Wall clock time and date at job start Tue Mar 31 2020 14:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 110.28568 * 2 1 4 4 C 1.54265 * 110.32163 * 237.88128 * 2 1 3 5 5 C 1.54380 * 105.05553 * 240.99847 * 4 2 1 6 6 H 1.08998 * 110.41123 * 94.93008 * 5 4 2 7 7 C 1.50700 * 110.41024 * 217.36754 * 5 4 2 8 8 C 1.38671 * 120.42028 * 255.17512 * 7 5 4 9 9 C 1.38626 * 118.42319 * 180.02562 * 8 7 5 10 10 C 1.38233 * 119.16118 * 359.97438 * 9 8 7 11 11 N 1.31853 * 120.76171 * 0.02562 * 10 9 8 12 12 C 1.31890 * 121.72474 * 359.69841 * 11 10 9 13 13 N 1.48559 * 104.59614 * 336.14758 * 5 4 2 14 14 C 1.46900 * 110.99978 * 159.04245 * 13 5 4 15 15 C 1.50697 * 109.47470 * 169.99903 * 14 13 5 16 16 C 1.38643 * 119.74877 * 89.99704 * 15 14 13 17 17 C 1.37613 * 120.24721 * 180.02562 * 16 15 14 18 18 C 1.40709 * 119.74697 * 359.97102 * 17 16 15 19 19 C 1.41399 * 120.24578 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00010 * 335.72332 * 19 18 17 21 21 C 1.39946 * 119.99947 * 155.72470 * 19 18 17 22 22 N 1.30821 * 120.00035 * 342.29492 * 21 19 18 23 23 Si 1.86800 * 120.00069 * 162.30304 * 21 19 18 24 24 H 1.48496 * 109.47266 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.46900 * 299.99576 * 23 21 19 26 26 H 1.48504 * 109.47251 * 59.99432 * 23 21 19 27 27 C 1.40719 * 119.51207 * 0.28087 * 18 17 16 28 28 C 1.37617 * 119.73948 * 359.44473 * 27 18 17 29 29 C 1.48558 * 104.22045 * 39.48541 * 13 5 4 30 30 H 1.08998 * 109.47086 * 182.12232 * 1 2 3 31 31 H 1.08995 * 109.47225 * 302.12097 * 1 2 3 32 32 H 1.08997 * 109.47144 * 62.12453 * 1 2 3 33 33 H 1.08997 * 110.32621 * 122.10458 * 4 2 1 34 34 H 1.08999 * 110.40969 * 359.93503 * 4 2 1 35 35 H 1.08003 * 120.79023 * 0.02578 * 8 7 5 36 36 H 1.08000 * 120.42252 * 179.97438 * 9 8 7 37 37 H 1.07995 * 119.61896 * 180.02562 * 10 9 8 38 38 H 1.08006 * 119.61599 * 180.30944 * 12 11 10 39 39 H 1.09004 * 109.47413 * 49.99360 * 14 13 5 40 40 H 1.09008 * 109.46895 * 290.00054 * 14 13 5 41 41 H 1.07997 * 119.87202 * 0.02562 * 16 15 14 42 42 H 1.08009 * 120.12478 * 180.02562 * 17 16 15 43 43 H 0.97004 * 120.00360 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.12475 * 179.72303 * 27 18 17 45 45 H 1.08008 * 119.87000 * 180.27116 * 28 27 18 46 46 H 1.08996 * 110.41161 * 79.29957 * 29 13 5 47 47 H 1.09001 * 110.40776 * 201.73842 * 29 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0658 -0.7691 -1.2252 5 6 2.8829 -1.9399 -0.6379 6 1 2.2684 -2.8379 -0.5739 7 6 4.1080 -2.1986 -1.4765 8 6 4.1579 -3.2920 -2.3280 9 6 5.3054 -3.4908 -3.0799 10 6 6.3542 -2.5986 -2.9572 11 7 6.2716 -1.5695 -2.1370 12 6 5.1937 -1.3464 -1.4106 13 7 3.2721 -1.4806 0.7202 14 6 3.6121 -2.6193 1.5838 15 6 4.2321 -2.1139 2.8609 16 6 3.4246 -1.8246 3.9502 17 6 3.9799 -1.3620 5.1212 18 6 5.3727 -1.1834 5.2107 19 6 5.9545 -0.7091 6.4090 20 1 5.3659 -0.1247 7.1007 21 6 7.2931 -0.9969 6.6987 22 7 7.9050 -1.9662 6.0683 23 14 8.2060 0.0028 7.9858 24 1 9.5989 -0.4977 8.1050 25 1 8.2258 1.4313 7.5805 26 1 7.5186 -0.1307 9.2954 27 6 6.1819 -1.4751 4.0970 28 6 5.6055 -1.9420 2.9379 29 6 2.0684 -0.7708 1.2244 30 1 -0.3633 -1.0269 0.0381 31 1 -0.3633 0.5464 0.8703 32 1 -0.3633 0.4805 -0.9084 33 1 2.7067 -0.1243 -1.8265 34 1 1.2398 -1.1483 -1.8270 35 1 3.3226 -3.9724 -2.4036 36 1 5.3792 -4.3321 -3.7531 37 1 7.2514 -2.7462 -3.5398 38 1 5.1608 -0.4899 -0.7534 39 1 4.3202 -3.2679 1.0679 40 1 2.7076 -3.1815 1.8166 41 1 2.3559 -1.9630 3.8793 42 1 3.3490 -1.1377 5.9688 43 1 8.8329 -2.1655 6.2688 44 1 7.2516 -1.3373 4.1533 45 1 6.2251 -2.1707 2.0832 46 1 1.3265 -1.4858 1.5799 47 1 2.3414 -0.0776 2.0200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347173319.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:48 Heat of formation + Delta-G solvation = 35.759495 kcal Electronic energy + Delta-G solvation = -26636.866035 eV Core-core repulsion = 23168.757014 eV Total energy + Delta-G solvation = -3468.109020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.40966 -40.04822 -39.07805 -35.87954 -34.46566 -33.88518 -32.69214 -31.62334 -31.07315 -29.44581 -28.28976 -26.73320 -25.05134 -24.49562 -23.79003 -22.87265 -21.81472 -21.25458 -20.78381 -19.20372 -18.05051 -17.38147 -17.15294 -17.02066 -16.39969 -15.80368 -15.70113 -15.59144 -15.34360 -14.85431 -14.76434 -14.45671 -14.09658 -14.06036 -13.90354 -13.84827 -13.75078 -13.44216 -13.24407 -13.03668 -12.93099 -12.68750 -12.57008 -12.47388 -12.06163 -11.99344 -11.76935 -11.65293 -11.44971 -11.36197 -11.22211 -11.00142 -10.65604 -10.33968 -9.80281 -9.39615 -9.33394 -9.13629 -8.63040 -6.32325 0.24272 0.42093 0.96805 1.16569 1.36344 1.47742 1.52663 2.20097 2.67964 2.90237 3.17206 3.54218 3.73503 3.74751 3.82283 4.01174 4.06054 4.07751 4.18124 4.20937 4.29176 4.34243 4.45765 4.52004 4.56569 4.60829 4.68826 4.70568 4.76368 4.85451 4.90196 4.96424 5.04507 5.05455 5.07674 5.16002 5.23177 5.27254 5.34416 5.38227 5.38652 5.45649 5.48854 5.71625 5.84030 5.94077 6.05910 6.11495 6.17295 6.31304 6.40280 6.72273 6.95381 7.05811 7.13794 8.33852 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013104 B = 0.003404 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.310923 B = 8222.444848 C = 9711.481498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 H 0.071 0.929 4 C -0.101 4.101 5 C 0.105 3.895 6 H 0.072 0.928 7 C -0.124 4.124 8 C -0.077 4.077 9 C -0.168 4.168 10 C 0.076 3.924 11 N -0.523 5.523 12 C 0.109 3.891 13 N -0.511 5.511 14 C 0.122 3.878 15 C -0.189 4.189 16 C -0.078 4.078 17 C -0.241 4.241 18 C 0.081 3.919 19 C -0.505 4.505 20 H 0.075 0.925 21 C 0.035 3.965 22 N -0.828 5.828 23 Si 0.981 3.019 24 H -0.268 1.268 25 H -0.262 1.262 26 H -0.257 1.257 27 C -0.191 4.191 28 C -0.086 4.086 29 C 0.044 3.956 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.173 0.827 38 H 0.139 0.861 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.287 0.713 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.050 0.950 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.180 -2.147 -17.517 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 H 0.090 0.910 4 C -0.139 4.139 5 C -0.004 4.004 6 H 0.090 0.910 7 C -0.126 4.126 8 C -0.103 4.103 9 C -0.188 4.188 10 C -0.081 4.081 11 N -0.232 5.232 12 C -0.048 4.048 13 N -0.235 5.235 14 C -0.005 4.005 15 C -0.190 4.190 16 C -0.097 4.097 17 C -0.261 4.261 18 C 0.079 3.921 19 C -0.534 4.534 20 H 0.093 0.907 21 C -0.179 4.179 22 N -0.454 5.454 23 Si 0.801 3.199 24 H -0.192 1.192 25 H -0.186 1.186 26 H -0.182 1.182 27 C -0.210 4.210 28 C -0.105 4.105 29 C -0.084 4.084 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.190 0.810 38 H 0.157 0.843 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.132 0.868 42 H 0.114 0.886 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.068 0.932 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.780 -1.377 -17.466 20.065 hybrid contribution -0.313 -0.690 1.040 1.286 sum -10.093 -2.067 -16.426 19.390 Atomic orbital electron populations 1.21813 0.92944 1.02271 1.02443 1.21869 0.96676 0.99261 0.93387 0.91006 1.22403 0.99011 0.95340 0.97153 1.21507 0.91950 0.98417 0.88502 0.90975 1.20756 0.96945 0.96405 0.98504 1.21827 0.99012 0.95751 0.93704 1.22431 0.93820 1.01370 1.01146 1.23246 0.99677 0.90102 0.95087 1.67701 1.26622 1.21686 1.07179 1.22531 0.88426 0.98818 0.94988 1.65302 1.33838 1.23109 1.01251 1.20697 0.98025 0.91119 0.90666 1.19190 0.92599 1.11558 0.95673 1.20603 0.97961 0.98432 0.92665 1.21139 0.94830 1.11588 0.98546 1.17922 0.92122 0.89251 0.92833 1.19820 0.96923 1.31662 1.05014 0.90730 1.26753 0.98029 0.94259 0.98888 1.69886 1.12912 1.23839 1.38743 0.85283 0.77295 0.79096 0.78219 1.19203 1.18621 1.18150 1.21220 0.99118 1.07386 0.93314 1.20600 0.94787 0.99223 0.95843 1.23126 0.90369 0.97301 0.97616 0.92149 0.92569 0.91171 0.91751 0.88810 0.82342 0.81587 0.81019 0.84318 0.92309 0.93857 0.86825 0.88618 0.90284 0.88824 0.89420 0.93176 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.93 71.98 0.64 -1.44 16 2 C -0.09 -1.87 3.65 -9.90 -0.04 -1.91 16 3 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 4 C -0.10 -1.89 6.17 31.49 0.19 -1.70 16 5 C 0.10 2.35 2.47 44.32 0.11 2.46 16 6 H 0.07 1.42 7.91 -2.39 -0.02 1.40 16 7 C -0.12 -2.99 4.54 -19.77 -0.09 -3.08 16 8 C -0.08 -1.44 9.84 22.47 0.22 -1.22 16 9 C -0.17 -2.97 10.11 22.36 0.23 -2.74 16 10 C 0.08 1.71 11.18 84.69 0.95 2.66 16 11 N -0.52 -15.82 10.36 -195.84 -2.03 -17.84 16 12 C 0.11 3.26 10.33 84.67 0.87 4.13 16 13 N -0.51 -14.94 4.35 -865.57 -3.76 -18.71 16 14 C 0.12 4.08 4.92 85.56 0.42 4.50 16 15 C -0.19 -8.08 5.22 -19.68 -0.10 -8.19 16 16 C -0.08 -3.39 8.88 22.22 0.20 -3.20 16 17 C -0.24 -12.12 9.80 22.73 0.22 -11.90 16 18 C 0.08 4.55 5.57 -21.29 -0.12 4.44 16 19 C -0.50 -28.36 9.05 23.46 0.21 -28.14 16 20 H 0.07 4.03 7.91 -2.91 -0.02 4.00 16 21 C 0.04 1.85 5.14 85.26 0.44 2.29 16 22 N -0.83 -45.35 10.95 21.83 0.24 -45.11 16 23 Si 0.98 39.78 29.59 68.60 2.03 41.81 16 24 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 26 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 27 C -0.19 -10.64 8.70 22.73 0.20 -10.44 16 28 C -0.09 -4.21 9.67 22.22 0.21 -4.00 16 29 C 0.04 1.15 5.24 86.45 0.45 1.60 16 30 H 0.06 0.85 8.10 -2.39 -0.02 0.83 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 1.31 7.71 -2.39 -0.02 1.29 16 34 H 0.09 1.31 7.71 -2.39 -0.02 1.29 16 35 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 37 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.14 4.65 7.77 -2.91 -0.02 4.63 16 39 H 0.06 2.01 7.72 -2.38 -0.02 1.99 16 40 H 0.04 1.31 7.71 -2.38 -0.02 1.29 16 41 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 42 H 0.10 4.55 8.06 -2.91 -0.02 4.52 16 43 H 0.29 14.27 8.30 -92.71 -0.77 13.50 16 44 H 0.09 5.54 6.16 -2.91 -0.02 5.52 16 45 H 0.09 4.15 8.06 -2.91 -0.02 4.13 16 46 H 0.05 1.23 7.44 -2.39 -0.02 1.21 16 47 H 0.06 1.91 7.88 -2.39 -0.02 1.89 16 Total: -1.00 -65.56 381.08 2.64 -62.92 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.94 Total: 32.80 kcal Atomic # 6 Polarization: -61.09 SS G_CDS: 5.22 Total: -55.87 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -5.55 Total: -81.67 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -65.56 2.64 -62.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347173319.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.680 kcal (2) G-P(sol) polarization free energy of solvation -65.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds