Wall clock time and date at job start Tue Mar 31 2020 14:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.90188 * 2 1 4 4 C 1.55138 * 110.99037 * 123.86629 * 2 1 3 5 5 C 1.54323 * 103.17781 * 153.83286 * 4 2 1 6 6 H 1.09002 * 109.88584 * 97.03169 * 5 4 2 7 7 C 1.50695 * 109.88988 * 218.22271 * 5 4 2 8 8 C 1.38682 * 120.42070 * 49.88952 * 7 5 4 9 9 C 1.38622 * 118.42121 * 179.78239 * 8 7 5 10 10 C 1.38231 * 119.16106 * 0.47355 * 9 8 7 11 11 N 1.31854 * 120.76234 * 359.76838 * 10 9 8 12 12 C 1.31881 * 121.72656 * 0.02562 * 11 10 9 13 13 N 1.47443 * 107.23007 * 337.62617 * 5 4 2 14 14 C 1.46899 * 110.99877 * 236.74010 * 13 5 4 15 15 C 1.50702 * 109.46980 * 181.22892 * 14 13 5 16 16 C 1.38639 * 119.75127 * 269.73029 * 15 14 13 17 17 C 1.37611 * 120.24740 * 179.72266 * 16 15 14 18 18 C 1.40722 * 119.74663 * 0.52407 * 17 16 15 19 19 C 1.41399 * 120.24263 * 179.72853 * 18 17 16 20 20 H 1.08003 * 119.99596 * 202.24356 * 19 18 17 21 21 C 1.39946 * 120.00212 * 22.24136 * 19 18 17 22 22 N 1.30820 * 119.99881 * 18.73874 * 21 19 18 23 23 Si 1.86800 * 119.99960 * 198.74491 * 21 19 18 24 24 H 1.48498 * 109.47257 * 89.99582 * 23 21 19 25 25 H 1.48496 * 109.47203 * 210.00093 * 23 21 19 26 26 H 1.48504 * 109.46881 * 329.99591 * 23 21 19 27 27 C 1.40711 * 119.50729 * 359.74814 * 18 17 16 28 28 C 1.37608 * 119.74845 * 0.02562 * 27 18 17 29 29 C 1.47847 * 108.56922 * 359.01151 * 13 5 4 30 30 H 1.08994 * 109.47085 * 296.12889 * 1 2 3 31 31 H 1.08994 * 109.47138 * 56.13526 * 1 2 3 32 32 H 1.09003 * 109.46857 * 176.13659 * 1 2 3 33 33 H 1.09005 * 110.70788 * 35.36510 * 4 2 1 34 34 H 1.08996 * 110.70653 * 272.30268 * 4 2 1 35 35 H 1.08003 * 120.78447 * 0.02562 * 8 7 5 36 36 H 1.07996 * 120.42043 * 180.22177 * 9 8 7 37 37 H 1.08002 * 119.61575 * 179.74867 * 10 9 8 38 38 H 1.08004 * 119.61749 * 179.97438 * 12 11 10 39 39 H 1.08993 * 109.47020 * 301.22767 * 14 13 5 40 40 H 1.08998 * 109.46829 * 61.23529 * 14 13 5 41 41 H 1.08000 * 119.87000 * 359.97438 * 16 15 14 42 42 H 1.08007 * 120.12830 * 180.27943 * 17 16 15 43 43 H 0.97002 * 120.00043 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.12313 * 180.02562 * 27 18 17 45 45 H 1.08007 * 119.87600 * 179.97438 * 28 27 18 46 46 H 1.09000 * 110.37394 * 142.92213 * 29 13 5 47 47 H 1.08996 * 110.37213 * 265.15251 * 29 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9189 1.0183 0.0000 4 6 2.0858 -0.8071 1.2027 5 6 3.4709 -1.2712 0.7051 6 1 4.2423 -0.5932 1.0702 7 6 3.7457 -2.6724 1.1867 8 6 2.8040 -3.6744 1.0060 9 6 3.1018 -4.9495 1.4610 10 6 4.3147 -5.1761 2.0842 11 7 5.1843 -4.1979 2.2433 12 6 4.9365 -2.9738 1.8195 13 7 3.4367 -1.2450 -0.7688 14 6 3.7690 -2.5628 -1.3265 15 6 3.7536 -2.4896 -2.8316 16 6 2.5805 -2.7550 -3.5213 17 6 2.5535 -2.6856 -4.8954 18 6 3.7251 -2.3544 -5.6010 19 6 3.7105 -2.2857 -7.0133 20 1 4.6309 -2.3911 -7.5685 21 6 2.5036 -2.0812 -7.6915 22 7 1.4695 -1.5954 -7.0544 23 14 2.3693 -2.5021 -9.5065 24 1 1.9277 -3.9120 -9.6564 25 1 1.3797 -1.6022 -10.1514 26 1 3.6939 -2.3267 -10.1546 27 6 4.9112 -2.0926 -4.8908 28 6 4.9139 -2.1633 -3.5165 29 6 2.0912 -0.8107 -1.2009 30 1 -0.3633 0.4526 0.9226 31 1 -0.3633 0.5726 -0.8533 32 1 -0.3633 -1.0254 -0.0692 33 1 1.4475 -1.6637 1.4200 34 1 2.1856 -0.1699 2.0813 35 1 1.8627 -3.4670 0.5187 36 1 2.3935 -5.7547 1.3339 37 1 4.5525 -6.1658 2.4452 38 1 5.6731 -2.1981 1.9681 39 1 4.7610 -2.8612 -0.9874 40 1 3.0347 -3.2950 -0.9908 41 1 1.6837 -3.0133 -2.9778 42 1 1.6374 -2.8884 -5.4305 43 1 0.6328 -1.4540 -7.5244 44 1 5.8160 -1.8371 -5.4222 45 1 5.8234 -1.9632 -2.9693 46 1 2.1626 -0.1776 -2.0853 47 1 1.4604 -1.6759 -1.4044 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347173326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:58 Heat of formation + Delta-G solvation = 43.557779 kcal Electronic energy + Delta-G solvation = -27037.155598 eV Core-core repulsion = 23569.384737 eV Total energy + Delta-G solvation = -3467.770861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.89479 -39.98040 -39.05449 -35.88184 -34.65889 -33.55943 -32.85822 -31.53572 -31.14691 -29.70496 -28.17465 -26.84776 -25.34829 -24.32141 -23.96069 -22.89306 -21.80307 -21.14687 -20.79317 -19.23251 -18.11586 -17.60921 -17.18912 -16.73683 -16.69890 -15.98876 -15.83435 -15.66466 -15.33270 -14.88239 -14.58405 -14.45135 -14.26112 -14.16028 -13.96073 -13.84475 -13.72984 -13.39540 -13.17611 -13.07276 -12.87899 -12.73698 -12.58500 -12.52360 -12.14696 -11.99989 -11.87179 -11.61525 -11.50720 -11.37435 -11.23704 -11.00289 -10.57779 -10.40466 -9.97826 -9.36866 -9.25713 -9.07130 -8.64395 -6.32880 0.15819 0.32141 0.94237 1.15929 1.36875 1.49847 1.50856 2.19818 2.65579 2.82344 3.26741 3.45913 3.64552 3.70277 3.73624 3.82239 3.93458 4.03181 4.10997 4.23936 4.26528 4.32690 4.43905 4.44811 4.56732 4.62635 4.63402 4.72615 4.75119 4.83481 4.87680 4.89590 4.98808 5.03751 5.05293 5.15217 5.15946 5.18612 5.29284 5.36317 5.39219 5.47182 5.48793 5.70080 5.77061 5.94608 6.07480 6.10463 6.21882 6.29229 6.39582 6.70343 6.94465 7.03722 7.04489 8.31407 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.015660 B = 0.003372 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.559545 B = 8302.416073 C = 9245.729467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 H 0.084 0.916 4 C -0.120 4.120 5 C 0.111 3.889 6 H 0.101 0.899 7 C -0.145 4.145 8 C -0.073 4.073 9 C -0.172 4.172 10 C 0.086 3.914 11 N -0.509 5.509 12 C 0.096 3.904 13 N -0.521 5.521 14 C 0.127 3.873 15 C -0.200 4.200 16 C -0.090 4.090 17 C -0.191 4.191 18 C 0.080 3.920 19 C -0.502 4.502 20 H 0.072 0.928 21 C 0.037 3.963 22 N -0.821 5.821 23 Si 0.981 3.019 24 H -0.262 1.262 25 H -0.266 1.266 26 H -0.260 1.260 27 C -0.247 4.247 28 C -0.075 4.075 29 C 0.055 3.945 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.157 0.843 37 H 0.177 0.823 38 H 0.165 0.835 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.288 0.712 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.048 0.952 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.144 -1.450 17.236 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.102 0.898 4 C -0.158 4.158 5 C 0.004 3.996 6 H 0.119 0.881 7 C -0.148 4.148 8 C -0.099 4.099 9 C -0.192 4.192 10 C -0.071 4.071 11 N -0.217 5.217 12 C -0.061 4.061 13 N -0.244 5.244 14 C 0.000 4.000 15 C -0.201 4.201 16 C -0.109 4.109 17 C -0.210 4.210 18 C 0.078 3.922 19 C -0.531 4.531 20 H 0.090 0.910 21 C -0.178 4.178 22 N -0.447 5.447 23 Si 0.801 3.199 24 H -0.186 1.186 25 H -0.191 1.191 26 H -0.184 1.184 27 C -0.266 4.266 28 C -0.094 4.094 29 C -0.072 4.072 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.149 0.851 36 H 0.175 0.825 37 H 0.194 0.806 38 H 0.182 0.818 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.123 0.877 46 H 0.066 0.934 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.196 -1.178 17.441 17.618 hybrid contribution -1.311 -0.444 -1.487 2.031 sum -3.507 -1.622 15.954 16.415 Atomic orbital electron populations 1.21674 0.93328 1.01980 1.02505 1.22363 0.96409 0.99316 0.93397 0.89756 1.22950 0.94141 1.00295 0.98426 1.21519 0.99321 0.91662 0.87142 0.88101 1.21197 0.96017 0.97572 0.99984 1.21567 0.99158 0.93283 0.95912 1.22383 0.99348 0.97908 0.99523 1.23191 0.89845 0.98903 0.95159 1.67704 1.33803 1.01196 1.19024 1.22871 0.95209 0.94043 0.93970 1.63981 1.27671 1.26588 1.06202 1.20969 0.99256 0.89497 0.90227 1.19312 0.93708 1.12616 0.94478 1.20673 0.96265 1.00151 0.93761 1.21289 0.99032 1.07089 0.93601 1.17939 0.91957 0.88445 0.93870 1.19848 0.94998 1.46011 0.92277 0.91011 1.26728 0.94317 0.91304 1.05425 1.69878 1.03445 1.30754 1.40582 0.85227 0.79274 0.79250 0.76101 1.18639 1.19060 1.18391 1.21119 0.98252 1.12933 0.94344 1.20593 0.97138 0.98317 0.93362 1.23060 0.88368 0.97916 0.97888 0.90589 0.92910 0.92829 0.90759 0.88715 0.85054 0.82521 0.80572 0.81809 0.92226 0.93815 0.88282 0.87929 0.90132 0.89058 0.87673 0.93363 0.94322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.32 71.98 0.67 -1.92 16 2 C -0.10 -2.10 3.65 -9.24 -0.03 -2.14 16 3 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.12 -2.25 5.80 31.78 0.18 -2.07 16 5 C 0.11 2.56 3.66 44.51 0.16 2.72 16 6 H 0.10 2.15 7.95 -2.39 -0.02 2.13 16 7 C -0.14 -3.30 3.20 -19.77 -0.06 -3.36 16 8 C -0.07 -1.58 6.34 22.47 0.14 -1.44 16 9 C -0.17 -3.31 10.11 22.36 0.23 -3.08 16 10 C 0.09 1.76 11.18 84.69 0.95 2.70 16 11 N -0.51 -12.52 10.36 -195.84 -2.03 -14.55 16 12 C 0.10 2.23 10.78 84.67 0.91 3.14 16 13 N -0.52 -15.90 5.22 -868.44 -4.54 -20.44 16 14 C 0.13 4.33 3.78 85.56 0.32 4.66 16 15 C -0.20 -8.57 4.93 -19.67 -0.10 -8.67 16 16 C -0.09 -4.14 8.57 22.22 0.19 -3.95 16 17 C -0.19 -10.17 8.72 22.73 0.20 -9.97 16 18 C 0.08 4.46 5.60 -21.29 -0.12 4.35 16 19 C -0.50 -27.87 9.06 23.46 0.21 -27.65 16 20 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 21 C 0.04 1.91 5.14 85.26 0.44 2.35 16 22 N -0.82 -43.24 10.86 21.83 0.24 -43.00 16 23 Si 0.98 38.71 29.60 68.60 2.03 40.74 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 25 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 26 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 27 C -0.25 -12.71 9.80 22.73 0.22 -12.49 16 28 C -0.08 -3.47 9.67 22.22 0.21 -3.26 16 29 C 0.06 1.69 4.91 86.94 0.43 2.11 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.01 8.09 -2.39 -0.02 0.99 16 33 H 0.07 1.34 6.32 -2.38 -0.02 1.33 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.13 2.78 6.90 -2.91 -0.02 2.76 16 36 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 37 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.16 3.25 7.99 -2.91 -0.02 3.23 16 39 H 0.06 2.07 7.36 -2.39 -0.02 2.06 16 40 H 0.04 1.41 4.79 -2.39 -0.01 1.40 16 41 H 0.10 4.10 7.16 -2.91 -0.02 4.08 16 42 H 0.10 5.72 6.03 -2.91 -0.02 5.70 16 43 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 44 H 0.09 4.52 8.06 -2.91 -0.02 4.49 16 45 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 46 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.04 1.22 6.30 -2.39 -0.02 1.21 16 Total: -1.00 -62.61 369.61 1.82 -60.78 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: 0.96 Total: 34.43 kcal Atomic # 6 Polarization: -63.12 SS G_CDS: 5.16 Total: -57.96 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -6.33 Total: -77.98 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -62.61 1.82 -60.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347173326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.341 kcal (2) G-P(sol) polarization free energy of solvation -62.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds