Wall clock time and date at job start Tue Mar 31 2020 14:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.64334 * 2 1 4 4 C 1.54600 * 110.72343 * 123.14729 * 2 1 3 5 5 C 1.53995 * 105.13914 * 140.31399 * 4 2 1 6 6 H 1.09001 * 109.92233 * 241.67723 * 5 4 2 7 7 C 1.50705 * 109.91663 * 120.57741 * 5 4 2 8 8 C 1.38676 * 120.41609 * 101.17645 * 7 5 4 9 9 C 1.38625 * 118.41624 * 179.78380 * 8 7 5 10 10 C 1.38230 * 119.16556 * 0.51803 * 9 8 7 11 11 N 1.31855 * 120.75997 * 359.72008 * 10 9 8 12 12 C 1.31889 * 121.72619 * 0.02562 * 11 10 9 13 13 N 1.47903 * 107.05986 * 1.22971 * 5 4 2 14 14 C 1.46901 * 110.99948 * 214.15385 * 13 5 4 15 15 C 1.50707 * 109.46731 * 169.99548 * 14 13 5 16 16 C 1.38629 * 119.75022 * 269.72327 * 15 14 13 17 17 C 1.37622 * 120.25100 * 179.76913 * 16 15 14 18 18 C 1.40715 * 119.74004 * 0.48456 * 17 16 15 19 19 C 1.41393 * 120.24469 * 179.78886 * 18 17 16 20 20 H 1.08005 * 119.99827 * 150.20535 * 19 18 17 21 21 C 1.39946 * 120.00337 * 330.21237 * 19 18 17 22 22 N 1.30820 * 120.00533 * 161.72898 * 21 19 18 23 23 Si 1.86803 * 119.99419 * 341.73164 * 21 19 18 24 24 H 1.48500 * 109.47307 * 95.41196 * 23 21 19 25 25 H 1.48506 * 109.47001 * 215.41068 * 23 21 19 26 26 H 1.48501 * 109.47235 * 335.40961 * 23 21 19 27 27 C 1.40716 * 119.51489 * 359.77153 * 18 17 16 28 28 C 1.37623 * 119.74051 * 359.97438 * 27 18 17 29 29 C 1.48541 * 105.81568 * 334.66471 * 13 5 4 30 30 H 1.08995 * 109.47309 * 296.84871 * 1 2 3 31 31 H 1.08990 * 109.47249 * 56.85215 * 1 2 3 32 32 H 1.09008 * 109.47303 * 176.85258 * 1 2 3 33 33 H 1.09003 * 110.31043 * 21.40265 * 4 2 1 34 34 H 1.08995 * 110.31262 * 259.23098 * 4 2 1 35 35 H 1.07997 * 120.78859 * 0.02562 * 8 7 5 36 36 H 1.08002 * 120.41744 * 180.21425 * 9 8 7 37 37 H 1.07994 * 119.62178 * 179.70512 * 10 9 8 38 38 H 1.08001 * 119.61580 * 180.02562 * 12 11 10 39 39 H 1.08994 * 109.47142 * 289.99145 * 14 13 5 40 40 H 1.09001 * 109.46932 * 50.00135 * 14 13 5 41 41 H 1.08003 * 119.87522 * 0.02562 * 16 15 14 42 42 H 1.07994 * 120.12899 * 180.23423 * 17 16 15 43 43 H 0.96996 * 119.99866 * 180.02562 * 22 21 19 44 44 H 1.08001 * 120.13320 * 179.97438 * 27 18 17 45 45 H 1.08009 * 119.87295 * 180.02562 * 28 27 18 46 46 H 1.08998 * 110.66807 * 280.77245 * 29 13 5 47 47 H 1.09004 * 110.80718 * 157.71167 * 29 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0770 -0.7906 1.2107 5 6 3.2893 -1.5698 0.6676 6 1 3.1175 -2.6414 0.7686 7 6 4.5327 -1.1760 1.4226 8 6 5.0355 -1.9944 2.4229 9 6 6.1842 -1.5941 3.0876 10 6 6.7800 -0.3958 2.7413 11 7 6.2710 0.3596 1.7879 12 6 5.1827 0.0080 1.1311 13 7 3.4318 -1.2106 -0.7600 14 6 3.9212 -2.3525 -1.5438 15 6 3.8214 -2.0328 -3.0132 16 6 2.6660 -2.3519 -3.7097 17 6 2.5620 -2.0603 -5.0506 18 6 3.6380 -1.4452 -5.7168 19 6 3.5443 -1.1449 -7.0953 20 1 4.0833 -0.3020 -7.5022 21 6 2.7532 -1.9397 -7.9324 22 7 2.3730 -1.4849 -9.0986 23 14 2.2400 -3.6503 -7.3845 24 1 0.8891 -3.5891 -6.7709 25 1 2.2093 -4.5580 -8.5594 26 1 3.2137 -4.1637 -6.3877 27 6 4.8080 -1.1307 -5.0009 28 6 4.8878 -1.4268 -3.6593 29 6 2.0782 -0.7967 -1.2104 30 1 -0.3633 0.4641 0.9168 31 1 -0.3633 0.5619 -0.8603 32 1 -0.3634 -1.0262 -0.0564 33 1 1.3207 -1.4806 1.5850 34 1 2.3896 -0.1064 1.9994 35 1 4.5459 -2.9234 2.6753 36 1 6.6056 -2.2083 3.8697 37 1 7.6724 -0.0745 3.2576 38 1 4.7954 0.6527 0.3560 39 1 4.9611 -2.5517 -1.2852 40 1 3.3165 -3.2317 -1.3214 41 1 1.8428 -2.8273 -3.1971 42 1 1.6595 -2.3063 -5.5904 43 1 1.8243 -2.0357 -9.6786 44 1 5.6401 -0.6589 -5.5023 45 1 5.7846 -1.1860 -3.1077 46 1 1.4560 -1.6689 -1.4107 47 1 2.1416 -0.1602 -2.0931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347173324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:54 Heat of formation + Delta-G solvation = 36.581779 kcal Electronic energy + Delta-G solvation = -26703.915043 eV Core-core repulsion = 23235.841680 eV Total energy + Delta-G solvation = -3468.073363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.42725 -40.20562 -39.17274 -35.84490 -34.54799 -34.00705 -32.74073 -31.85148 -31.48364 -29.50310 -28.33141 -26.75279 -24.94152 -24.45753 -23.77238 -23.23387 -21.77494 -21.27955 -20.90309 -19.35970 -18.02875 -17.52705 -17.20893 -17.08635 -16.45933 -15.95900 -15.68613 -15.61447 -15.45278 -14.96240 -14.75092 -14.64081 -14.25876 -14.18934 -13.97550 -13.86551 -13.82568 -13.72834 -13.47279 -13.01116 -12.90511 -12.64858 -12.62057 -12.37812 -12.29736 -11.93531 -11.85019 -11.59098 -11.54785 -11.44524 -11.36491 -10.98737 -10.62756 -10.31991 -9.76885 -9.51254 -9.44890 -9.20719 -8.90683 -6.49811 0.27893 0.44617 0.75015 0.89088 1.24124 1.38894 1.47597 2.11115 2.53498 2.91805 3.13382 3.52208 3.58814 3.73871 3.76757 3.98396 4.05142 4.08848 4.19734 4.21072 4.23745 4.26023 4.39706 4.46271 4.49848 4.59011 4.70159 4.70469 4.72808 4.80778 4.86652 4.90826 4.97630 5.02491 5.03721 5.05406 5.09542 5.23689 5.30169 5.32680 5.34176 5.42078 5.44821 5.61925 5.72723 5.88242 5.90916 6.00341 6.10677 6.19714 6.26712 6.41961 6.75083 6.83582 7.16336 8.18446 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017233 B = 0.003241 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.433193 B = 8636.526514 C = 9406.898949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.072 0.928 4 C -0.107 4.107 5 C 0.108 3.892 6 H 0.073 0.927 7 C -0.121 4.121 8 C -0.078 4.078 9 C -0.169 4.169 10 C 0.075 3.925 11 N -0.521 5.521 12 C 0.110 3.890 13 N -0.515 5.515 14 C 0.119 3.881 15 C -0.188 4.188 16 C -0.067 4.067 17 C -0.247 4.247 18 C 0.076 3.924 19 C -0.489 4.489 20 H 0.052 0.948 21 C 0.047 3.953 22 N -0.853 5.853 23 Si 0.968 3.032 24 H -0.257 1.257 25 H -0.278 1.278 26 H -0.254 1.254 27 C -0.225 4.225 28 C -0.061 4.061 29 C 0.050 3.950 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.172 0.828 38 H 0.143 0.857 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.293 0.707 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.047 0.953 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 -4.383 25.951 26.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 H 0.091 0.909 4 C -0.145 4.145 5 C -0.001 4.001 6 H 0.091 0.909 7 C -0.124 4.124 8 C -0.104 4.104 9 C -0.188 4.188 10 C -0.081 4.081 11 N -0.231 5.231 12 C -0.046 4.046 13 N -0.239 5.239 14 C -0.008 4.008 15 C -0.189 4.189 16 C -0.086 4.086 17 C -0.266 4.266 18 C 0.073 3.927 19 C -0.519 4.519 20 H 0.070 0.930 21 C -0.167 4.167 22 N -0.480 5.480 23 Si 0.791 3.209 24 H -0.182 1.182 25 H -0.205 1.205 26 H -0.177 1.177 27 C -0.244 4.244 28 C -0.080 4.080 29 C -0.078 4.078 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.173 0.827 36 H 0.182 0.818 37 H 0.189 0.811 38 H 0.161 0.839 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.137 0.863 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.113 0.887 45 H 0.132 0.868 46 H 0.066 0.934 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.341 -3.160 25.391 25.589 hybrid contribution -0.890 -1.453 -0.791 1.878 sum -1.231 -4.613 24.601 25.060 Atomic orbital electron populations 1.21735 0.93373 1.02248 1.02257 1.22056 0.96297 0.99158 0.93743 0.90905 1.22492 0.95602 0.98885 0.97509 1.21267 0.92085 0.98940 0.87780 0.90884 1.20803 0.98007 0.95966 0.97582 1.21801 0.95337 0.99554 0.93749 1.22410 0.96558 0.98016 1.01841 1.23222 0.99683 0.91687 0.93522 1.67716 1.12150 1.35062 1.08125 1.22548 0.90579 0.95055 0.96439 1.64672 1.24134 1.33821 1.01260 1.20822 1.00126 0.91006 0.88875 1.19329 0.95398 1.08911 0.95246 1.20740 0.96850 0.97846 0.93126 1.21081 0.98471 1.11381 0.95674 1.17839 0.91449 0.90404 0.92982 1.19489 1.26007 1.13237 0.93187 0.93018 1.26831 0.92037 1.03598 0.94233 1.69729 1.28243 1.39100 1.10884 0.85459 0.80160 0.77193 0.78078 1.18176 1.20494 1.17739 1.21175 0.97466 1.10236 0.95552 1.20725 0.97873 0.96236 0.93174 1.23156 0.88453 0.98384 0.97765 0.91160 0.93000 0.92166 0.89277 0.90936 0.82654 0.81850 0.81071 0.83929 0.91080 0.93673 0.86334 0.88707 0.89646 0.88701 0.86822 0.93431 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.16 71.98 0.66 -1.67 16 2 C -0.09 -1.88 3.66 -9.59 -0.04 -1.91 16 3 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.11 -1.80 6.13 31.48 0.19 -1.61 16 5 C 0.11 2.14 2.68 44.31 0.12 2.26 16 6 H 0.07 1.28 7.48 -2.39 -0.02 1.26 16 7 C -0.12 -2.50 4.75 -19.77 -0.09 -2.59 16 8 C -0.08 -1.24 9.83 22.47 0.22 -1.02 16 9 C -0.17 -2.47 10.11 22.36 0.23 -2.25 16 10 C 0.08 1.43 11.18 84.69 0.95 2.38 16 11 N -0.52 -13.52 10.36 -195.84 -2.03 -15.55 16 12 C 0.11 2.81 10.50 84.67 0.89 3.70 16 13 N -0.52 -13.32 4.28 -866.91 -3.71 -17.03 16 14 C 0.12 3.38 5.18 85.56 0.44 3.83 16 15 C -0.19 -6.90 4.61 -19.68 -0.09 -6.99 16 16 C -0.07 -2.63 8.31 22.22 0.18 -2.45 16 17 C -0.25 -11.58 7.18 22.73 0.16 -11.42 16 18 C 0.08 3.94 5.10 -21.29 -0.11 3.83 16 19 C -0.49 -28.24 9.57 23.46 0.22 -28.02 16 20 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 21 C 0.05 2.57 5.40 85.26 0.46 3.03 16 22 N -0.85 -47.81 13.93 21.83 0.30 -47.51 16 23 Si 0.97 43.35 24.52 68.60 1.68 45.04 16 24 H -0.26 -10.75 6.71 99.48 0.67 -10.08 16 25 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 26 H -0.25 -11.58 6.86 99.48 0.68 -10.90 16 27 C -0.22 -10.71 9.80 22.73 0.22 -10.49 16 28 C -0.06 -2.50 9.67 22.22 0.21 -2.29 16 29 C 0.05 1.29 4.41 86.65 0.38 1.68 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.95 8.10 -2.38 -0.02 0.93 16 33 H 0.09 1.19 7.85 -2.39 -0.02 1.17 16 34 H 0.07 1.22 7.68 -2.39 -0.02 1.20 16 35 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 37 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.14 4.02 7.71 -2.91 -0.02 4.00 16 39 H 0.07 2.01 8.08 -2.39 -0.02 1.99 16 40 H 0.05 1.16 7.75 -2.39 -0.02 1.14 16 41 H 0.12 3.93 7.39 -2.91 -0.02 3.91 16 42 H 0.10 4.47 4.73 -2.91 -0.01 4.46 16 43 H 0.29 14.71 8.30 -92.71 -0.77 13.94 16 44 H 0.09 4.47 8.06 -2.91 -0.02 4.44 16 45 H 0.11 4.16 8.06 -2.91 -0.02 4.13 16 46 H 0.05 1.21 6.96 -2.39 -0.02 1.19 16 47 H 0.06 1.87 7.74 -2.38 -0.02 1.85 16 Total: -1.00 -64.02 373.56 2.35 -61.66 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.88 Total: 25.39 kcal Atomic # 6 Polarization: -57.22 SS G_CDS: 5.22 Total: -52.00 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -5.43 Total: -80.08 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.68 Total: 45.04 kcal Total: -64.02 2.35 -61.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347173324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.244 kcal (2) G-P(sol) polarization free energy of solvation -64.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds