Wall clock time and date at job start Tue Mar 31 2020 12:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47054 * 2 1 4 4 H 1.08998 * 109.46928 * 305.00594 * 3 2 1 5 5 C 1.53004 * 109.46888 * 65.00634 * 3 2 1 6 6 N 1.46503 * 109.47172 * 185.00424 * 3 2 1 7 7 N 1.40051 * 125.99165 * 299.96056 * 6 3 2 8 8 C 1.30830 * 108.36538 * 179.75164 * 7 6 3 9 9 C 1.40344 * 108.20630 * 0.44225 * 8 7 6 10 10 N 1.40482 * 126.11652 * 179.81686 * 9 8 7 11 11 C 1.34775 * 119.99815 * 359.68847 * 10 9 8 12 12 O 1.21405 * 120.00024 * 0.02562 * 11 10 9 13 13 C 1.49329 * 119.99825 * 179.97438 * 11 10 9 14 14 O 1.21361 * 119.99999 * 0.02562 * 13 11 10 15 15 N 1.34775 * 119.99825 * 180.02562 * 13 11 10 16 16 C 1.46502 * 120.00053 * 180.02562 * 15 13 11 17 17 H 1.08996 * 109.47077 * 34.99783 * 16 15 13 18 18 C 1.53008 * 109.47016 * 275.00255 * 16 15 13 19 19 C 1.50695 * 109.47337 * 155.00261 * 16 15 13 20 20 H 1.07998 * 120.00418 * 5.62270 * 19 16 15 21 21 C 1.37879 * 120.00201 * 185.62926 * 19 16 15 22 22 N 1.31514 * 120.00393 * 197.18198 * 21 19 16 23 23 Si 1.86804 * 119.99786 * 17.45333 * 21 19 16 24 24 H 1.48502 * 109.47029 * 179.72709 * 23 21 19 25 25 H 1.48503 * 109.46948 * 299.72609 * 23 21 19 26 26 H 1.48492 * 109.47033 * 59.72641 * 23 21 19 27 27 C 1.35219 * 125.99552 * 120.00014 * 6 3 2 28 28 C 1.50706 * 126.17981 * 359.97438 * 27 6 3 29 29 H 1.08999 * 109.46769 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47022 * 299.99103 * 1 2 3 31 31 H 1.08997 * 109.47574 * 59.99630 * 1 2 3 32 32 H 1.09008 * 109.46967 * 240.00547 * 2 1 3 33 33 H 1.08997 * 109.47574 * 120.00370 * 2 1 3 34 34 H 1.09001 * 109.46513 * 299.99867 * 5 3 2 35 35 H 1.09000 * 109.46903 * 60.00014 * 5 3 2 36 36 H 1.09001 * 109.47043 * 179.97438 * 5 3 2 37 37 H 1.07999 * 125.90095 * 180.29238 * 8 7 6 38 38 H 0.96994 * 119.99994 * 179.68772 * 10 9 8 39 39 H 0.96996 * 120.00288 * 0.02562 * 15 13 11 40 40 H 1.09000 * 109.46665 * 306.33574 * 18 16 15 41 41 H 1.08994 * 109.46957 * 66.33318 * 18 16 15 42 42 H 1.09002 * 109.47065 * 186.34089 * 18 16 15 43 43 H 0.97001 * 119.99221 * 355.17115 * 22 21 19 44 44 H 1.08996 * 109.47272 * 269.99899 * 28 27 6 45 45 H 1.09005 * 109.46837 * 29.99937 * 28 27 6 46 46 H 1.09002 * 109.47385 * 149.99607 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 1.6353 2.1265 1.3075 6 7 3.5000 1.4443 -0.1205 7 7 4.4004 0.8511 0.7734 8 6 5.6148 1.0558 0.3319 9 6 5.5301 1.7973 -0.8566 10 7 6.6118 2.2276 -1.6430 11 6 7.8738 1.9368 -1.2700 12 8 8.0758 1.3026 -0.2547 13 6 9.0235 2.3937 -2.1062 14 8 8.8215 3.0273 -3.1214 15 7 10.2855 2.1024 -1.7335 16 6 11.4136 2.5511 -2.5536 17 1 11.1820 3.5229 -2.9894 18 6 11.6660 1.5378 -3.6719 19 6 12.6454 2.6669 -1.6932 20 1 12.6169 2.3441 -0.6630 21 6 13.8089 3.1850 -2.2213 22 7 14.9555 2.9839 -1.6094 23 14 13.7556 4.1793 -3.8018 24 1 15.1279 4.6257 -4.1523 25 1 13.2138 3.3371 -4.8984 26 1 12.8828 5.3654 -3.6112 27 6 4.2148 2.0196 -1.1138 28 6 3.6537 2.7717 -2.2930 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.5490 2.1251 1.3970 35 1 2.0700 1.5874 2.1492 36 1 1.9990 3.1540 1.3077 37 1 6.5254 0.7152 0.8021 38 1 6.4503 2.7340 -2.4544 39 1 10.4470 1.5957 -0.9224 40 1 11.7862 0.5438 -3.2411 41 1 10.8196 1.5363 -4.3586 42 1 12.5721 1.8115 -4.2125 43 1 14.9745 2.5318 -0.7514 44 1 3.4755 2.0783 -3.1149 45 1 2.7146 3.2462 -2.0079 46 1 4.3650 3.5348 -2.6092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361762658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:48 Heat of formation + Delta-G solvation = -3.649768 kcal Electronic energy + Delta-G solvation = -26957.267812 eV Core-core repulsion = 23076.600615 eV Total energy + Delta-G solvation = -3880.667197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72729 -40.14225 -38.21719 -36.78526 -35.43734 -34.54421 -32.72848 -32.44414 -30.92661 -29.86981 -28.88267 -27.18909 -25.30512 -24.94815 -24.25857 -22.62193 -21.24629 -20.26731 -19.93353 -19.47526 -18.38140 -17.28269 -17.14830 -16.34927 -15.92205 -15.79361 -15.39047 -15.25182 -14.96036 -14.42207 -14.00094 -13.90211 -13.52805 -13.44085 -13.33074 -13.20497 -12.92598 -12.74427 -12.67833 -12.55642 -12.28458 -12.24117 -12.03281 -11.82810 -11.53774 -11.49002 -11.31299 -11.17970 -10.82206 -10.75768 -10.52928 -10.08522 -9.83323 -9.38068 -9.21527 -9.13391 -8.41344 -8.35544 -7.78523 -6.62108 -4.25690 1.38407 1.88552 2.11414 2.74809 2.78136 3.35190 3.41670 3.56687 3.65986 4.02475 4.09577 4.32500 4.36087 4.38674 4.51478 4.69261 4.73301 4.86029 4.92329 5.03466 5.06168 5.13043 5.13868 5.20768 5.35517 5.38388 5.49576 5.51156 5.55751 5.61777 5.80859 5.84152 6.04640 6.29484 6.45690 6.56955 6.71875 6.82015 6.82479 7.00702 7.22498 7.24227 7.51050 7.58972 7.90303 8.20121 8.28527 8.50645 8.77537 9.43541 10.79244 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.034295 B = 0.002289 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.244874 B =12228.763697 C =12584.458925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.164 3.836 4 H 0.100 0.900 5 C -0.163 4.163 6 N -0.362 5.362 7 N -0.283 5.283 8 C 0.055 3.945 9 C -0.001 4.001 10 N -0.617 5.617 11 C 0.508 3.492 12 O -0.513 6.513 13 C 0.499 3.501 14 O -0.540 6.540 15 N -0.661 5.661 16 C 0.239 3.761 17 H 0.046 0.954 18 C -0.162 4.162 19 C -0.620 4.620 20 H 0.065 0.935 21 C 0.039 3.961 22 N -0.894 5.894 23 Si 1.042 2.958 24 H -0.282 1.282 25 H -0.271 1.271 26 H -0.279 1.279 27 C 0.049 3.951 28 C -0.091 4.091 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.207 0.793 38 H 0.419 0.581 39 H 0.407 0.593 40 H 0.047 0.953 41 H 0.031 0.969 42 H 0.066 0.934 43 H 0.270 0.730 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.439 -2.560 0.294 29.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C 0.063 3.937 4 H 0.118 0.882 5 C -0.221 4.221 6 N -0.147 5.147 7 N -0.104 5.104 8 C -0.132 4.132 9 C -0.105 4.105 10 N -0.264 5.264 11 C 0.291 3.709 12 O -0.387 6.387 13 C 0.277 3.723 14 O -0.419 6.419 15 N -0.310 5.310 16 C 0.137 3.863 17 H 0.064 0.936 18 C -0.221 4.221 19 C -0.658 4.658 20 H 0.083 0.917 21 C -0.168 4.168 22 N -0.527 5.527 23 Si 0.870 3.130 24 H -0.208 1.208 25 H -0.197 1.197 26 H -0.205 1.205 27 C -0.081 4.081 28 C -0.149 4.149 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.223 0.777 38 H 0.257 0.743 39 H 0.242 0.758 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -29.200 -2.300 0.120 29.291 hybrid contribution -0.418 -0.442 0.587 0.846 sum -29.618 -2.742 0.707 29.753 Atomic orbital electron populations 1.21804 0.94428 1.02505 1.02163 1.21867 0.96354 0.95000 1.03812 1.21324 0.74134 0.98108 1.00173 0.88229 1.22189 1.02014 1.01015 0.96878 1.48356 1.05904 1.42727 1.17713 1.77353 0.98525 1.19704 1.14833 1.24518 0.96590 0.97970 0.94120 1.17456 0.86164 1.09294 0.97603 1.42465 1.03233 1.54154 1.26525 1.20641 0.83953 0.80395 0.85923 1.90620 1.84748 1.38321 1.25016 1.19704 0.84588 0.82132 0.85850 1.90709 1.84997 1.40557 1.25625 1.46225 1.04549 1.52694 1.27553 1.19221 0.83498 0.93800 0.89811 0.93648 1.22520 1.00447 1.00454 0.98637 1.22060 0.95790 1.48526 0.99427 0.91714 1.25710 0.91325 0.95497 1.04251 1.70870 1.25544 1.39894 1.16372 0.84077 0.76285 0.77069 0.75586 1.20795 1.19694 1.20543 1.20336 0.90428 1.02585 0.94708 1.20425 1.01672 0.99370 0.93431 0.91981 0.92030 0.92462 0.91391 0.90355 0.90498 0.90932 0.92059 0.77693 0.74340 0.75762 0.93372 0.94991 0.91495 0.91952 0.90066 0.90855 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.67 37.16 0.36 -0.30 16 2 C -0.13 -0.89 5.66 -26.73 -0.15 -1.04 16 3 C 0.16 1.19 3.11 -67.93 -0.21 0.98 16 4 H 0.10 0.51 6.68 -51.93 -0.35 0.16 16 5 C -0.16 -1.08 9.21 37.16 0.34 -0.74 16 6 N -0.36 -3.91 3.28 -50.49 -0.17 -4.08 16 7 N -0.28 -3.86 12.41 30.72 0.38 -3.48 16 8 C 0.05 0.80 10.84 -17.19 -0.19 0.62 16 9 C 0.00 -0.01 6.86 -83.95 -0.58 -0.58 16 10 N -0.62 -8.55 5.45 -10.48 -0.06 -8.61 16 11 C 0.51 8.53 7.86 -11.64 -0.09 8.44 16 12 O -0.51 -9.19 13.63 5.45 0.07 -9.12 16 13 C 0.50 9.59 7.85 -11.64 -0.09 9.50 16 14 O -0.54 -11.12 16.14 5.49 0.09 -11.03 16 15 N -0.66 -13.82 5.06 -55.40 -0.28 -14.10 16 16 C 0.24 5.68 2.14 -69.08 -0.15 5.53 16 17 H 0.05 1.14 6.23 -51.93 -0.32 0.81 16 18 C -0.16 -3.58 9.16 37.16 0.34 -3.24 16 19 C -0.62 -16.71 9.00 -34.44 -0.31 -17.02 16 20 H 0.06 1.84 7.96 -52.49 -0.42 1.43 16 21 C 0.04 1.09 5.29 -17.82 -0.09 1.00 16 22 N -0.89 -26.43 13.70 55.43 0.76 -25.67 16 23 Si 1.04 24.49 26.29 -169.99 -4.47 20.03 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.27 -5.89 5.76 56.52 0.33 -5.57 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.05 0.52 6.96 -81.95 -0.57 -0.05 16 28 C -0.09 -0.61 9.77 36.01 0.35 -0.26 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.23 6.57 -51.93 -0.34 -0.11 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.33 6.56 -51.93 -0.34 -0.01 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.21 3.17 5.92 -52.49 -0.31 2.86 16 38 H 0.42 5.03 7.55 -40.82 -0.31 4.72 16 39 H 0.41 8.15 7.99 -40.82 -0.33 7.83 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.50 4.88 -51.93 -0.25 1.25 16 43 H 0.27 7.94 8.73 -40.82 -0.36 7.58 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.36 7.10 -51.93 -0.37 -0.01 16 46 H 0.08 0.53 7.61 -51.93 -0.39 0.14 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -31.89 376.36 -5.80 -37.69 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.76 Total: 9.87 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.04 Total: 2.82 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.64 Total: -55.94 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.16 Total: -20.14 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -4.47 Total: 20.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.89 -5.80 -37.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361762658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.036 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds