Wall clock time and date at job start Tue Mar 31 2020 12:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47054 * 2 1 4 4 H 1.08998 * 109.46928 * 305.00594 * 3 2 1 5 5 C 1.53004 * 109.46888 * 65.00634 * 3 2 1 6 6 N 1.46503 * 109.47172 * 185.00424 * 3 2 1 7 7 N 1.40051 * 125.99165 * 299.96056 * 6 3 2 8 8 C 1.30830 * 108.36538 * 179.75164 * 7 6 3 9 9 C 1.40344 * 108.20630 * 0.44225 * 8 7 6 10 10 N 1.40482 * 126.11652 * 179.81686 * 9 8 7 11 11 C 1.34775 * 119.99815 * 359.68847 * 10 9 8 12 12 O 1.21405 * 120.00024 * 0.02562 * 11 10 9 13 13 C 1.49329 * 119.99825 * 179.97438 * 11 10 9 14 14 O 1.21361 * 119.99999 * 0.02562 * 13 11 10 15 15 N 1.34775 * 119.99825 * 180.02562 * 13 11 10 16 16 C 1.46502 * 120.00053 * 180.02562 * 15 13 11 17 17 H 1.08996 * 109.47077 * 34.99783 * 16 15 13 18 18 C 1.53008 * 109.47016 * 275.00255 * 16 15 13 19 19 C 1.50695 * 109.47337 * 155.00261 * 16 15 13 20 20 H 1.07998 * 120.00418 * 5.62270 * 19 16 15 21 21 C 1.37879 * 120.00201 * 185.62926 * 19 16 15 22 22 N 1.31514 * 120.00393 * 197.18198 * 21 19 16 23 23 Si 1.86804 * 119.99786 * 17.45333 * 21 19 16 24 24 H 1.48502 * 109.47029 * 179.72709 * 23 21 19 25 25 H 1.48503 * 109.46948 * 299.72609 * 23 21 19 26 26 H 1.48492 * 109.47033 * 59.72641 * 23 21 19 27 27 C 1.35219 * 125.99552 * 120.00014 * 6 3 2 28 28 C 1.50706 * 126.17981 * 359.97438 * 27 6 3 29 29 H 1.08999 * 109.46769 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47022 * 299.99103 * 1 2 3 31 31 H 1.08997 * 109.47574 * 59.99630 * 1 2 3 32 32 H 1.09008 * 109.46967 * 240.00547 * 2 1 3 33 33 H 1.08997 * 109.47574 * 120.00370 * 2 1 3 34 34 H 1.09001 * 109.46513 * 299.99867 * 5 3 2 35 35 H 1.09000 * 109.46903 * 60.00014 * 5 3 2 36 36 H 1.09001 * 109.47043 * 179.97438 * 5 3 2 37 37 H 1.07999 * 125.90095 * 180.29238 * 8 7 6 38 38 H 0.96994 * 119.99994 * 179.68772 * 10 9 8 39 39 H 0.96996 * 120.00288 * 0.02562 * 15 13 11 40 40 H 1.09000 * 109.46665 * 306.33574 * 18 16 15 41 41 H 1.08994 * 109.46957 * 66.33318 * 18 16 15 42 42 H 1.09002 * 109.47065 * 186.34089 * 18 16 15 43 43 H 0.97001 * 119.99221 * 355.17115 * 22 21 19 44 44 H 1.08996 * 109.47272 * 269.99899 * 28 27 6 45 45 H 1.09005 * 109.46837 * 29.99937 * 28 27 6 46 46 H 1.09002 * 109.47385 * 149.99607 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 1.6353 2.1265 1.3075 6 7 3.5000 1.4443 -0.1205 7 7 4.4004 0.8511 0.7734 8 6 5.6148 1.0558 0.3319 9 6 5.5301 1.7973 -0.8566 10 7 6.6118 2.2276 -1.6430 11 6 7.8738 1.9368 -1.2700 12 8 8.0758 1.3026 -0.2547 13 6 9.0235 2.3937 -2.1062 14 8 8.8215 3.0273 -3.1214 15 7 10.2855 2.1024 -1.7335 16 6 11.4136 2.5511 -2.5536 17 1 11.1820 3.5229 -2.9894 18 6 11.6660 1.5378 -3.6719 19 6 12.6454 2.6669 -1.6932 20 1 12.6169 2.3441 -0.6630 21 6 13.8089 3.1850 -2.2213 22 7 14.9555 2.9839 -1.6094 23 14 13.7556 4.1793 -3.8018 24 1 15.1279 4.6257 -4.1523 25 1 13.2138 3.3371 -4.8984 26 1 12.8828 5.3654 -3.6112 27 6 4.2148 2.0196 -1.1138 28 6 3.6537 2.7717 -2.2930 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.5490 2.1251 1.3970 35 1 2.0700 1.5874 2.1492 36 1 1.9990 3.1540 1.3077 37 1 6.5254 0.7152 0.8021 38 1 6.4503 2.7340 -2.4544 39 1 10.4470 1.5957 -0.9224 40 1 11.7862 0.5438 -3.2411 41 1 10.8196 1.5363 -4.3586 42 1 12.5721 1.8115 -4.2125 43 1 14.9745 2.5318 -0.7514 44 1 3.4755 2.0783 -3.1149 45 1 2.7146 3.2462 -2.0079 46 1 4.3650 3.5348 -2.6092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361762658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:47 Heat of formation + Delta-G solvation = -26.824963 kcal Electronic energy + Delta-G solvation = -26958.272764 eV Core-core repulsion = 23076.600615 eV Total energy + Delta-G solvation = -3881.672149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.71850 -41.51735 -39.66445 -37.51254 -37.08583 -35.81394 -34.46087 -33.48928 -31.74661 -31.54720 -29.59694 -28.07219 -26.95005 -26.08210 -25.42934 -23.54600 -22.60899 -21.47086 -21.25336 -20.73324 -19.85928 -18.93000 -18.22352 -17.55483 -17.10798 -16.91727 -16.65922 -16.31206 -15.92187 -15.64972 -15.24763 -15.07645 -15.00452 -14.65575 -14.50567 -14.22884 -13.96468 -13.91011 -13.60107 -13.52788 -13.37659 -13.32245 -13.11755 -12.75802 -12.64931 -12.58665 -12.40704 -12.20903 -11.97722 -11.95370 -11.70776 -11.64082 -11.56809 -11.17275 -10.69546 -10.47851 -10.26840 -10.14310 -8.83219 -8.80154 -6.47166 0.15097 0.80896 1.14506 1.48625 1.54723 1.57039 1.63701 1.74073 2.26126 2.44338 2.72939 3.00694 3.40064 3.45181 3.61876 3.81737 3.88053 4.06174 4.12030 4.32454 4.40172 4.44161 4.46304 4.60073 4.66815 4.69682 4.71751 4.72580 4.84508 4.90232 4.96260 5.01623 5.03442 5.07851 5.10380 5.28392 5.32192 5.40041 5.44774 5.55216 5.64121 5.95475 5.99017 6.05308 6.43411 6.48515 6.60795 6.78857 6.97842 7.30350 8.57422 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.034295 B = 0.002289 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.244874 B =12228.763697 C =12584.458925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.153 3.847 4 H 0.134 0.866 5 C -0.159 4.159 6 N -0.354 5.354 7 N -0.306 5.306 8 C 0.035 3.965 9 C -0.038 4.038 10 N -0.595 5.595 11 C 0.511 3.489 12 O -0.531 6.531 13 C 0.504 3.496 14 O -0.550 6.550 15 N -0.670 5.670 16 C 0.242 3.758 17 H 0.040 0.960 18 C -0.156 4.156 19 C -0.620 4.620 20 H 0.035 0.965 21 C -0.007 4.007 22 N -0.924 5.924 23 Si 1.076 2.924 24 H -0.283 1.283 25 H -0.240 1.240 26 H -0.268 1.268 27 C 0.074 3.926 28 C -0.094 4.094 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.188 0.812 38 H 0.429 0.571 39 H 0.409 0.591 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.257 0.743 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.161 -1.615 -1.947 33.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.151 0.849 5 C -0.217 4.217 6 N -0.138 5.138 7 N -0.128 5.128 8 C -0.151 4.151 9 C -0.142 4.142 10 N -0.242 5.242 11 C 0.292 3.708 12 O -0.408 6.408 13 C 0.284 3.716 14 O -0.429 6.429 15 N -0.319 5.319 16 C 0.138 3.862 17 H 0.057 0.943 18 C -0.214 4.214 19 C -0.658 4.658 20 H 0.054 0.946 21 C -0.208 4.208 22 N -0.559 5.559 23 Si 0.897 3.103 24 H -0.209 1.209 25 H -0.164 1.164 26 H -0.193 1.193 27 C -0.057 4.057 28 C -0.152 4.152 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.205 0.795 38 H 0.269 0.731 39 H 0.244 0.756 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -32.998 -1.373 -2.110 33.093 hybrid contribution 0.525 -0.760 1.378 1.659 sum -32.472 -2.133 -0.732 32.550 Atomic orbital electron populations 1.21783 0.92190 1.03008 1.03381 1.21812 0.98174 0.94309 1.02293 1.21815 0.72028 0.98955 1.01866 0.84861 1.22175 1.03734 1.00158 0.95615 1.48817 1.07041 1.41169 1.16811 1.77306 0.98664 1.20800 1.16037 1.24340 0.96572 0.99060 0.95111 1.17600 0.87033 1.11485 0.98067 1.42207 1.02321 1.53141 1.26534 1.20071 0.84244 0.80915 0.85540 1.90637 1.84969 1.39484 1.25662 1.19988 0.84587 0.81283 0.85752 1.90689 1.85241 1.40827 1.26138 1.46073 1.04827 1.53382 1.27655 1.18995 0.83026 0.94277 0.89864 0.94252 1.22408 1.00982 0.99867 0.98181 1.22219 0.97441 1.47485 0.98615 0.94644 1.27029 0.90946 0.95853 1.06953 1.70988 1.26773 1.41665 1.16438 0.83673 0.76645 0.76657 0.73310 1.20914 1.16390 1.19326 1.20996 0.89421 1.00372 0.94891 1.20684 1.02939 0.99594 0.91970 0.91954 0.91176 0.90799 0.92287 0.92584 0.87606 0.93164 0.92450 0.79519 0.73143 0.75574 0.93164 0.93203 0.91802 0.93417 0.88148 0.88111 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.67 71.98 0.70 -0.14 16 2 C -0.13 -1.48 5.66 30.59 0.17 -1.31 16 3 C 0.15 1.79 3.11 44.99 0.14 1.93 16 4 H 0.13 0.71 6.68 -2.39 -0.02 0.69 16 5 C -0.16 -1.74 9.21 71.98 0.66 -1.07 16 6 N -0.35 -7.05 3.28 -313.66 -1.03 -8.08 16 7 N -0.31 -8.43 12.41 -56.71 -0.70 -9.13 16 8 C 0.03 1.05 10.84 85.35 0.93 1.98 16 9 C -0.04 -0.99 6.86 37.71 0.26 -0.73 16 10 N -0.59 -15.88 5.45 -305.41 -1.67 -17.54 16 11 C 0.51 17.07 7.86 87.23 0.69 17.76 16 12 O -0.53 -19.59 13.63 -3.42 -0.05 -19.63 16 13 C 0.50 19.09 7.85 87.23 0.68 19.77 16 14 O -0.55 -21.78 16.14 -3.28 -0.05 -21.83 16 15 N -0.67 -28.08 5.06 -447.55 -2.27 -30.34 16 16 C 0.24 11.37 2.14 44.25 0.09 11.46 16 17 H 0.04 1.92 6.23 -2.39 -0.01 1.91 16 18 C -0.16 -6.65 9.16 71.98 0.66 -5.99 16 19 C -0.62 -34.00 9.00 25.60 0.23 -33.77 16 20 H 0.04 2.10 7.96 -2.91 -0.02 2.08 16 21 C -0.01 -0.40 5.29 84.66 0.45 0.04 16 22 N -0.92 -55.95 13.70 21.45 0.29 -55.66 16 23 Si 1.08 48.48 26.29 68.60 1.80 50.29 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 25 H -0.24 -9.57 5.76 99.48 0.57 -9.00 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 C 0.07 1.43 6.96 41.48 0.29 1.71 16 28 C -0.09 -0.86 9.77 71.24 0.70 -0.16 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.30 6.57 -2.39 -0.02 0.28 16 31 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 0.54 6.56 -2.39 -0.02 0.52 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.19 6.20 5.92 -2.91 -0.02 6.19 16 38 H 0.43 9.44 7.55 -92.71 -0.70 8.74 16 39 H 0.41 16.82 7.99 -92.71 -0.74 16.08 16 40 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.06 2.74 4.88 -2.39 -0.01 2.73 16 43 H 0.26 15.72 8.73 -92.71 -0.81 14.91 16 44 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.10 0.43 7.10 -2.38 -0.02 0.41 16 46 H 0.09 0.78 7.61 -2.39 -0.02 0.77 16 Total: -1.00 -71.18 376.36 2.39 -68.79 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: -0.59 Total: 31.67 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 6.64 Total: 11.47 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -5.37 Total: -120.76 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -0.10 Total: -41.47 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 1.80 Total: 50.29 kcal Total: -71.18 2.39 -68.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361762658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.966 kcal (2) G-P(sol) polarization free energy of solvation -71.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds