140 4.140 10 N -0.246 5.246 11 C 0.296 3.704 12 O -0.391 6.391 13 C 0.278 3.722 14 O -0.435 6.435 15 N -0.299 5.299 16 C -0.072 4.072 17 C 0.098 3.902 18 C -0.581 4.581 19 H 0.047 0.953 20 C -0.185 4.185 21 N -0.582 5.582 22 Si 0.772 3.228 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.160 1.160 26 C -0.061 4.061 27 C -0.152 4.152 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.070 0.930 36 H 0.211 0.789 37 H 0.264 0.736 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -27.098 -12.582 2.863 30.013 hybrid contribution 1.557 0.849 -1.175 2.128 sum -25.540 -11.734 1.688 28.157 Atomic orbital electron populations 1.21786 0.92257 1.03020 1.03328 1.21812 0.98112 0.94236 1.02373 1.21801 0.72104 0.98988 1.01789 0.85150 1.22164 1.03699 1.00107 0.95638 1.48787 1.07009 1.41217 1.16890 1.77289 0.98652 1.20746 1.15971 1.24390 0.96682 0.98878 0.94752 1.17622 0.86865 1.11495 0.98008 1.42281 1.02540 1.53357 1.26447 1.19928 0.83958 0.80943 0.85535 1.90519 1.84016 1.39332 1.25234 1.20062 0.84695 0.81023 0.86444 1.90691 1.84999 1.44107 1.23698 1.47829 1.05185 1.52248 1.24649 1.22397 1.03652 0.96179 0.84929 1.19628 0.84873 0.93500 0.92223 1.21462 1.16714 0.99373 1.20518 0.95299 1.25857 0.98069 0.95124 0.99469 1.70045 1.31511 1.12513 1.44113 0.85688 0.77736 0.80583 0.78822 1.19544 1.20187 1.15995 1.20944 0.89601 1.00575 0.94933 1.20656 1.02923 0.99903 0.91749 0.91177 0.90945 0.91867 0.92274 0.92391 0.92632 0.87647 0.92987 0.78892 0.73569 0.90606 0.91112 0.88447 0.92282 0.94669 0.92115 0.88539 0.89182 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.67 71.98 0.70 -0.22 16 2 C -0.13 -1.52 5.66 30.60 0.17 -1.35 16 3 C 0.15 1.93 3.11 44.99 0.14 2.07 16 4 H 0.13 0.88 6.68 -2.38 -0.02 0.87 16 5 C -0.16 -1.88 9.21 71.98 0.66 -1.21 16 6 N -0.35 -7.38 3.28 -313.66 -1.03 -8.41 16 7 N -0.30 -8.39 12.41 -56.72 -0.70 -9.09 16 8 C 0.04 1.16 10.84 85.36 0.93 2.08 16 9 C -0.04 -0.99 6.86 37.71 0.26 -0.73 16 10 N -0.60 -17.51 5.45 -305.42 -1.66 -19.17 16 11 C 0.51 18.00 7.74 87.23 0.68 18.68 16 12 O -0.51 -18.04 10.29 -3.40 -0.04 -18.07 16 13 C 0.50 20.71 7.73 87.23 0.67 21.39 16 14 O -0.56 -25.67 16.05 -3.30 -0.05 -25.72 16 15 N -0.57 -24.39 2.86 -852.86 -2.44 -26.83 16 16 C 0.07 2.45 9.55 127.77 1.22 3.67 16 17 C 0.22 10.57 4.23 85.64 0.36 10.93 16 18 C -0.54 -31.63 9.94 25.60 0.25 -31.38 16 19 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 20 C 0.01 0.78 5.47 84.65 0.46 1.24 16 21 N -0.94 -58.88 13.96 21.45 0.30 -58.58 16 22 Si 0.95 43.24 27.47 68.60 1.88 45.12 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 26 C 0.07 1.47 6.96 41.48 0.29 1.76 16 27 C -0.09 -1.10 9.76 71.23 0.70 -0.41 16 28 H 0.07 0.33 6.57 -2.39 -0.02 0.32 16 29 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.11 0.63 6.57 -2.38 -0.02 0.62 16 35 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.19 6.09 5.92 -2.91 -0.02 6.07 16 37 H 0.43 11.08 7.56 -92.71 -0.70 10.37 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.07 2.45 8.03 -2.39 -0.02 2.43 16 40 H 0.10 3.42 5.35 -2.50 -0.01 3.41 16 41 H 0.06 2.60 7.13 -2.39 -0.02 2.58 16 42 H 0.04 1.75 6.80 -2.39 -0.02 1.73 16 43 H 0.27 15.62 8.31 -92.71 -0.77 14.84 16 44 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.09 1.02 7.60 -2.39 -0.02 1.00 16 46 H 0.10 0.64 7.11 -2.39 -0.02 0.62 16 Total: -1.00 -76.37 376.07 4.00 -72.37 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.25 Total: 21.86 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: 7.49 Total: 26.52 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -5.54 Total: -122.08 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -0.09 Total: -43.80 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.12 kcal Total: -76.37 4.00 -72.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338832913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.833 kcal (2) G-P(sol) polarization free energy of solvation -76.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds