Wall clock time and date at job start Tue Mar 31 2020 14:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.50696 * 109.47386 * 120.00507 * 2 1 3 5 5 C 1.38238 * 119.99767 * 240.00465 * 4 2 1 6 6 C 1.38235 * 120.00108 * 179.97438 * 5 4 2 7 7 C 1.38243 * 119.99617 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99586 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47103 * 59.99828 * 8 7 6 10 10 C 1.52999 * 109.46573 * 179.97438 * 8 7 6 11 11 C 1.52997 * 109.47238 * 299.99634 * 8 7 6 12 12 C 1.38233 * 120.00248 * 0.25361 * 7 6 5 13 13 C 1.38234 * 120.00185 * 60.01871 * 4 2 1 14 14 S 1.81404 * 109.47004 * 240.00350 * 2 1 3 15 15 O 1.42108 * 109.46720 * 171.38765 * 14 2 1 16 16 C 1.81400 * 102.99904 * 54.99955 * 14 2 1 17 17 C 1.53007 * 109.46875 * 180.02562 * 16 14 2 18 18 C 1.52998 * 109.46903 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.47034 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99605 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00039 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99862 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99897 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47005 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.46831 * 120.00446 * 23 21 19 26 26 H 1.48498 * 109.47033 * 240.00198 * 23 21 19 27 27 H 1.09002 * 109.47153 * 59.99916 * 1 2 3 28 28 H 1.09001 * 109.47289 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 299.99744 * 1 2 3 30 30 H 1.08000 * 120.00559 * 359.97438 * 5 4 2 31 31 H 1.07999 * 120.00165 * 179.97438 * 6 5 4 32 32 H 1.09000 * 109.47140 * 59.99953 * 9 8 7 33 33 H 1.09001 * 109.47230 * 179.97438 * 9 8 7 34 34 H 1.09001 * 109.47375 * 299.99936 * 9 8 7 35 35 H 1.09001 * 109.47362 * 60.00657 * 10 8 7 36 36 H 1.09002 * 109.46716 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47486 * 299.99934 * 10 8 7 38 38 H 1.09001 * 109.46832 * 60.00314 * 11 8 7 39 39 H 1.09002 * 109.47153 * 180.02562 * 11 8 7 40 40 H 1.08996 * 109.46952 * 300.00294 * 11 8 7 41 41 H 1.08004 * 119.99934 * 179.72684 * 12 7 6 42 42 H 1.07999 * 119.99990 * 0.02562 * 13 4 2 43 43 H 1.09000 * 109.46898 * 299.99723 * 16 14 2 44 44 H 1.08994 * 109.47397 * 60.00234 * 16 14 2 45 45 H 1.09002 * 109.46755 * 299.99980 * 17 16 14 46 46 H 1.08994 * 109.47014 * 59.99880 * 17 16 14 47 47 H 1.09000 * 109.46819 * 299.99573 * 18 17 16 48 48 H 1.09004 * 109.47327 * 59.99522 * 18 17 16 49 49 H 0.97000 * 119.99563 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 2.8271 -0.0387 2.1403 6 6 3.2875 -0.6902 3.2692 7 6 2.9536 -2.0137 3.4878 8 6 3.4561 -2.7242 4.7183 9 6 2.9461 -2.0031 5.9676 10 6 2.9457 -4.1665 4.7184 11 6 4.9861 -2.7241 4.7182 12 6 2.1637 -2.6872 2.5750 13 6 1.6988 -2.0341 1.4488 14 16 2.1346 -0.8551 -1.4812 15 8 3.5415 -0.6838 -1.5858 16 6 1.3148 0.0376 -2.8309 17 6 1.7278 -0.5736 -4.1714 18 6 1.0368 0.1797 -5.3098 19 6 1.4441 -0.4219 -6.6302 20 1 2.1277 -1.2576 -6.6548 21 6 0.9439 0.0947 -7.8066 22 7 0.1118 1.1127 -7.7765 23 14 1.4493 -0.6506 -9.4433 24 1 2.3879 -1.7765 -9.2057 25 1 0.2446 -1.1521 -10.1518 26 1 2.1169 0.3842 -10.2733 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.0882 0.9952 1.9694 31 1 3.9087 -0.1654 3.9800 32 1 1.8561 -2.0032 5.9676 33 1 3.3091 -2.5172 6.8575 34 1 3.3093 -0.9754 5.9677 35 1 3.3088 -4.6806 3.8284 36 1 3.3087 -4.6803 5.6086 37 1 1.8557 -4.1663 4.7186 38 1 5.3493 -1.6964 4.7183 39 1 5.3495 -3.2384 5.6080 40 1 5.3494 -3.2378 3.8282 41 1 1.9066 -3.7226 2.7436 42 1 1.0785 -2.5591 0.7376 43 1 0.2339 -0.0403 -2.7141 44 1 1.6085 1.0868 -2.8037 45 1 2.8087 -0.4961 -4.2884 46 1 1.4337 -1.6228 -4.1983 47 1 -0.0441 0.1025 -5.1930 48 1 1.3313 1.2289 -5.2826 49 1 -0.2397 1.4763 -8.6042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352369784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:54 Heat of formation + Delta-G solvation = -72.561853 kcal Electronic energy + Delta-G solvation = -24329.622741 eV Core-core repulsion = 20959.967755 eV Total energy + Delta-G solvation = -3369.654986 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.87426 -37.80434 -36.88588 -36.34053 -34.40705 -34.00192 -32.02283 -29.97674 -29.16481 -28.19557 -28.08787 -25.40367 -25.13423 -23.29230 -22.68018 -21.93625 -20.05313 -18.73372 -18.22818 -17.54526 -16.98015 -16.56003 -16.17851 -16.16157 -15.89542 -15.54699 -15.10132 -15.06460 -14.64660 -14.51844 -14.40569 -14.18464 -13.94708 -13.89775 -13.55227 -13.31021 -13.06947 -12.93595 -12.76784 -12.73648 -12.67108 -12.51705 -12.50590 -12.42928 -12.30508 -12.05643 -11.82335 -11.74357 -11.60504 -11.49519 -11.33724 -11.27627 -10.75475 -10.57753 -9.81369 -9.50703 -9.10160 -8.21919 -6.33203 0.17007 0.50588 0.75556 1.39036 1.39760 1.53388 1.67659 2.40041 2.74183 2.91695 3.10954 3.55081 3.73554 3.83120 3.97166 4.02961 4.13851 4.15675 4.16239 4.29963 4.34979 4.43913 4.57224 4.59764 4.66288 4.79522 4.81935 4.84377 4.87217 4.93269 5.00856 5.02506 5.06809 5.07550 5.12643 5.16533 5.17446 5.20698 5.27904 5.37178 5.41834 5.45760 5.48975 5.59980 5.66425 5.68542 5.77299 5.82356 6.12308 6.22258 6.83455 7.36097 8.89784 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.031499 B = 0.002097 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.705761 B =13347.198589 C =13633.085351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.365 4.365 3 H 0.078 0.922 4 C -0.075 4.075 5 C -0.135 4.135 6 C -0.121 4.121 7 C -0.079 4.079 8 C -0.030 4.030 9 C -0.136 4.136 10 C -0.144 4.144 11 C -0.140 4.140 12 C -0.119 4.119 13 C -0.123 4.123 14 S 1.287 4.713 15 O -0.913 6.913 16 C -0.437 4.437 17 C -0.088 4.088 18 C 0.028 3.972 19 C -0.547 4.547 20 H 0.060 0.940 21 C -0.002 4.002 22 N -0.932 5.932 23 Si 0.965 3.035 24 H -0.262 1.262 25 H -0.272 1.272 26 H -0.282 1.282 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.148 0.852 44 H 0.061 0.939 45 H 0.028 0.972 46 H 0.087 0.913 47 H 0.011 0.989 48 H -0.021 1.021 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.065 -11.177 30.227 32.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.483 4.483 3 H 0.096 0.904 4 C -0.077 4.077 5 C -0.155 4.155 6 C -0.139 4.139 7 C -0.079 4.079 8 C -0.030 4.030 9 C -0.193 4.193 10 C -0.201 4.201 11 C -0.197 4.197 12 C -0.136 4.136 13 C -0.141 4.141 14 S 1.490 4.510 15 O -0.909 6.909 16 C -0.574 4.574 17 C -0.127 4.127 18 C -0.011 4.011 19 C -0.585 4.585 20 H 0.078 0.922 21 C -0.199 4.199 22 N -0.573 5.573 23 Si 0.790 3.210 24 H -0.186 1.186 25 H -0.197 1.197 26 H -0.208 1.208 27 H 0.090 0.910 28 H 0.121 0.879 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.145 0.855 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.172 0.828 42 H 0.180 0.820 43 H 0.166 0.834 44 H 0.080 0.920 45 H 0.047 0.953 46 H 0.105 0.895 47 H 0.029 0.971 48 H -0.002 1.002 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.501 -11.814 30.046 32.289 hybrid contribution 1.070 3.013 -1.243 3.431 sum 1.572 -8.800 28.803 30.159 Atomic orbital electron populations 1.21655 0.87768 1.05507 1.03444 1.26380 1.05647 1.07184 1.09057 0.90365 1.19236 0.98794 0.95202 0.94422 1.21184 0.98852 0.99980 0.95450 1.21065 1.00374 0.95182 0.97268 1.20126 0.97387 0.93638 0.96752 1.19560 0.95615 0.95829 0.92038 1.21869 1.01138 1.00011 0.96290 1.21970 1.01629 0.93901 1.02580 1.21905 0.93799 1.01823 1.02173 1.21517 0.97321 1.01249 0.93557 1.21473 1.00528 0.93131 0.98988 1.69572 0.87035 1.09670 0.84717 1.92986 1.29502 1.83515 1.84854 1.27736 1.12099 1.08155 1.09434 1.21128 0.98503 1.00806 0.92232 1.19021 0.95464 0.93839 0.92732 1.21772 1.27462 1.16565 0.92691 0.92181 1.25997 0.94989 0.95439 1.03506 1.70098 1.32908 1.25673 1.28575 0.85392 0.78469 0.78500 0.78669 1.18623 1.19705 1.20774 0.91046 0.87859 0.91357 0.87344 0.85519 0.92578 0.91157 0.92990 0.92098 0.91406 0.91541 0.93076 0.90971 0.93271 0.82833 0.82040 0.83377 0.91955 0.95298 0.89464 0.97067 1.00230 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.75 71.98 0.63 -1.30 16 2 C -0.36 -8.09 3.07 29.85 0.09 -8.00 16 3 H 0.08 1.99 7.88 -2.39 -0.02 1.97 16 4 C -0.08 -1.66 4.78 -19.87 -0.09 -1.75 16 5 C -0.14 -3.19 9.67 22.27 0.22 -2.98 16 6 C -0.12 -2.42 8.71 22.27 0.19 -2.23 16 7 C -0.08 -1.34 4.76 -19.86 -0.09 -1.43 16 8 C -0.03 -0.38 0.85 -52.93 -0.05 -0.43 16 9 C -0.14 -1.49 8.29 71.98 0.60 -0.89 16 10 C -0.14 -1.35 7.13 71.98 0.51 -0.84 16 11 C -0.14 -1.79 8.29 71.98 0.60 -1.19 16 12 C -0.12 -1.87 8.98 22.27 0.20 -1.67 16 13 C -0.12 -2.09 8.78 22.27 0.20 -1.90 16 14 S 1.29 34.92 12.28 -56.49 -0.69 34.23 16 15 O -0.91 -38.06 18.14 -148.98 -2.70 -40.76 16 16 C -0.44 -14.11 5.32 71.98 0.38 -13.73 16 17 C -0.09 -3.70 5.16 30.60 0.16 -3.55 16 18 C 0.03 1.48 4.97 29.85 0.15 1.63 16 19 C -0.55 -31.83 9.11 25.60 0.23 -31.59 16 20 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 21 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 22 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 23 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 27 H 0.07 1.08 6.51 -2.39 -0.02 1.07 16 28 H 0.10 0.96 7.39 -2.39 -0.02 0.94 16 29 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.11 2.58 7.95 -2.91 -0.02 2.56 16 31 H 0.13 2.19 7.10 -2.91 -0.02 2.17 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.61 7.39 -2.39 -0.02 0.59 16 35 H 0.06 0.58 7.50 -2.39 -0.02 0.57 16 36 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.07 0.55 7.53 -2.39 -0.02 0.53 16 38 H 0.05 0.70 7.39 -2.39 -0.02 0.68 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.15 1.61 5.90 -2.91 -0.02 1.59 16 42 H 0.16 1.63 7.58 -2.91 -0.02 1.61 16 43 H 0.15 3.73 6.90 -2.39 -0.02 3.72 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 47 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 48 H -0.02 -1.23 8.14 -2.38 -0.02 -1.25 16 49 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -81.01 399.27 4.19 -76.82 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.89 Total: 11.22 kcal Atomic # 6 Polarization: -75.86 SS G_CDS: 4.38 Total: -71.48 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.28 Total: -56.91 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -2.70 Total: -40.76 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 34.92 SS G_CDS: -0.69 Total: 34.23 kcal Total: -81.01 4.19 -76.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352369784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.258 kcal (2) G-P(sol) polarization free energy of solvation -81.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds