Wall clock time and date at job start Tue Mar 31 2020 14:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46824 * 2 1 4 4 C 1.50700 * 109.47061 * 239.99874 * 2 1 3 5 5 C 1.38228 * 119.99873 * 299.72365 * 4 2 1 6 6 C 1.38238 * 119.99971 * 179.78785 * 5 4 2 7 7 C 1.38239 * 119.99690 * 0.44533 * 6 5 4 8 8 C 1.50696 * 119.99808 * 179.83259 * 7 6 5 9 9 C 1.52999 * 109.47106 * 239.97522 * 8 7 6 10 10 C 1.53003 * 109.47053 * 359.97438 * 8 7 6 11 11 C 1.52999 * 109.47051 * 119.97199 * 8 7 6 12 12 C 1.38233 * 119.99809 * 359.80574 * 7 6 5 13 13 C 1.38230 * 120.00456 * 359.97438 * 12 7 6 14 14 S 1.81400 * 109.47242 * 119.99421 * 2 1 3 15 15 O 1.42105 * 109.46788 * 61.38918 * 14 2 1 16 16 C 1.81395 * 103.00021 * 305.00448 * 14 2 1 17 17 C 1.53001 * 109.47015 * 179.97438 * 16 14 2 18 18 C 1.53002 * 109.47247 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.47280 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99933 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00411 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99612 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00494 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46959 * 59.99546 * 23 21 19 25 25 H 1.48494 * 109.47079 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46759 * 299.99928 * 23 21 19 27 27 H 1.08999 * 109.47133 * 60.00204 * 1 2 3 28 28 H 1.08997 * 109.47166 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47281 * 299.99955 * 1 2 3 30 30 H 1.07998 * 120.00056 * 0.02562 * 5 4 2 31 31 H 1.08002 * 119.99876 * 180.26982 * 6 5 4 32 32 H 1.08998 * 109.46931 * 60.00106 * 9 8 7 33 33 H 1.09000 * 109.47095 * 179.97438 * 9 8 7 34 34 H 1.08996 * 109.47324 * 300.00055 * 9 8 7 35 35 H 1.09001 * 109.46992 * 60.00208 * 10 8 7 36 36 H 1.08998 * 109.46889 * 179.97438 * 10 8 7 37 37 H 1.08998 * 109.47329 * 300.00105 * 10 8 7 38 38 H 1.09006 * 109.46742 * 60.00313 * 11 8 7 39 39 H 1.09006 * 109.46985 * 179.97438 * 11 8 7 40 40 H 1.08994 * 109.47313 * 300.00254 * 11 8 7 41 41 H 1.08000 * 119.99695 * 179.97438 * 12 7 6 42 42 H 1.08002 * 120.00134 * 180.02562 * 13 12 7 43 43 H 1.08998 * 109.47216 * 299.99663 * 16 14 2 44 44 H 1.08993 * 109.47612 * 59.99824 * 16 14 2 45 45 H 1.08998 * 109.47121 * 299.99405 * 17 16 14 46 46 H 1.09004 * 109.47162 * 59.99946 * 17 16 14 47 47 H 1.08998 * 109.47454 * 299.99975 * 18 17 16 48 48 H 1.09004 * 109.46729 * 60.00115 * 18 17 16 49 49 H 0.96998 * 120.00115 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7031 -2.0355 -1.4463 6 6 2.1602 -2.6859 -2.5771 7 6 2.9542 -2.0138 -3.4876 8 6 3.4557 -2.7240 -4.7185 9 6 4.9857 -2.7233 -4.7199 10 6 2.9463 -4.1667 -4.7180 11 6 2.9441 -2.0030 -5.9672 12 6 3.2877 -0.6903 -3.2691 13 6 2.8269 -0.0385 -2.1405 14 16 2.1347 -0.8550 1.4812 15 8 1.6877 -2.2038 1.4651 16 6 1.3148 0.0376 2.8309 17 6 1.7279 -0.5735 4.1713 18 6 1.0369 0.1797 5.3098 19 6 1.4432 -0.4226 6.6301 20 1 2.1264 -1.2587 6.6548 21 6 0.9429 0.0937 7.8066 22 7 0.1106 1.1116 7.7765 23 14 1.4471 -0.6524 9.4431 24 1 2.9198 -0.5468 9.6026 25 1 0.7764 0.0785 10.5480 26 1 1.0466 -2.0820 9.4797 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.0855 -2.5615 -0.7333 31 1 1.8994 -3.7200 -2.7479 32 1 5.3501 -3.2370 -3.8303 33 1 5.3484 -3.2374 -5.6101 34 1 5.3486 -1.6955 -4.7203 35 1 1.8563 -4.1672 -4.7170 36 1 3.3087 -4.6802 -5.6086 37 1 3.3107 -4.6804 -3.8284 38 1 3.3071 -0.9751 -5.9675 39 1 3.3072 -2.5164 -6.8576 40 1 1.8542 -2.0035 -5.9661 41 1 3.9084 -0.1653 -3.9801 42 1 3.0871 0.9957 -1.9700 43 1 1.6085 1.0869 2.8037 44 1 0.2340 -0.0403 2.7142 45 1 1.4338 -1.6227 4.1983 46 1 2.8089 -0.4960 4.2883 47 1 1.3313 1.2288 5.2827 48 1 -0.0441 0.1025 5.1930 49 1 -0.2411 1.4751 8.6041 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352369783.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:52 Heat of formation + Delta-G solvation = -50.923190 kcal Electronic energy + Delta-G solvation = -24402.909736 eV Core-core repulsion = 21034.193073 eV Total energy + Delta-G solvation = -3368.716663 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.171 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.13269 -37.13138 -35.41387 -34.43870 -33.56582 -32.01987 -31.21761 -29.07057 -27.66949 -27.56309 -27.39003 -24.33264 -23.44916 -22.46400 -21.64535 -20.27647 -19.35951 -17.43820 -16.73995 -16.30981 -15.83724 -15.36055 -14.89307 -14.78869 -14.57266 -14.51866 -14.43295 -14.09714 -13.82649 -13.56849 -13.29220 -12.92025 -12.75968 -12.50473 -12.37319 -12.28568 -12.17381 -12.00451 -11.93986 -11.88585 -11.65908 -11.32631 -11.24421 -11.23346 -10.85258 -10.82928 -10.76195 -10.71118 -10.60064 -10.00920 -9.76589 -9.31362 -9.11187 -8.97774 -8.55281 -8.35032 -7.86356 -6.00166 -4.02783 1.09975 1.34011 1.85387 2.85413 3.34162 3.38102 3.41195 3.67153 3.97844 4.29899 4.44779 4.46401 4.60110 4.69073 4.77231 4.92684 4.99746 5.09048 5.21175 5.25432 5.29368 5.35338 5.37385 5.44176 5.47853 5.49295 5.54099 5.55426 5.59621 5.63557 5.68625 5.73961 5.75597 5.93324 5.96282 5.98652 6.00219 6.03214 6.23835 6.38291 6.52687 6.53533 6.54529 6.72081 6.92265 7.05638 7.65958 7.78951 7.99217 8.41185 9.03942 9.61293 11.11000 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.032408 B = 0.002102 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.770113 B =13315.706902 C =13638.084877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.379 4.379 3 H 0.126 0.874 4 C -0.063 4.063 5 C -0.111 4.111 6 C -0.118 4.118 7 C -0.075 4.075 8 C -0.030 4.030 9 C -0.138 4.138 10 C -0.145 4.145 11 C -0.137 4.137 12 C -0.117 4.117 13 C -0.109 4.109 14 S 1.232 4.768 15 O -0.839 6.839 16 C -0.433 4.433 17 C -0.093 4.093 18 C 0.027 3.973 19 C -0.523 4.523 20 H 0.056 0.944 21 C 0.056 3.944 22 N -0.896 5.896 23 Si 0.893 3.107 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.112 0.888 44 H 0.083 0.917 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.019 0.981 48 H 0.014 0.986 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.634 -2.397 -28.411 29.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.493 4.493 3 H 0.144 0.856 4 C -0.064 4.064 5 C -0.130 4.130 6 C -0.136 4.136 7 C -0.076 4.076 8 C -0.030 4.030 9 C -0.195 4.195 10 C -0.202 4.202 11 C -0.195 4.195 12 C -0.135 4.135 13 C -0.128 4.128 14 S 1.432 4.568 15 O -0.835 6.835 16 C -0.572 4.572 17 C -0.132 4.132 18 C -0.011 4.011 19 C -0.561 4.561 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.536 5.536 23 Si 0.721 3.279 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.150 0.850 31 H 0.142 0.858 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.130 0.870 44 H 0.102 0.898 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.037 0.963 48 H 0.032 0.968 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.132 -3.060 -28.266 29.862 hybrid contribution -2.171 -0.262 0.860 2.350 sum 6.961 -3.322 -27.406 28.471 Atomic orbital electron populations 1.21836 0.92485 1.02743 1.02937 1.26615 1.02432 1.09403 1.10865 0.85583 1.19171 0.98379 0.93830 0.95009 1.21354 0.99876 0.94254 0.97484 1.21149 0.98211 1.00124 0.94092 1.19792 0.97811 0.94162 0.95793 1.19498 0.95743 0.95026 0.92734 1.21887 0.93645 1.02079 1.01915 1.21971 1.01224 0.95048 1.01977 1.21884 1.01207 1.00177 0.96193 1.20891 1.00694 0.94293 0.97672 1.21021 0.97963 0.99740 0.94067 1.70602 1.15353 0.85414 0.85385 1.93080 1.81030 1.25820 1.83553 1.27708 1.09204 1.09891 1.10399 1.21306 1.00537 0.99675 0.91633 1.19087 0.95527 0.95358 0.91125 1.21242 1.27505 1.16137 0.91220 0.92603 1.25032 0.95105 0.95059 0.99305 1.69956 1.31714 1.24382 1.27509 0.86638 0.78783 0.79309 0.83178 1.20124 1.21302 1.20247 0.92129 0.92188 0.91505 0.84995 0.85782 0.92342 0.92464 0.92380 0.92313 0.92448 0.92113 0.92436 0.92447 0.92576 0.86234 0.85783 0.86972 0.89837 0.92841 0.92227 0.96284 0.96778 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.76 37.16 0.33 -1.40 16 2 C -0.38 -4.17 3.07 -27.88 -0.09 -4.25 16 3 H 0.13 1.02 7.88 -51.92 -0.41 0.61 16 4 C -0.06 -0.72 4.78 -104.63 -0.50 -1.22 16 5 C -0.11 -1.43 8.44 -39.58 -0.33 -1.77 16 6 C -0.12 -1.32 8.98 -39.58 -0.36 -1.68 16 7 C -0.08 -0.72 4.76 -104.63 -0.50 -1.22 16 8 C -0.03 -0.23 0.85 -155.66 -0.13 -0.36 16 9 C -0.14 -0.93 8.29 37.16 0.31 -0.62 16 10 C -0.15 -1.03 7.13 37.16 0.27 -0.77 16 11 C -0.14 -0.91 8.29 37.16 0.31 -0.60 16 12 C -0.12 -1.08 8.71 -39.59 -0.34 -1.42 16 13 C -0.11 -1.05 9.67 -39.58 -0.38 -1.44 16 14 S 1.23 16.22 12.60 -107.50 -1.35 14.87 16 15 O -0.84 -15.58 16.14 -35.23 -0.57 -16.15 16 16 C -0.43 -6.86 5.32 37.16 0.20 -6.67 16 17 C -0.09 -1.90 5.16 -26.73 -0.14 -2.04 16 18 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 19 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 20 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 23 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.82 7.41 -51.93 -0.38 0.44 16 29 H 0.07 0.80 6.51 -51.93 -0.34 0.46 16 30 H 0.13 1.97 6.21 -52.49 -0.33 1.64 16 31 H 0.12 1.25 5.90 -52.49 -0.31 0.94 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.36 7.39 -51.93 -0.38 -0.02 16 35 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 38 H 0.06 0.36 7.39 -51.93 -0.38 -0.02 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.12 0.86 7.10 -52.49 -0.37 0.48 16 42 H 0.12 0.91 7.95 -52.49 -0.42 0.49 16 43 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.08 1.41 6.90 -51.93 -0.36 1.05 16 45 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 395.91 15.07 5.97 5.97 Total: -1.00 -34.73 395.91 -10.81 -45.54 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -8.65 Total: -2.06 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: -1.92 Total: -38.64 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.74 Total: -26.35 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.57 Total: -16.15 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 16.22 SS G_CDS: -1.35 Total: 14.87 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.73 -10.81 -45.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352369783.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.382 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds