Wall clock time and date at job start Tue Mar 31 2020 14:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 110.28568 * 2 1 4 4 C 1.54265 * 110.32163 * 237.88128 * 2 1 3 5 5 C 1.54380 * 105.05553 * 240.99847 * 4 2 1 6 6 H 1.08998 * 110.41123 * 94.93008 * 5 4 2 7 7 C 1.50700 * 110.41024 * 217.36754 * 5 4 2 8 8 C 1.38671 * 120.42028 * 255.17512 * 7 5 4 9 9 C 1.38626 * 118.42319 * 180.02562 * 8 7 5 10 10 C 1.38233 * 119.16118 * 359.97438 * 9 8 7 11 11 N 1.31853 * 120.76171 * 0.02562 * 10 9 8 12 12 C 1.31890 * 121.72474 * 359.69841 * 11 10 9 13 13 N 1.48559 * 104.59614 * 336.14758 * 5 4 2 14 14 C 1.46900 * 110.99978 * 159.04245 * 13 5 4 15 15 C 1.50697 * 109.47470 * 169.99903 * 14 13 5 16 16 C 1.38643 * 119.74877 * 89.99704 * 15 14 13 17 17 C 1.37613 * 120.24721 * 180.02562 * 16 15 14 18 18 C 1.40709 * 119.74697 * 359.97102 * 17 16 15 19 19 C 1.41399 * 120.24578 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00010 * 335.72332 * 19 18 17 21 21 C 1.39946 * 119.99947 * 155.72470 * 19 18 17 22 22 N 1.30821 * 120.00035 * 342.29492 * 21 19 18 23 23 Si 1.86800 * 120.00069 * 162.30304 * 21 19 18 24 24 H 1.48496 * 109.47266 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.46900 * 299.99576 * 23 21 19 26 26 H 1.48504 * 109.47251 * 59.99432 * 23 21 19 27 27 C 1.40719 * 119.51207 * 0.28087 * 18 17 16 28 28 C 1.37617 * 119.73948 * 359.44473 * 27 18 17 29 29 C 1.48558 * 104.22045 * 39.48541 * 13 5 4 30 30 H 1.08998 * 109.47086 * 182.12232 * 1 2 3 31 31 H 1.08995 * 109.47225 * 302.12097 * 1 2 3 32 32 H 1.08997 * 109.47144 * 62.12453 * 1 2 3 33 33 H 1.08997 * 110.32621 * 122.10458 * 4 2 1 34 34 H 1.08999 * 110.40969 * 359.93503 * 4 2 1 35 35 H 1.08003 * 120.79023 * 0.02578 * 8 7 5 36 36 H 1.08000 * 120.42252 * 179.97438 * 9 8 7 37 37 H 1.07995 * 119.61896 * 180.02562 * 10 9 8 38 38 H 1.08006 * 119.61599 * 180.30944 * 12 11 10 39 39 H 1.09004 * 109.47413 * 49.99360 * 14 13 5 40 40 H 1.09008 * 109.46895 * 290.00054 * 14 13 5 41 41 H 1.07997 * 119.87202 * 0.02562 * 16 15 14 42 42 H 1.08009 * 120.12478 * 180.02562 * 17 16 15 43 43 H 0.97004 * 120.00360 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.12475 * 179.72303 * 27 18 17 45 45 H 1.08008 * 119.87000 * 180.27116 * 28 27 18 46 46 H 1.08996 * 110.41161 * 79.29957 * 29 13 5 47 47 H 1.09001 * 110.40776 * 201.73842 * 29 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0658 -0.7691 -1.2252 5 6 2.8829 -1.9399 -0.6379 6 1 2.2684 -2.8379 -0.5739 7 6 4.1080 -2.1986 -1.4765 8 6 4.1579 -3.2920 -2.3280 9 6 5.3054 -3.4908 -3.0799 10 6 6.3542 -2.5986 -2.9572 11 7 6.2716 -1.5695 -2.1370 12 6 5.1937 -1.3464 -1.4106 13 7 3.2721 -1.4806 0.7202 14 6 3.6121 -2.6193 1.5838 15 6 4.2321 -2.1139 2.8609 16 6 3.4246 -1.8246 3.9502 17 6 3.9799 -1.3620 5.1212 18 6 5.3727 -1.1834 5.2107 19 6 5.9545 -0.7091 6.4090 20 1 5.3659 -0.1247 7.1007 21 6 7.2931 -0.9969 6.6987 22 7 7.9050 -1.9662 6.0683 23 14 8.2060 0.0028 7.9858 24 1 9.5989 -0.4977 8.1050 25 1 8.2258 1.4313 7.5805 26 1 7.5186 -0.1307 9.2954 27 6 6.1819 -1.4751 4.0970 28 6 5.6055 -1.9420 2.9379 29 6 2.0684 -0.7708 1.2244 30 1 -0.3633 -1.0269 0.0381 31 1 -0.3633 0.5464 0.8703 32 1 -0.3633 0.4805 -0.9084 33 1 2.7067 -0.1243 -1.8265 34 1 1.2398 -1.1483 -1.8270 35 1 3.3226 -3.9724 -2.4036 36 1 5.3792 -4.3321 -3.7531 37 1 7.2514 -2.7462 -3.5398 38 1 5.1608 -0.4899 -0.7534 39 1 4.3202 -3.2679 1.0679 40 1 2.7076 -3.1815 1.8166 41 1 2.3559 -1.9630 3.8793 42 1 3.3490 -1.1377 5.9688 43 1 8.8329 -2.1655 6.2688 44 1 7.2516 -1.3373 4.1533 45 1 6.2251 -2.1707 2.0832 46 1 1.3265 -1.4858 1.5799 47 1 2.3414 -0.0776 2.0200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347173319.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:49 Heat of formation + Delta-G solvation = 49.278296 kcal Electronic energy + Delta-G solvation = -26636.279816 eV Core-core repulsion = 23168.757014 eV Total energy + Delta-G solvation = -3467.522801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.41988 -38.87730 -37.36637 -34.17730 -33.33291 -32.65172 -31.70919 -29.98432 -29.21528 -28.38558 -26.87049 -25.46886 -23.79060 -23.48321 -22.57717 -20.99432 -20.52818 -19.89519 -19.63520 -17.25048 -17.12577 -16.36568 -16.03861 -15.34898 -15.08836 -14.51364 -14.36663 -14.22060 -13.91428 -13.76884 -13.45928 -13.19761 -13.03827 -12.96657 -12.69696 -12.48923 -12.36973 -12.06907 -11.88435 -11.76104 -11.48346 -11.16284 -10.97917 -10.93189 -10.89791 -10.74537 -10.54360 -10.41966 -10.27621 -9.75413 -9.57795 -9.36339 -9.32940 -9.09374 -8.85004 -8.19215 -7.39625 -7.25981 -6.72606 -4.31283 1.17565 1.32761 2.78433 3.08520 3.10933 3.12264 3.21547 3.85750 3.95636 4.18823 4.47634 4.66343 4.68198 4.73253 4.83594 4.94202 5.01831 5.08189 5.10038 5.29901 5.38211 5.50956 5.55443 5.63167 5.69946 5.75087 5.81225 5.83573 5.85322 5.93473 6.01462 6.04437 6.14359 6.21341 6.26669 6.34472 6.35739 6.39322 6.48539 6.78923 6.99370 7.07580 7.14037 7.32722 7.36161 7.43579 7.65850 7.91092 8.09509 8.09779 8.19237 8.34401 8.68796 8.93499 9.02243 10.21894 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013104 B = 0.003404 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.310923 B = 8222.444848 C = 9711.481498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.080 0.920 4 C -0.109 4.109 5 C 0.100 3.900 6 H 0.056 0.944 7 C -0.117 4.117 8 C -0.077 4.077 9 C -0.179 4.179 10 C 0.090 3.910 11 N -0.487 5.487 12 C 0.134 3.866 13 N -0.494 5.494 14 C 0.112 3.888 15 C -0.204 4.204 16 C -0.082 4.082 17 C -0.228 4.228 18 C 0.113 3.887 19 C -0.465 4.465 20 H 0.076 0.924 21 C 0.077 3.923 22 N -0.793 5.793 23 Si 0.907 3.093 24 H -0.279 1.279 25 H -0.263 1.263 26 H -0.266 1.266 27 C -0.166 4.166 28 C -0.078 4.078 29 C 0.045 3.955 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.150 0.850 38 H 0.164 0.836 39 H 0.062 0.938 40 H 0.026 0.974 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.280 0.720 44 H 0.116 0.884 45 H 0.084 0.916 46 H 0.041 0.959 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.165 -0.968 -15.633 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.098 0.902 4 C -0.147 4.147 5 C -0.009 4.009 6 H 0.074 0.926 7 C -0.120 4.120 8 C -0.104 4.104 9 C -0.199 4.199 10 C -0.067 4.067 11 N -0.195 5.195 12 C -0.024 4.024 13 N -0.217 5.217 14 C -0.014 4.014 15 C -0.206 4.206 16 C -0.101 4.101 17 C -0.248 4.248 18 C 0.111 3.889 19 C -0.494 4.494 20 H 0.094 0.906 21 C -0.141 4.141 22 N -0.418 5.418 23 Si 0.731 3.269 24 H -0.204 1.204 25 H -0.188 1.188 26 H -0.191 1.191 27 C -0.185 4.185 28 C -0.097 4.097 29 C -0.083 4.083 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.168 0.832 38 H 0.181 0.819 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.134 0.866 45 H 0.102 0.898 46 H 0.059 0.941 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.746 -0.201 -15.572 17.393 hybrid contribution -0.878 -0.989 0.639 1.469 sum -8.623 -1.190 -14.933 17.285 Atomic orbital electron populations 1.21853 0.94929 1.01606 1.01656 1.21923 0.95163 1.00111 0.94564 0.90171 1.22426 0.98683 0.96181 0.97403 1.21452 0.91756 0.97206 0.90481 0.92608 1.20698 0.97451 0.96015 0.97826 1.21440 0.97878 0.96313 0.94733 1.22035 0.94953 1.01279 1.01646 1.22752 0.98041 0.90469 0.95435 1.67792 1.25979 1.19818 1.05921 1.22782 0.87140 0.98353 0.94086 1.65467 1.32389 1.23776 1.00089 1.20870 0.97736 0.90458 0.92365 1.18751 0.93543 1.14440 0.93882 1.20307 0.96287 0.99846 0.93681 1.20910 0.95471 1.11229 0.97149 1.17601 0.90826 0.88049 0.92430 1.19562 0.95420 1.30046 1.04391 0.90604 1.25893 0.97754 0.93678 0.96744 1.69820 1.12364 1.22546 1.37090 0.86400 0.78397 0.81087 0.81016 1.20356 1.18806 1.19076 1.21298 0.99969 1.05241 0.92038 1.20458 0.93359 0.99267 0.96602 1.23134 0.90701 0.97467 0.97021 0.92886 0.92432 0.92722 0.91052 0.91380 0.85407 0.85211 0.83231 0.81879 0.91963 0.95577 0.90087 0.89285 0.90862 0.86603 0.89777 0.94071 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.93 37.16 0.33 -0.97 16 2 C -0.10 -1.09 3.65 -89.24 -0.33 -1.41 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.11 -1.16 6.17 -25.35 -0.16 -1.31 16 5 C 0.10 1.25 2.47 -67.22 -0.17 1.08 16 6 H 0.06 0.67 7.91 -51.93 -0.41 0.26 16 7 C -0.12 -1.52 4.54 -104.48 -0.47 -1.99 16 8 C -0.08 -0.86 9.84 -39.28 -0.39 -1.24 16 9 C -0.18 -1.88 10.11 -39.44 -0.40 -2.27 16 10 C 0.09 1.08 11.18 -17.54 -0.20 0.89 16 11 N -0.49 -7.30 10.36 -13.25 -0.14 -7.43 16 12 C 0.13 1.97 10.33 -17.55 -0.18 1.79 16 13 N -0.49 -7.49 4.35 -224.94 -0.98 -8.46 16 14 C 0.11 1.96 4.92 -4.98 -0.02 1.94 16 15 C -0.20 -4.39 5.22 -104.33 -0.54 -4.93 16 16 C -0.08 -1.81 8.88 -39.66 -0.35 -2.16 16 17 C -0.23 -5.59 9.80 -38.88 -0.38 -5.97 16 18 C 0.11 3.05 5.57 -106.82 -0.60 2.45 16 19 C -0.46 -12.47 9.05 -37.74 -0.34 -12.82 16 20 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 21 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 22 N -0.79 -20.82 10.95 55.55 0.61 -20.21 16 23 Si 0.91 18.92 29.59 -169.99 -5.03 13.89 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 27 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 28 C -0.08 -1.85 9.67 -39.67 -0.38 -2.23 16 29 C 0.04 0.62 5.24 -2.19 -0.01 0.61 16 30 H 0.05 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.78 7.71 -51.93 -0.40 0.38 16 34 H 0.07 0.62 7.71 -51.93 -0.40 0.22 16 35 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.16 2.55 7.77 -52.48 -0.41 2.14 16 39 H 0.06 1.11 7.72 -51.93 -0.40 0.71 16 40 H 0.03 0.44 7.71 -51.92 -0.40 0.03 16 41 H 0.08 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 43 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 44 H 0.12 3.19 6.16 -52.49 -0.32 2.87 16 45 H 0.08 1.91 8.06 -52.48 -0.42 1.48 16 46 H 0.04 0.56 7.44 -51.93 -0.39 0.17 16 47 H 0.09 1.39 7.88 -51.93 -0.41 0.98 16 LS Contribution 381.08 15.07 5.74 5.74 Total: -1.00 -28.31 381.08 -12.12 -40.44 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.32 Total: 7.45 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: -5.01 Total: -31.41 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.51 Total: -36.11 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.31 -12.12 -40.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347173319.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.716 kcal (2) G-P(sol) polarization free energy of solvation -28.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds