Wall clock time and date at job start Tue Mar 31 2020 14:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.90188 * 2 1 4 4 C 1.55138 * 110.99037 * 123.86629 * 2 1 3 5 5 C 1.54323 * 103.17781 * 153.83286 * 4 2 1 6 6 H 1.09002 * 109.88584 * 97.03169 * 5 4 2 7 7 C 1.50695 * 109.88988 * 218.22271 * 5 4 2 8 8 C 1.38682 * 120.42070 * 49.88952 * 7 5 4 9 9 C 1.38622 * 118.42121 * 179.78239 * 8 7 5 10 10 C 1.38231 * 119.16106 * 0.47355 * 9 8 7 11 11 N 1.31854 * 120.76234 * 359.76838 * 10 9 8 12 12 C 1.31881 * 121.72656 * 0.02562 * 11 10 9 13 13 N 1.47443 * 107.23007 * 337.62617 * 5 4 2 14 14 C 1.46899 * 110.99877 * 236.74010 * 13 5 4 15 15 C 1.50702 * 109.46980 * 181.22892 * 14 13 5 16 16 C 1.38639 * 119.75127 * 269.73029 * 15 14 13 17 17 C 1.37611 * 120.24740 * 179.72266 * 16 15 14 18 18 C 1.40722 * 119.74663 * 0.52407 * 17 16 15 19 19 C 1.41399 * 120.24263 * 179.72853 * 18 17 16 20 20 H 1.08003 * 119.99596 * 202.24356 * 19 18 17 21 21 C 1.39946 * 120.00212 * 22.24136 * 19 18 17 22 22 N 1.30820 * 119.99881 * 18.73874 * 21 19 18 23 23 Si 1.86800 * 119.99960 * 198.74491 * 21 19 18 24 24 H 1.48498 * 109.47257 * 89.99582 * 23 21 19 25 25 H 1.48496 * 109.47203 * 210.00093 * 23 21 19 26 26 H 1.48504 * 109.46881 * 329.99591 * 23 21 19 27 27 C 1.40711 * 119.50729 * 359.74814 * 18 17 16 28 28 C 1.37608 * 119.74845 * 0.02562 * 27 18 17 29 29 C 1.47847 * 108.56922 * 359.01151 * 13 5 4 30 30 H 1.08994 * 109.47085 * 296.12889 * 1 2 3 31 31 H 1.08994 * 109.47138 * 56.13526 * 1 2 3 32 32 H 1.09003 * 109.46857 * 176.13659 * 1 2 3 33 33 H 1.09005 * 110.70788 * 35.36510 * 4 2 1 34 34 H 1.08996 * 110.70653 * 272.30268 * 4 2 1 35 35 H 1.08003 * 120.78447 * 0.02562 * 8 7 5 36 36 H 1.07996 * 120.42043 * 180.22177 * 9 8 7 37 37 H 1.08002 * 119.61575 * 179.74867 * 10 9 8 38 38 H 1.08004 * 119.61749 * 179.97438 * 12 11 10 39 39 H 1.08993 * 109.47020 * 301.22767 * 14 13 5 40 40 H 1.08998 * 109.46829 * 61.23529 * 14 13 5 41 41 H 1.08000 * 119.87000 * 359.97438 * 16 15 14 42 42 H 1.08007 * 120.12830 * 180.27943 * 17 16 15 43 43 H 0.97002 * 120.00043 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.12313 * 180.02562 * 27 18 17 45 45 H 1.08007 * 119.87600 * 179.97438 * 28 27 18 46 46 H 1.09000 * 110.37394 * 142.92213 * 29 13 5 47 47 H 1.08996 * 110.37213 * 265.15251 * 29 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9189 1.0183 0.0000 4 6 2.0858 -0.8071 1.2027 5 6 3.4709 -1.2712 0.7051 6 1 4.2423 -0.5932 1.0702 7 6 3.7457 -2.6724 1.1867 8 6 2.8040 -3.6744 1.0060 9 6 3.1018 -4.9495 1.4610 10 6 4.3147 -5.1761 2.0842 11 7 5.1843 -4.1979 2.2433 12 6 4.9365 -2.9738 1.8195 13 7 3.4367 -1.2450 -0.7688 14 6 3.7690 -2.5628 -1.3265 15 6 3.7536 -2.4896 -2.8316 16 6 2.5805 -2.7550 -3.5213 17 6 2.5535 -2.6856 -4.8954 18 6 3.7251 -2.3544 -5.6010 19 6 3.7105 -2.2857 -7.0133 20 1 4.6309 -2.3911 -7.5685 21 6 2.5036 -2.0812 -7.6915 22 7 1.4695 -1.5954 -7.0544 23 14 2.3693 -2.5021 -9.5065 24 1 1.9277 -3.9120 -9.6564 25 1 1.3797 -1.6022 -10.1514 26 1 3.6939 -2.3267 -10.1546 27 6 4.9112 -2.0926 -4.8908 28 6 4.9139 -2.1633 -3.5165 29 6 2.0912 -0.8107 -1.2009 30 1 -0.3633 0.4526 0.9226 31 1 -0.3633 0.5726 -0.8533 32 1 -0.3633 -1.0254 -0.0692 33 1 1.4475 -1.6637 1.4200 34 1 2.1856 -0.1699 2.0813 35 1 1.8627 -3.4670 0.5187 36 1 2.3935 -5.7547 1.3339 37 1 4.5525 -6.1658 2.4452 38 1 5.6731 -2.1981 1.9681 39 1 4.7610 -2.8612 -0.9874 40 1 3.0347 -3.2950 -0.9908 41 1 1.6837 -3.0133 -2.9778 42 1 1.6374 -2.8884 -5.4305 43 1 0.6328 -1.4540 -7.5244 44 1 5.8160 -1.8371 -5.4222 45 1 5.8234 -1.9632 -2.9693 46 1 2.1626 -0.1776 -2.0853 47 1 1.4604 -1.6759 -1.4044 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347173326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:59 Heat of formation + Delta-G solvation = 57.456816 kcal Electronic energy + Delta-G solvation = -27036.552891 eV Core-core repulsion = 23569.384737 eV Total energy + Delta-G solvation = -3467.168154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.88483 -38.80462 -37.35918 -34.20126 -33.46561 -32.32423 -31.87284 -30.01997 -29.26119 -28.55029 -26.73530 -25.56813 -24.12066 -23.30531 -22.70866 -21.08001 -20.23143 -20.11069 -19.48703 -17.30122 -17.18962 -16.62416 -15.70808 -15.66735 -15.30610 -14.66375 -14.39480 -14.13329 -14.00438 -13.54686 -13.53723 -13.27981 -13.16196 -12.95199 -12.64018 -12.45876 -12.24157 -12.04506 -11.94539 -11.69443 -11.42931 -11.27880 -11.07939 -10.99291 -10.91947 -10.64579 -10.49116 -10.46727 -10.29536 -9.69518 -9.54327 -9.49008 -9.35008 -9.13383 -9.00056 -7.93414 -7.43553 -7.28335 -6.77318 -4.34422 1.05297 1.23088 2.73655 3.05504 3.09452 3.10213 3.18274 3.73244 3.91751 4.31795 4.37892 4.58126 4.61804 4.67410 4.76094 4.84331 4.89649 5.01903 5.14985 5.30570 5.43432 5.52626 5.60878 5.67658 5.71060 5.72991 5.78656 5.84179 5.90545 5.93251 5.98977 6.04459 6.10328 6.24352 6.30153 6.39136 6.40591 6.44224 6.50014 6.64189 6.95124 7.06731 7.24459 7.36300 7.39286 7.44755 7.62379 7.90634 7.93092 8.06243 8.15854 8.31102 8.64631 8.90149 8.98921 10.16019 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.015660 B = 0.003372 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.559545 B = 8302.416073 C = 9245.729467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.083 0.917 4 C -0.130 4.130 5 C 0.110 3.890 6 H 0.092 0.908 7 C -0.138 4.138 8 C -0.062 4.062 9 C -0.174 4.174 10 C 0.092 3.908 11 N -0.486 5.486 12 C 0.106 3.894 13 N -0.508 5.508 14 C 0.113 3.887 15 C -0.212 4.212 16 C -0.092 4.092 17 C -0.168 4.168 18 C 0.112 3.888 19 C -0.462 4.462 20 H 0.077 0.923 21 C 0.077 3.923 22 N -0.791 5.791 23 Si 0.907 3.093 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.262 1.262 27 C -0.229 4.229 28 C -0.069 4.069 29 C 0.055 3.945 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.061 0.939 40 H 0.033 0.967 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.280 0.720 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.481 -1.011 15.440 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.101 0.899 4 C -0.168 4.168 5 C 0.001 3.999 6 H 0.110 0.890 7 C -0.141 4.141 8 C -0.088 4.088 9 C -0.194 4.194 10 C -0.065 4.065 11 N -0.194 5.194 12 C -0.051 4.051 13 N -0.231 5.231 14 C -0.013 4.013 15 C -0.213 4.213 16 C -0.111 4.111 17 C -0.188 4.188 18 C 0.109 3.891 19 C -0.491 4.491 20 H 0.095 0.905 21 C -0.141 4.141 22 N -0.416 5.416 23 Si 0.731 3.269 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.186 1.186 27 C -0.249 4.249 28 C -0.088 4.088 29 C -0.073 4.073 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.098 0.902 42 H 0.136 0.864 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.538 -0.746 15.620 15.714 hybrid contribution -1.553 -0.572 -1.101 1.988 sum -3.091 -1.318 14.519 14.903 Atomic orbital electron populations 1.21689 0.94578 1.01841 1.01672 1.22419 0.95463 0.99742 0.94730 0.89902 1.22984 0.95460 0.99994 0.98394 1.21475 0.97822 0.91001 0.89580 0.89019 1.21235 0.95764 0.97710 0.99412 1.21410 0.99082 0.92743 0.95612 1.22088 0.99077 0.97656 1.00530 1.22701 0.89965 0.98186 0.95649 1.67672 1.32874 1.00628 1.18270 1.22643 0.94859 0.93744 0.93902 1.64154 1.27314 1.27917 1.03687 1.21162 0.98885 0.88013 0.93231 1.18872 0.94831 1.15636 0.92008 1.20482 0.94987 1.00998 0.94668 1.21314 0.99701 1.05414 0.92357 1.17613 0.90988 0.87345 0.93154 1.19627 0.94129 1.43565 0.91776 0.90499 1.25906 0.95227 0.92184 1.00796 1.69834 1.02803 1.30403 1.38556 0.86338 0.79156 0.79292 0.82105 1.19295 1.20327 1.18598 1.20945 0.98503 1.12214 0.93224 1.20316 0.95784 0.98704 0.93946 1.23164 0.88298 0.98303 0.97492 0.92765 0.92164 0.92825 0.91334 0.90974 0.85267 0.84951 0.83034 0.82901 0.92030 0.94905 0.90226 0.86365 0.90947 0.89200 0.89639 0.89744 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.32 37.16 0.35 -1.12 16 2 C -0.10 -1.24 3.65 -88.22 -0.32 -1.56 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -1.41 5.80 -24.91 -0.14 -1.55 16 5 C 0.11 1.38 3.66 -67.88 -0.25 1.13 16 6 H 0.09 1.09 7.95 -51.93 -0.41 0.68 16 7 C -0.14 -1.73 3.20 -104.48 -0.33 -2.06 16 8 C -0.06 -0.75 6.34 -39.28 -0.25 -1.00 16 9 C -0.17 -1.91 10.11 -39.44 -0.40 -2.31 16 10 C 0.09 1.06 11.18 -17.54 -0.20 0.86 16 11 N -0.49 -6.46 10.36 -13.25 -0.14 -6.60 16 12 C 0.11 1.33 10.78 -17.55 -0.19 1.14 16 13 N -0.51 -8.05 5.22 -225.84 -1.18 -9.23 16 14 C 0.11 2.00 3.78 -4.98 -0.02 1.98 16 15 C -0.21 -4.56 4.93 -104.33 -0.51 -5.07 16 16 C -0.09 -2.10 8.57 -39.66 -0.34 -2.44 16 17 C -0.17 -4.33 8.72 -38.87 -0.34 -4.67 16 18 C 0.11 2.98 5.60 -106.82 -0.60 2.38 16 19 C -0.46 -12.28 9.06 -37.74 -0.34 -12.62 16 20 H 0.08 1.98 7.91 -52.48 -0.42 1.57 16 21 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 22 N -0.79 -20.22 10.86 55.55 0.60 -19.62 16 23 Si 0.91 18.60 29.60 -169.99 -5.03 13.57 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 26 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 27 C -0.23 -5.71 9.80 -38.88 -0.38 -6.09 16 28 C -0.07 -1.57 9.67 -39.66 -0.38 -1.95 16 29 C 0.05 0.85 4.91 -2.04 -0.01 0.84 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.07 0.73 6.32 -51.93 -0.33 0.40 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.13 1.53 6.90 -52.48 -0.36 1.17 16 36 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.15 1.65 7.99 -52.48 -0.42 1.23 16 39 H 0.06 1.12 7.36 -51.93 -0.38 0.74 16 40 H 0.03 0.56 4.79 -51.93 -0.25 0.31 16 41 H 0.08 1.65 7.16 -52.49 -0.38 1.28 16 42 H 0.12 3.15 6.03 -52.48 -0.32 2.83 16 43 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 44 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 45 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 46 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 47 H 0.05 0.76 6.30 -51.93 -0.33 0.43 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -28.01 369.61 -11.87 -39.88 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.95 Total: 8.70 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: -4.75 Total: -32.28 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.71 Total: -35.44 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.01 -11.87 -39.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347173326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.342 kcal (2) G-P(sol) polarization free energy of solvation -28.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds