Wall clock time and date at job start Tue Mar 31 2020 14:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.64334 * 2 1 4 4 C 1.54600 * 110.72343 * 123.14729 * 2 1 3 5 5 C 1.53995 * 105.13914 * 140.31399 * 4 2 1 6 6 H 1.09001 * 109.92233 * 241.67723 * 5 4 2 7 7 C 1.50705 * 109.91663 * 120.57741 * 5 4 2 8 8 C 1.38676 * 120.41609 * 101.17645 * 7 5 4 9 9 C 1.38625 * 118.41624 * 179.78380 * 8 7 5 10 10 C 1.38230 * 119.16556 * 0.51803 * 9 8 7 11 11 N 1.31855 * 120.75997 * 359.72008 * 10 9 8 12 12 C 1.31889 * 121.72619 * 0.02562 * 11 10 9 13 13 N 1.47903 * 107.05986 * 1.22971 * 5 4 2 14 14 C 1.46901 * 110.99948 * 214.15385 * 13 5 4 15 15 C 1.50707 * 109.46731 * 169.99548 * 14 13 5 16 16 C 1.38629 * 119.75022 * 269.72327 * 15 14 13 17 17 C 1.37622 * 120.25100 * 179.76913 * 16 15 14 18 18 C 1.40715 * 119.74004 * 0.48456 * 17 16 15 19 19 C 1.41393 * 120.24469 * 179.78886 * 18 17 16 20 20 H 1.08005 * 119.99827 * 150.20535 * 19 18 17 21 21 C 1.39946 * 120.00337 * 330.21237 * 19 18 17 22 22 N 1.30820 * 120.00533 * 161.72898 * 21 19 18 23 23 Si 1.86803 * 119.99419 * 341.73164 * 21 19 18 24 24 H 1.48500 * 109.47307 * 95.41196 * 23 21 19 25 25 H 1.48506 * 109.47001 * 215.41068 * 23 21 19 26 26 H 1.48501 * 109.47235 * 335.40961 * 23 21 19 27 27 C 1.40716 * 119.51489 * 359.77153 * 18 17 16 28 28 C 1.37623 * 119.74051 * 359.97438 * 27 18 17 29 29 C 1.48541 * 105.81568 * 334.66471 * 13 5 4 30 30 H 1.08995 * 109.47309 * 296.84871 * 1 2 3 31 31 H 1.08990 * 109.47249 * 56.85215 * 1 2 3 32 32 H 1.09008 * 109.47303 * 176.85258 * 1 2 3 33 33 H 1.09003 * 110.31043 * 21.40265 * 4 2 1 34 34 H 1.08995 * 110.31262 * 259.23098 * 4 2 1 35 35 H 1.07997 * 120.78859 * 0.02562 * 8 7 5 36 36 H 1.08002 * 120.41744 * 180.21425 * 9 8 7 37 37 H 1.07994 * 119.62178 * 179.70512 * 10 9 8 38 38 H 1.08001 * 119.61580 * 180.02562 * 12 11 10 39 39 H 1.08994 * 109.47142 * 289.99145 * 14 13 5 40 40 H 1.09001 * 109.46932 * 50.00135 * 14 13 5 41 41 H 1.08003 * 119.87522 * 0.02562 * 16 15 14 42 42 H 1.07994 * 120.12899 * 180.23423 * 17 16 15 43 43 H 0.96996 * 119.99866 * 180.02562 * 22 21 19 44 44 H 1.08001 * 120.13320 * 179.97438 * 27 18 17 45 45 H 1.08009 * 119.87295 * 180.02562 * 28 27 18 46 46 H 1.08998 * 110.66807 * 280.77245 * 29 13 5 47 47 H 1.09004 * 110.80718 * 157.71167 * 29 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0770 -0.7906 1.2107 5 6 3.2893 -1.5698 0.6676 6 1 3.1175 -2.6414 0.7686 7 6 4.5327 -1.1760 1.4226 8 6 5.0355 -1.9944 2.4229 9 6 6.1842 -1.5941 3.0876 10 6 6.7800 -0.3958 2.7413 11 7 6.2710 0.3596 1.7879 12 6 5.1827 0.0080 1.1311 13 7 3.4318 -1.2106 -0.7600 14 6 3.9212 -2.3525 -1.5438 15 6 3.8214 -2.0328 -3.0132 16 6 2.6660 -2.3519 -3.7097 17 6 2.5620 -2.0603 -5.0506 18 6 3.6380 -1.4452 -5.7168 19 6 3.5443 -1.1449 -7.0953 20 1 4.0833 -0.3020 -7.5022 21 6 2.7532 -1.9397 -7.9324 22 7 2.3730 -1.4849 -9.0986 23 14 2.2400 -3.6503 -7.3845 24 1 0.8891 -3.5891 -6.7709 25 1 2.2093 -4.5580 -8.5594 26 1 3.2137 -4.1637 -6.3877 27 6 4.8080 -1.1307 -5.0009 28 6 4.8878 -1.4268 -3.6593 29 6 2.0782 -0.7967 -1.2104 30 1 -0.3633 0.4641 0.9168 31 1 -0.3633 0.5619 -0.8603 32 1 -0.3634 -1.0262 -0.0564 33 1 1.3207 -1.4806 1.5850 34 1 2.3896 -0.1064 1.9994 35 1 4.5459 -2.9234 2.6753 36 1 6.6056 -2.2083 3.8697 37 1 7.6724 -0.0745 3.2576 38 1 4.7954 0.6527 0.3560 39 1 4.9611 -2.5517 -1.2852 40 1 3.3165 -3.2317 -1.3214 41 1 1.8428 -2.8273 -3.1971 42 1 1.6595 -2.3063 -5.5904 43 1 1.8243 -2.0357 -9.6786 44 1 5.6401 -0.6589 -5.5023 45 1 5.7846 -1.1860 -3.1077 46 1 1.4560 -1.6689 -1.4107 47 1 2.1416 -0.1602 -2.0931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347173324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:56 Heat of formation + Delta-G solvation = 50.896403 kcal Electronic energy + Delta-G solvation = -26703.294314 eV Core-core repulsion = 23235.841680 eV Total energy + Delta-G solvation = -3467.452635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.51995 -39.03266 -37.63665 -34.18065 -33.37447 -32.84381 -31.83378 -30.36217 -29.72009 -28.52138 -27.01122 -25.50810 -23.76944 -23.57116 -22.50204 -21.60012 -20.40036 -20.00092 -19.90216 -17.42506 -17.20485 -16.38926 -16.15964 -15.70592 -15.17759 -14.67904 -14.43508 -14.27896 -13.88426 -13.82766 -13.63871 -13.34934 -13.16213 -13.10894 -12.86114 -12.68876 -12.44305 -12.29555 -12.11094 -11.91036 -11.76538 -11.25582 -11.14540 -10.99312 -10.78876 -10.67930 -10.57846 -10.52083 -10.21233 -9.85789 -9.77076 -9.55503 -9.46211 -9.14244 -8.92485 -8.26003 -7.70852 -7.50891 -6.96426 -4.48917 1.09792 1.24066 2.52295 2.70817 3.08219 3.19517 3.29978 3.77083 3.96572 4.08165 4.38943 4.53920 4.60462 4.67683 4.76717 4.86762 4.93602 4.99287 5.05008 5.27970 5.39068 5.42721 5.49147 5.50765 5.60860 5.63052 5.71755 5.79212 5.81312 5.84482 5.91096 6.02021 6.07399 6.08392 6.11607 6.18740 6.26028 6.32281 6.37441 6.57248 6.70124 6.82693 6.90107 7.09148 7.17484 7.26357 7.43200 7.59062 7.82096 7.87888 8.00203 8.13648 8.35195 8.65922 8.79699 10.06182 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017233 B = 0.003241 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.433193 B = 8636.526514 C = 9406.898949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.082 0.918 4 C -0.116 4.116 5 C 0.104 3.896 6 H 0.059 0.941 7 C -0.115 4.115 8 C -0.078 4.078 9 C -0.178 4.178 10 C 0.088 3.912 11 N -0.488 5.488 12 C 0.132 3.868 13 N -0.504 5.504 14 C 0.114 3.886 15 C -0.215 4.215 16 C -0.067 4.067 17 C -0.239 4.239 18 C 0.097 3.903 19 C -0.448 4.448 20 H 0.090 0.910 21 C 0.084 3.916 22 N -0.809 5.809 23 Si 0.912 3.088 24 H -0.271 1.271 25 H -0.292 1.292 26 H -0.245 1.245 27 C -0.211 4.211 28 C -0.058 4.058 29 C 0.050 3.950 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.066 0.934 40 H 0.027 0.973 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.285 0.715 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.045 0.955 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 -1.776 21.375 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.100 0.900 4 C -0.154 4.154 5 C -0.005 4.005 6 H 0.077 0.923 7 C -0.117 4.117 8 C -0.105 4.105 9 C -0.198 4.198 10 C -0.069 4.069 11 N -0.197 5.197 12 C -0.025 4.025 13 N -0.228 5.228 14 C -0.013 4.013 15 C -0.217 4.217 16 C -0.086 4.086 17 C -0.258 4.258 18 C 0.093 3.907 19 C -0.477 4.477 20 H 0.108 0.892 21 C -0.134 4.134 22 N -0.433 5.433 23 Si 0.739 3.261 24 H -0.198 1.198 25 H -0.219 1.219 26 H -0.168 1.168 27 C -0.231 4.231 28 C -0.077 4.077 29 C -0.077 4.077 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.168 0.832 38 H 0.180 0.820 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.063 0.937 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.306 -0.568 20.809 20.819 hybrid contribution -1.236 -2.347 0.323 2.672 sum -0.929 -2.915 21.132 21.353 Atomic orbital electron populations 1.21759 0.94688 1.01796 1.01742 1.22125 0.95302 0.99893 0.94482 0.89957 1.22528 0.95847 0.98814 0.98208 1.21227 0.91457 0.98008 0.89844 0.92335 1.20797 0.97945 0.96196 0.96784 1.21450 0.95294 0.99046 0.94698 1.22039 0.97280 0.98606 1.01888 1.22738 0.98927 0.91169 0.94060 1.67784 1.11535 1.33563 1.06800 1.22742 0.89698 0.94194 0.95904 1.64787 1.23810 1.34491 0.99700 1.20879 0.99168 0.89744 0.91480 1.18836 0.96904 1.12828 0.93088 1.20430 0.95563 0.98367 0.94229 1.20978 0.99108 1.11335 0.94353 1.17732 0.90175 0.89196 0.93550 1.19525 1.23889 1.12652 0.91587 0.89205 1.26158 0.92212 1.00725 0.94351 1.69699 1.26425 1.37557 1.09634 0.86304 0.80287 0.81258 0.78254 1.19770 1.21931 1.16788 1.21019 0.97827 1.09915 0.94293 1.20457 0.96482 0.96686 0.94080 1.23225 0.88282 0.98496 0.97682 0.92764 0.92188 0.92793 0.91281 0.91211 0.85388 0.85213 0.83249 0.81985 0.91524 0.95503 0.89474 0.88410 0.90487 0.88297 0.88866 0.93686 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.16 37.16 0.34 -1.04 16 2 C -0.10 -1.10 3.66 -88.76 -0.32 -1.42 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.12 -1.18 6.13 -25.37 -0.16 -1.33 16 5 C 0.10 1.21 2.68 -67.79 -0.18 1.03 16 6 H 0.06 0.67 7.48 -51.93 -0.39 0.28 16 7 C -0.11 -1.35 4.75 -104.48 -0.50 -1.85 16 8 C -0.08 -0.79 9.83 -39.28 -0.39 -1.18 16 9 C -0.18 -1.67 10.11 -39.44 -0.40 -2.07 16 10 C 0.09 0.95 11.18 -17.54 -0.20 0.75 16 11 N -0.49 -6.60 10.36 -13.25 -0.14 -6.74 16 12 C 0.13 1.75 10.50 -17.55 -0.18 1.56 16 13 N -0.50 -7.14 4.28 -225.36 -0.96 -8.10 16 14 C 0.11 1.82 5.18 -4.97 -0.03 1.79 16 15 C -0.22 -4.19 4.61 -104.33 -0.48 -4.67 16 16 C -0.07 -1.39 8.31 -39.66 -0.33 -1.72 16 17 C -0.24 -5.62 7.18 -38.87 -0.28 -5.90 16 18 C 0.10 2.42 5.10 -106.83 -0.55 1.88 16 19 C -0.45 -12.10 9.57 -37.74 -0.36 -12.46 16 20 H 0.09 2.55 8.06 -52.48 -0.42 2.12 16 21 C 0.08 2.21 5.40 -17.34 -0.09 2.11 16 22 N -0.81 -21.58 13.93 55.55 0.77 -20.81 16 23 Si 0.91 20.80 24.52 -169.99 -4.17 16.63 16 24 H -0.27 -6.00 6.71 56.52 0.38 -5.62 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.24 -5.73 6.86 56.52 0.39 -5.34 16 27 C -0.21 -4.89 9.80 -38.87 -0.38 -5.27 16 28 C -0.06 -1.21 9.67 -39.66 -0.38 -1.59 16 29 C 0.05 0.70 4.41 -1.89 -0.01 0.69 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.51 8.10 -51.92 -0.42 0.09 16 33 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 34 H 0.07 0.69 7.68 -51.93 -0.40 0.30 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.16 2.25 7.71 -52.49 -0.40 1.84 16 39 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 40 H 0.03 0.41 7.75 -51.93 -0.40 0.01 16 41 H 0.09 1.61 7.39 -52.48 -0.39 1.22 16 42 H 0.10 2.33 4.73 -52.49 -0.25 2.08 16 43 H 0.28 6.87 8.30 -40.82 -0.34 6.54 16 44 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 45 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 46 H 0.04 0.64 6.96 -51.93 -0.36 0.28 16 47 H 0.09 1.48 7.74 -51.93 -0.40 1.08 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -27.73 373.56 -10.96 -38.69 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -7.22 Total: 5.38 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: -4.87 Total: -30.68 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.33 Total: -35.65 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.17 Total: 16.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.73 -10.96 -38.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347173324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.584 kcal (2) G-P(sol) polarization free energy of solvation -27.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds