Wall clock time and date at job start Tue Mar 31 2020 14:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.46790 * 2 1 4 4 C 1.50706 * 109.47030 * 240.00391 * 2 1 3 5 5 C 1.38234 * 120.00196 * 120.00088 * 4 2 1 6 6 C 1.38235 * 119.99814 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00309 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47051 * 59.99870 * 8 7 6 10 10 C 1.52998 * 109.47317 * 180.02562 * 8 7 6 11 11 C 1.53008 * 109.47110 * 300.00014 * 8 7 6 12 12 C 1.38243 * 120.00092 * 359.97438 * 7 6 5 13 13 C 1.38234 * 119.99618 * 359.97438 * 12 7 6 14 14 S 1.81393 * 109.47299 * 120.00223 * 2 1 3 15 15 O 1.42098 * 109.47181 * 188.61325 * 14 2 1 16 16 C 1.81402 * 103.00072 * 304.99865 * 14 2 1 17 17 C 1.52998 * 109.47414 * 179.97438 * 16 14 2 18 18 C 1.52997 * 109.47154 * 180.02562 * 17 16 14 19 19 C 1.50710 * 109.46849 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00240 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99586 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00170 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99686 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47183 * 60.00759 * 23 21 19 25 25 H 1.48500 * 109.47133 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47117 * 300.00488 * 23 21 19 27 27 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47441 * 299.99512 * 1 2 3 29 29 H 1.08994 * 109.47514 * 60.00156 * 1 2 3 30 30 H 1.08000 * 119.99516 * 0.24808 * 5 4 2 31 31 H 1.08000 * 119.99297 * 179.97438 * 6 5 4 32 32 H 1.08998 * 109.46700 * 60.00263 * 9 8 7 33 33 H 1.09001 * 109.46763 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.46832 * 300.00102 * 9 8 7 35 35 H 1.09000 * 109.47307 * 59.99900 * 10 8 7 36 36 H 1.09001 * 109.47171 * 180.02562 * 10 8 7 37 37 H 1.09003 * 109.47272 * 299.99456 * 10 8 7 38 38 H 1.08996 * 109.46853 * 59.99850 * 11 8 7 39 39 H 1.08991 * 109.47086 * 179.97438 * 11 8 7 40 40 H 1.09004 * 109.46857 * 300.00303 * 11 8 7 41 41 H 1.07999 * 120.00235 * 179.97438 * 12 7 6 42 42 H 1.08005 * 119.99804 * 179.97438 * 13 12 7 43 43 H 1.08992 * 109.47111 * 300.00146 * 16 14 2 44 44 H 1.09004 * 109.47055 * 60.00090 * 16 14 2 45 45 H 1.09005 * 109.47017 * 300.00483 * 17 16 14 46 46 H 1.09004 * 109.46782 * 60.00112 * 17 16 14 47 47 H 1.09001 * 109.46896 * 300.00133 * 18 17 16 48 48 H 1.08996 * 109.47427 * 60.00549 * 18 17 16 49 49 H 0.97003 * 119.99683 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 6 2.8270 -0.0385 -2.1405 6 6 3.2882 -0.6903 -3.2689 7 6 2.9551 -2.0140 -3.4872 8 6 3.4573 -2.7244 -4.7177 9 6 4.9874 -2.7233 -4.7183 10 6 2.9478 -4.1671 -4.7174 11 6 2.9463 -2.0038 -5.9669 12 6 2.1612 -2.6862 -2.5767 13 6 1.7009 -2.0348 -1.4478 14 16 2.1347 -0.8551 1.4810 15 8 3.5414 -0.6839 1.5857 16 6 1.3149 0.0374 2.8309 17 6 1.7279 -0.5738 4.1713 18 6 1.0360 0.1785 5.3097 19 6 1.4434 -0.4232 6.6300 20 1 2.1276 -1.2583 6.6547 21 6 0.9432 0.0933 7.8065 22 7 0.1104 1.1107 7.7765 23 14 1.4476 -0.6529 9.4430 24 1 2.9202 -0.5473 9.6024 25 1 0.7761 0.0774 10.5480 26 1 1.0469 -2.0824 9.4797 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.0912 0.9942 -1.9674 31 1 3.9088 -0.1653 -3.9800 32 1 5.3514 -3.2367 -3.8284 33 1 5.3506 -3.2368 -5.6086 34 1 5.3499 -1.6955 -4.7188 35 1 1.8578 -4.1675 -4.7171 36 1 3.3115 -4.6810 -5.6072 37 1 3.3116 -4.6808 -3.8275 38 1 3.3089 -0.9760 -5.9673 39 1 3.3099 -2.5173 -6.8569 40 1 1.8562 -2.0045 -5.9664 41 1 1.9006 -3.7203 -2.7475 42 1 1.0803 -2.5598 -0.7366 43 1 1.6086 1.0866 2.8037 44 1 0.2339 -0.0405 2.7142 45 1 1.4339 -1.6231 4.1981 46 1 2.8089 -0.4963 4.2882 47 1 1.3297 1.2279 5.2829 48 1 -0.0448 0.1006 5.1926 49 1 -0.2418 1.4738 8.6042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352369785.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:58 Heat of formation + Delta-G solvation = -51.787132 kcal Electronic energy + Delta-G solvation = -24328.719417 eV Core-core repulsion = 20959.965290 eV Total energy + Delta-G solvation = -3368.754127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.171 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.16487 -37.13775 -35.45204 -34.45610 -33.56526 -32.02418 -31.28667 -29.06363 -27.69458 -27.56890 -27.40119 -24.36988 -23.46934 -22.53323 -21.71302 -20.27809 -19.40864 -17.36273 -16.73644 -16.29570 -15.93382 -15.38564 -15.00815 -14.73374 -14.65286 -14.57738 -14.38191 -14.13726 -13.83285 -13.63460 -13.35219 -13.05870 -12.88476 -12.46783 -12.38045 -12.24887 -12.03144 -11.99550 -11.96635 -11.86437 -11.66727 -11.38447 -11.33350 -11.22005 -10.85963 -10.83020 -10.75147 -10.72272 -10.66554 -10.06986 -9.77988 -9.31804 -9.11174 -9.03953 -8.53926 -8.35148 -7.92463 -6.00249 -4.02868 1.07724 1.27905 1.79777 2.83700 3.34209 3.38130 3.41257 3.61368 4.01001 4.27604 4.42141 4.46372 4.53802 4.67641 4.74777 4.87124 4.97523 5.05249 5.19711 5.22985 5.28352 5.29863 5.35233 5.43065 5.45298 5.46477 5.53826 5.54781 5.57743 5.62376 5.65632 5.73303 5.74598 5.89355 5.92857 5.95082 5.97837 6.01321 6.23168 6.32353 6.47351 6.47760 6.51862 6.70951 6.86440 7.04852 7.65719 7.78583 7.99029 8.40980 9.03771 9.61191 11.10906 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.031491 B = 0.002097 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.939103 B =13346.431801 C =13632.377746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.380 4.380 3 H 0.093 0.907 4 C -0.052 4.052 5 C -0.111 4.111 6 C -0.111 4.111 7 C -0.077 4.077 8 C -0.030 4.030 9 C -0.139 4.139 10 C -0.144 4.144 11 C -0.138 4.138 12 C -0.115 4.115 13 C -0.119 4.119 14 S 1.229 4.771 15 O -0.844 6.844 16 C -0.434 4.434 17 C -0.093 4.093 18 C 0.027 3.973 19 C -0.523 4.523 20 H 0.056 0.944 21 C 0.056 3.944 22 N -0.896 5.896 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.014 0.986 48 H 0.019 0.981 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.865 -8.764 -28.969 30.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.495 4.495 3 H 0.112 0.888 4 C -0.053 4.053 5 C -0.130 4.130 6 C -0.129 4.129 7 C -0.078 4.078 8 C -0.030 4.030 9 C -0.197 4.197 10 C -0.201 4.201 11 C -0.195 4.195 12 C -0.133 4.133 13 C -0.138 4.138 14 S 1.430 4.570 15 O -0.839 6.839 16 C -0.572 4.572 17 C -0.132 4.132 18 C -0.011 4.011 19 C -0.561 4.561 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.201 1.201 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.099 0.901 44 H 0.133 0.867 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.032 0.968 48 H 0.038 0.962 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.415 -9.387 -28.815 30.338 hybrid contribution 0.813 2.207 1.027 2.566 sum 2.228 -7.180 -27.788 28.787 Atomic orbital electron populations 1.21526 0.90315 1.03269 1.02971 1.26556 1.03667 1.08458 1.10823 0.88842 1.19138 0.97693 0.94054 0.94449 1.21035 0.97846 0.99844 0.94287 1.20899 1.00144 0.94413 0.97466 1.19785 0.97981 0.93988 0.96001 1.19497 0.95690 0.95094 0.92694 1.21899 0.93737 1.02095 1.01934 1.21967 1.01232 0.94908 1.02036 1.21886 1.01236 1.00175 0.96198 1.21147 0.97957 1.00135 0.94042 1.21079 1.00664 0.93863 0.98178 1.70462 0.90010 1.10922 0.85578 1.93105 1.25343 1.81995 1.83494 1.27727 1.09620 1.09377 1.10506 1.21318 1.00620 0.99655 0.91617 1.19089 0.95642 0.95251 0.91109 1.21242 1.27377 1.16291 0.91213 0.92584 1.25032 0.95118 0.95043 0.99301 1.69956 1.31713 1.24366 1.27512 0.86637 0.78779 0.79313 0.83168 1.20250 1.21298 1.20111 0.90922 0.91243 0.92063 0.86534 0.86352 0.92314 0.92407 0.92507 0.92155 0.92455 0.92071 0.92540 0.92427 0.92457 0.85307 0.85025 0.90090 0.86656 0.92115 0.92884 0.96769 0.96221 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 8.76 37.16 0.33 -0.77 16 2 C -0.38 -4.38 3.07 -27.88 -0.09 -4.47 16 3 H 0.09 1.17 7.88 -51.93 -0.41 0.76 16 4 C -0.05 -0.60 4.78 -104.62 -0.50 -1.10 16 5 C -0.11 -1.29 9.67 -39.58 -0.38 -1.68 16 6 C -0.11 -1.13 8.71 -39.59 -0.34 -1.48 16 7 C -0.08 -0.72 4.76 -104.63 -0.50 -1.21 16 8 C -0.03 -0.21 0.85 -155.66 -0.13 -0.35 16 9 C -0.14 -0.99 8.29 37.16 0.31 -0.68 16 10 C -0.14 -0.87 7.13 37.16 0.26 -0.61 16 11 C -0.14 -0.88 8.29 37.16 0.31 -0.57 16 12 C -0.12 -1.05 8.98 -39.58 -0.36 -1.40 16 13 C -0.12 -1.16 8.78 -39.58 -0.35 -1.51 16 14 S 1.23 17.04 12.27 -107.50 -1.32 15.72 16 15 O -0.84 -17.19 18.14 -35.23 -0.64 -17.83 16 16 C -0.43 -7.04 5.32 37.16 0.20 -6.84 16 17 C -0.09 -1.94 5.16 -26.73 -0.14 -2.07 16 18 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 19 C -0.52 -15.00 9.11 -34.43 -0.31 -15.32 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 23 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H 0.07 0.48 7.39 -51.93 -0.38 0.10 16 28 H 0.07 0.61 6.51 -51.93 -0.34 0.27 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.12 1.30 7.95 -52.49 -0.42 0.88 16 31 H 0.12 1.02 7.10 -52.49 -0.37 0.65 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.41 7.39 -51.93 -0.38 0.02 16 35 H 0.06 0.34 7.51 -51.93 -0.39 -0.05 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.37 7.51 -51.93 -0.39 -0.02 16 38 H 0.06 0.36 7.39 -51.93 -0.38 -0.02 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.13 0.89 5.90 -52.49 -0.31 0.58 16 42 H 0.13 0.92 7.59 -52.48 -0.40 0.52 16 43 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.12 1.55 6.90 -51.92 -0.36 1.19 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 399.27 15.07 6.02 6.02 Total: -1.00 -36.21 399.27 -10.88 -47.10 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -8.73 Total: -3.54 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: -1.93 Total: -37.94 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.74 Total: -26.35 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.64 Total: -17.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 17.04 SS G_CDS: -1.32 Total: 15.72 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.21 -10.88 -47.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352369785.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.692 kcal (2) G-P(sol) polarization free energy of solvation -36.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds