Wall clock time and date at job start Tue Mar 31 2020 14:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.62676 * 2 1 4 4 C 1.55146 * 110.85211 * 236.79541 * 2 1 3 5 5 C 1.54901 * 101.65062 * 205.89034 * 4 2 1 6 6 H 1.09001 * 110.37884 * 278.24047 * 5 4 2 7 7 C 1.50703 * 110.37561 * 155.89927 * 5 4 2 8 8 C 1.38678 * 120.41624 * 104.34835 * 7 5 4 9 9 C 1.38629 * 118.42006 * 179.78995 * 8 7 5 10 10 C 1.38233 * 119.15656 * 0.51073 * 9 8 7 11 11 N 1.31851 * 120.76412 * 359.72763 * 10 9 8 12 12 C 1.31886 * 121.72853 * 359.97438 * 11 10 9 13 13 N 1.47849 * 104.79847 * 37.07360 * 5 4 2 14 14 C 1.46897 * 111.00117 * 213.63553 * 13 5 4 15 15 C 1.50695 * 109.47128 * 190.71452 * 14 13 5 16 16 C 1.38639 * 119.74937 * 269.72333 * 15 14 13 17 17 C 1.37623 * 120.24881 * 179.75917 * 16 15 14 18 18 C 1.40719 * 119.74333 * 0.53871 * 17 16 15 19 19 C 1.41395 * 120.24437 * 179.74169 * 18 17 16 20 20 H 1.07998 * 120.00009 * 204.36782 * 19 18 17 21 21 C 1.39945 * 119.99909 * 24.37072 * 19 18 17 22 22 N 1.30824 * 119.99968 * 17.87166 * 21 19 18 23 23 Si 1.86799 * 119.99810 * 197.88111 * 21 19 18 24 24 H 1.48505 * 109.47137 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47406 * 119.99796 * 23 21 19 26 26 H 1.48499 * 109.46940 * 239.99919 * 23 21 19 27 27 C 1.40724 * 119.51093 * 359.71931 * 18 17 16 28 28 C 1.37614 * 119.74565 * 359.97438 * 27 18 17 29 29 C 1.47443 * 108.56240 * 335.90127 * 13 5 4 30 30 H 1.09005 * 109.46886 * 298.33979 * 1 2 3 31 31 H 1.08998 * 109.47230 * 58.34833 * 1 2 3 32 32 H 1.09004 * 109.46964 * 178.34732 * 1 2 3 33 33 H 1.08993 * 110.99578 * 323.98233 * 4 2 1 34 34 H 1.08999 * 110.98999 * 87.76355 * 4 2 1 35 35 H 1.08001 * 120.78914 * 0.02562 * 8 7 5 36 36 H 1.08000 * 120.41831 * 180.21828 * 9 8 7 37 37 H 1.08005 * 119.61239 * 179.74948 * 10 9 8 38 38 H 1.07999 * 119.61583 * 180.02562 * 12 11 10 39 39 H 1.08999 * 109.47186 * 310.71822 * 14 13 5 40 40 H 1.09000 * 109.47564 * 70.71554 * 14 13 5 41 41 H 1.07997 * 119.87426 * 359.97438 * 16 15 14 42 42 H 1.07992 * 120.12894 * 180.27564 * 17 16 15 43 43 H 0.97000 * 119.99629 * 179.97438 * 22 21 19 44 44 H 1.07995 * 120.12319 * 179.97438 * 27 18 17 45 45 H 1.07992 * 119.87729 * 180.02562 * 28 27 18 46 46 H 1.09005 * 109.88567 * 120.39807 * 29 13 5 47 47 H 1.09004 * 109.88978 * 241.41866 * 29 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9140 1.0201 0.0000 4 6 2.0823 -0.7940 -1.2131 5 6 3.4691 -1.2423 -0.6884 6 1 4.1953 -0.4371 -0.7994 7 6 3.9341 -2.4744 -1.4211 8 6 4.9159 -2.3827 -2.3962 9 6 5.3157 -3.5430 -3.0411 10 6 4.7188 -4.7425 -2.7007 11 7 3.7844 -4.7912 -1.7718 12 6 3.3837 -3.7087 -1.1337 13 7 3.2515 -1.5457 0.7421 14 6 4.4412 -1.2139 1.5375 15 6 4.2872 -1.7726 2.9286 16 6 3.6997 -1.0005 3.9189 17 6 3.5495 -1.5023 5.1915 18 6 4.0052 -2.8001 5.4886 19 6 3.8612 -3.3242 6.7939 20 1 4.5216 -4.1066 7.1375 21 6 2.8629 -2.8290 7.6405 22 7 1.8579 -2.1555 7.1427 23 14 2.9657 -3.1296 9.4813 24 1 4.1903 -3.9118 9.7875 25 1 3.0185 -1.8275 10.1933 26 1 1.7696 -3.8889 9.9263 27 6 4.6049 -3.5727 4.4767 28 6 4.7390 -3.0528 3.2096 29 6 2.0757 -0.7885 1.2090 30 1 -0.3633 0.4879 0.9045 31 1 -0.3633 0.5393 -0.8748 32 1 -0.3633 -1.0273 -0.0296 33 1 1.4521 -1.6549 -1.4359 34 1 2.1841 -0.1507 -2.0871 35 1 5.3614 -1.4307 -2.6444 36 1 6.0803 -3.5093 -3.8031 37 1 5.0218 -5.6503 -3.2014 38 1 2.6159 -3.7880 -0.3783 39 1 5.3245 -1.6465 1.0678 40 1 4.5519 -0.1309 1.5912 41 1 3.3554 -0.0028 3.6899 42 1 3.0875 -0.9009 5.9603 43 1 1.1658 -1.8126 7.7295 44 1 4.9586 -4.5697 4.6939 45 1 5.1985 -3.6440 2.4315 46 1 1.3144 -1.4761 1.5776 47 1 2.3687 -0.1003 2.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347173322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:51 Heat of formation + Delta-G solvation = 36.272851 kcal Electronic energy + Delta-G solvation = -26652.685259 eV Core-core repulsion = 23184.598499 eV Total energy + Delta-G solvation = -3468.086760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.38238 -40.09952 -39.05611 -35.86590 -34.40272 -33.91320 -32.69350 -31.51720 -31.14540 -29.50611 -28.25871 -26.76048 -25.05664 -24.49220 -23.78670 -22.85233 -21.74395 -21.40664 -20.74081 -19.21843 -17.93105 -17.59688 -17.17792 -16.63207 -16.48921 -16.17812 -15.75583 -15.52067 -15.12461 -14.85085 -14.54226 -14.46269 -14.18868 -14.06302 -13.90793 -13.84723 -13.75416 -13.54624 -13.25440 -12.99898 -12.87874 -12.72793 -12.55114 -12.46054 -12.11308 -11.97951 -11.82517 -11.65279 -11.55221 -11.38072 -11.19424 -10.99674 -10.62007 -10.31178 -9.77166 -9.35211 -9.25088 -9.09204 -8.63210 -6.32315 0.27520 0.44856 0.95310 1.16650 1.36915 1.48810 1.52365 2.20691 2.66434 2.91691 3.18101 3.53808 3.72047 3.75703 3.82933 3.96213 4.06652 4.10360 4.17912 4.24378 4.29044 4.33764 4.48402 4.49729 4.56997 4.61152 4.67032 4.74340 4.74905 4.83249 4.87242 5.00709 5.04208 5.06286 5.09183 5.16887 5.19044 5.27560 5.28327 5.38016 5.41441 5.49107 5.49810 5.71525 5.88084 5.97518 6.09883 6.12129 6.27562 6.31426 6.41390 6.71619 6.95636 7.05399 7.16486 8.33781 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.015199 B = 0.003231 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.828841 B = 8663.566233 C = 9788.001868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 H 0.086 0.914 4 C -0.104 4.104 5 C 0.114 3.886 6 H 0.077 0.923 7 C -0.121 4.121 8 C -0.076 4.076 9 C -0.168 4.168 10 C 0.075 3.925 11 N -0.523 5.523 12 C 0.110 3.890 13 N -0.530 5.530 14 C 0.127 3.873 15 C -0.190 4.190 16 C -0.091 4.091 17 C -0.188 4.188 18 C 0.081 3.919 19 C -0.504 4.504 20 H 0.070 0.930 21 C 0.036 3.964 22 N -0.824 5.824 23 Si 0.981 3.019 24 H -0.260 1.260 25 H -0.262 1.262 26 H -0.266 1.266 27 C -0.246 4.246 28 C -0.073 4.073 29 C 0.051 3.949 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.173 0.827 38 H 0.137 0.863 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.287 0.713 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.051 0.949 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.824 6.043 -19.204 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.125 4.125 3 H 0.105 0.895 4 C -0.142 4.142 5 C 0.005 3.995 6 H 0.095 0.905 7 C -0.124 4.124 8 C -0.102 4.102 9 C -0.187 4.187 10 C -0.081 4.081 11 N -0.232 5.232 12 C -0.047 4.047 13 N -0.254 5.254 14 C 0.000 4.000 15 C -0.192 4.192 16 C -0.110 4.110 17 C -0.207 4.207 18 C 0.079 3.921 19 C -0.534 4.534 20 H 0.089 0.911 21 C -0.179 4.179 22 N -0.450 5.450 23 Si 0.802 3.198 24 H -0.184 1.184 25 H -0.187 1.187 26 H -0.191 1.191 27 C -0.266 4.266 28 C -0.092 4.092 29 C -0.076 4.076 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.190 0.810 38 H 0.154 0.846 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.118 0.882 46 H 0.070 0.930 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.136 4.815 -18.867 19.505 hybrid contribution 0.316 1.025 1.137 1.564 sum 1.452 5.841 -17.730 18.724 Atomic orbital electron populations 1.21695 0.93615 1.01862 1.02301 1.22368 0.96993 0.99193 0.93896 0.89520 1.22781 0.93709 0.99885 0.97837 1.21408 0.98025 0.92864 0.87172 0.90481 1.20774 0.97840 0.95979 0.97763 1.21813 0.94317 1.00383 0.93735 1.22425 1.01724 0.92756 1.01837 1.23242 0.91990 0.99367 0.93540 1.67695 1.14295 1.32761 1.08448 1.22478 0.98031 0.87993 0.96168 1.63386 1.03985 1.56481 1.01532 1.20741 0.92222 0.96924 0.90112 1.19242 1.09054 0.95845 0.95011 1.20730 0.98789 0.98284 0.93165 1.21234 1.06745 0.96100 0.96645 1.17928 0.89686 0.91555 0.92967 1.19840 1.15195 1.19868 0.98474 0.91138 1.26725 0.92908 0.92604 1.05619 1.69888 1.07682 1.28387 1.39079 0.85185 0.79358 0.79257 0.76047 1.18379 1.18661 1.19054 1.21126 1.11924 0.99266 0.94272 1.20525 0.98790 0.95002 0.94851 1.22821 0.92510 0.95216 0.97100 0.92806 0.90812 0.93210 0.91423 0.88410 0.82348 0.81610 0.81001 0.84584 0.91363 0.94165 0.87819 0.88257 0.90217 0.89352 0.88167 0.93044 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.14 71.98 0.66 -1.98 16 2 C -0.11 -2.20 3.53 -9.61 -0.03 -2.24 16 3 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 4 C -0.10 -2.00 5.92 31.98 0.19 -1.81 16 5 C 0.11 2.57 2.60 44.64 0.12 2.68 16 6 H 0.08 1.51 7.72 -2.39 -0.02 1.50 16 7 C -0.12 -2.87 5.04 -19.77 -0.10 -2.97 16 8 C -0.08 -1.38 9.84 22.47 0.22 -1.16 16 9 C -0.17 -2.82 10.11 22.36 0.23 -2.59 16 10 C 0.08 1.63 11.18 84.69 0.95 2.58 16 11 N -0.52 -15.35 10.36 -195.84 -2.03 -17.38 16 12 C 0.11 3.23 10.36 84.67 0.88 4.10 16 13 N -0.53 -15.89 4.12 -869.53 -3.58 -19.48 16 14 C 0.13 4.18 4.74 85.56 0.41 4.58 16 15 C -0.19 -8.09 5.13 -19.67 -0.10 -8.19 16 16 C -0.09 -4.19 8.70 22.22 0.19 -4.00 16 17 C -0.19 -10.08 8.70 22.73 0.20 -9.89 16 18 C 0.08 4.56 5.58 -21.29 -0.12 4.44 16 19 C -0.50 -28.41 9.05 23.46 0.21 -28.20 16 20 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 21 C 0.04 1.88 5.14 85.26 0.44 2.32 16 22 N -0.82 -44.20 10.95 21.83 0.24 -43.96 16 23 Si 0.98 39.40 29.59 68.60 2.03 41.43 16 24 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 25 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 26 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 27 C -0.25 -12.87 9.80 22.73 0.22 -12.65 16 28 C -0.07 -3.38 9.67 22.22 0.21 -3.17 16 29 C 0.05 1.51 5.86 86.64 0.51 2.02 16 30 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.45 7.83 -2.39 -0.02 1.43 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 36 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 38 H 0.14 4.53 7.76 -2.91 -0.02 4.51 16 39 H 0.07 2.16 8.01 -2.39 -0.02 2.14 16 40 H 0.04 1.22 7.90 -2.39 -0.02 1.20 16 41 H 0.10 4.25 6.92 -2.91 -0.02 4.22 16 42 H 0.10 5.58 6.15 -2.91 -0.02 5.56 16 43 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 44 H 0.09 4.48 8.06 -2.91 -0.02 4.46 16 45 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 46 H 0.05 1.77 7.82 -2.38 -0.02 1.75 16 47 H 0.05 1.55 5.49 -2.38 -0.01 1.54 16 Total: -1.00 -65.12 379.24 2.88 -62.25 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.95 Total: 33.26 kcal Atomic # 6 Polarization: -61.40 SS G_CDS: 5.27 Total: -56.12 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -5.37 Total: -80.82 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -65.12 2.88 -62.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347173322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.520 kcal (2) G-P(sol) polarization free energy of solvation -65.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds