Wall clock time and date at job start Tue Mar 31 2020 12:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47161 * 2 1 4 4 H 1.09005 * 109.46926 * 55.00242 * 3 2 1 5 5 C 1.52991 * 109.47536 * 294.99940 * 3 2 1 6 6 N 1.46500 * 109.47076 * 174.99800 * 3 2 1 7 7 N 1.40054 * 125.99736 * 59.98063 * 6 3 2 8 8 C 1.30820 * 108.36945 * 180.02562 * 7 6 3 9 9 C 1.40342 * 108.20787 * 359.97438 * 8 7 6 10 10 N 1.40485 * 126.11315 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00033 * 0.02562 * 10 9 8 12 12 O 1.21407 * 120.00088 * 359.97438 * 11 10 9 13 13 C 1.49330 * 119.99944 * 180.02562 * 11 10 9 14 14 O 1.21358 * 119.99832 * 359.97438 * 13 11 10 15 15 N 1.34777 * 119.99944 * 180.02562 * 13 11 10 16 16 C 1.46493 * 120.00036 * 179.97438 * 15 13 11 17 17 H 1.09006 * 109.47194 * 325.00105 * 16 15 13 18 18 C 1.52997 * 109.47181 * 84.99862 * 16 15 13 19 19 C 1.50703 * 109.47210 * 204.99937 * 16 15 13 20 20 H 1.07989 * 119.99917 * 325.87345 * 19 16 15 21 21 C 1.37877 * 119.99665 * 145.87315 * 19 16 15 22 22 N 1.31518 * 119.99718 * 177.64134 * 21 19 16 23 23 Si 1.86798 * 120.00409 * 357.63523 * 21 19 16 24 24 H 1.48496 * 109.47284 * 274.92510 * 23 21 19 25 25 H 1.48509 * 109.46806 * 34.92742 * 23 21 19 26 26 H 1.48499 * 109.47141 * 154.91986 * 23 21 19 27 27 C 1.35230 * 125.99435 * 240.33097 * 6 3 2 28 28 C 1.50707 * 126.17860 * 359.96034 * 27 6 3 29 29 H 1.09002 * 109.46825 * 59.99838 * 1 2 3 30 30 H 1.09001 * 109.46966 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47535 * 299.99708 * 1 2 3 32 32 H 1.09007 * 109.47141 * 239.99983 * 2 1 3 33 33 H 1.08997 * 109.47188 * 120.00449 * 2 1 3 34 34 H 1.09001 * 109.47361 * 179.97438 * 5 3 2 35 35 H 1.09005 * 109.47259 * 300.00098 * 5 3 2 36 36 H 1.09003 * 109.47071 * 59.99630 * 5 3 2 37 37 H 1.08000 * 125.89921 * 180.02562 * 8 7 6 38 38 H 0.96997 * 119.99864 * 180.02562 * 10 9 8 39 39 H 0.96997 * 120.00102 * 359.97438 * 15 13 11 40 40 H 1.09000 * 109.47220 * 56.13495 * 18 16 15 41 41 H 1.09000 * 109.47341 * 176.13400 * 18 16 15 42 42 H 1.08996 * 109.47554 * 296.13783 * 18 16 15 43 43 H 0.96999 * 119.99984 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.47112 * 270.21588 * 28 27 6 45 45 H 1.08996 * 109.47113 * 30.21903 * 28 27 6 46 46 H 1.09002 * 109.46760 * 150.22299 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1265 -1.3072 6 7 3.5000 1.4442 0.1204 7 7 4.4004 0.8500 -0.7728 8 6 5.6149 1.0591 -0.3341 9 6 5.5301 1.7964 0.8571 10 7 6.6118 2.2267 1.6434 11 6 7.8738 1.9352 1.2707 12 8 8.0758 1.3005 0.2556 13 6 9.0236 2.3921 2.1068 14 8 8.8217 3.0262 3.1217 15 7 10.2857 2.1011 1.7338 16 6 11.4137 2.5498 2.5538 17 1 11.1820 3.5216 2.9899 18 6 11.6664 1.5363 3.6717 19 6 12.6454 2.6660 1.6932 20 1 12.7994 1.9781 0.8752 21 6 13.5755 3.6508 1.9504 22 7 14.6727 3.7235 1.2289 23 14 13.2772 4.8819 3.3233 24 1 12.4458 6.0013 2.8124 25 1 12.5702 4.2116 4.4441 26 1 14.5783 5.4113 3.8048 27 6 4.2146 2.0141 1.1171 28 6 3.6532 2.7604 2.2999 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.9983 3.1543 -1.3070 35 1 2.0699 1.5875 -2.1491 36 1 0.5490 2.1252 -1.3969 37 1 6.5258 0.7231 -0.8072 38 1 6.4504 2.7335 2.4545 39 1 10.4470 1.5946 0.9225 40 1 11.8303 0.5500 3.2378 41 1 12.5477 1.8343 4.2399 42 1 10.8015 1.5026 4.3341 43 1 15.3272 4.4161 1.4100 44 1 3.5578 3.8172 2.0508 45 1 2.6727 2.3565 2.5523 46 1 4.3232 2.6471 3.1522 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361762659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:51 Heat of formation + Delta-G solvation = -4.092723 kcal Electronic energy + Delta-G solvation = -26977.011004 eV Core-core repulsion = 23096.324599 eV Total energy + Delta-G solvation = -3880.686405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.69635 -40.09610 -38.17470 -36.76274 -35.38127 -34.48841 -32.69410 -32.37599 -30.90837 -29.96960 -28.85793 -27.15985 -25.42144 -25.20136 -24.32020 -22.59721 -21.25270 -20.23592 -19.95157 -19.44991 -18.28187 -17.20867 -16.72438 -16.33710 -15.87222 -15.63742 -15.41516 -15.20928 -15.07932 -14.40515 -14.16872 -13.90723 -13.56926 -13.37919 -13.31389 -13.17196 -12.93120 -12.67969 -12.58029 -12.53190 -12.45437 -12.26278 -12.00729 -11.58786 -11.50401 -11.29887 -11.25887 -11.12741 -10.85873 -10.78680 -10.73139 -10.59283 -9.92352 -9.35287 -9.26605 -9.14782 -8.77738 -8.31437 -7.75210 -6.26702 -4.31644 1.42097 1.92332 2.14164 2.78384 2.81405 3.23589 3.31110 3.36347 3.70737 4.04627 4.12308 4.28202 4.34667 4.37459 4.53801 4.71619 4.74956 4.87306 4.91637 5.04898 5.06723 5.15072 5.19913 5.23321 5.38339 5.39970 5.51391 5.52610 5.57405 5.64362 5.82655 5.86178 6.08267 6.22446 6.44442 6.57612 6.75134 6.78972 6.85311 7.00501 7.18236 7.27329 7.39506 7.59815 7.86003 8.10294 8.42356 8.60057 8.76603 9.32915 10.84731 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031029 B = 0.002346 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.169887 B =11931.149368 C =12181.903682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.164 3.836 4 H 0.100 0.900 5 C -0.163 4.163 6 N -0.362 5.362 7 N -0.283 5.283 8 C 0.055 3.945 9 C 0.000 4.000 10 N -0.618 5.618 11 C 0.508 3.492 12 O -0.512 6.512 13 C 0.497 3.503 14 O -0.543 6.543 15 N -0.663 5.663 16 C 0.229 3.771 17 H 0.054 0.946 18 C -0.149 4.149 19 C -0.533 4.533 20 H 0.082 0.918 21 C 0.082 3.918 22 N -0.885 5.885 23 Si 0.874 3.126 24 H -0.272 1.272 25 H -0.259 1.259 26 H -0.285 1.285 27 C 0.048 3.952 28 C -0.090 4.090 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.207 0.793 38 H 0.419 0.581 39 H 0.407 0.593 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.269 0.731 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.416 -3.691 0.410 28.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.063 3.937 4 H 0.117 0.883 5 C -0.220 4.220 6 N -0.147 5.147 7 N -0.104 5.104 8 C -0.132 4.132 9 C -0.104 4.104 10 N -0.265 5.265 11 C 0.290 3.710 12 O -0.386 6.386 13 C 0.276 3.724 14 O -0.422 6.422 15 N -0.312 5.312 16 C 0.128 3.872 17 H 0.071 0.929 18 C -0.208 4.208 19 C -0.570 4.570 20 H 0.100 0.900 21 C -0.123 4.123 22 N -0.520 5.520 23 Si 0.701 3.299 24 H -0.198 1.198 25 H -0.184 1.184 26 H -0.211 1.211 27 C -0.082 4.082 28 C -0.149 4.149 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.224 0.776 38 H 0.256 0.744 39 H 0.243 0.757 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -28.962 -4.108 -0.543 29.257 hybrid contribution 0.539 1.092 1.300 1.782 sum -28.424 -3.016 0.757 28.593 Atomic orbital electron populations 1.21804 0.94450 1.02491 1.02156 1.21875 0.96343 0.95060 1.03819 1.21314 0.74169 0.98054 1.00183 0.88260 1.22178 1.01987 1.01020 0.96845 1.48352 1.05896 1.42862 1.17637 1.77347 0.98532 1.19597 1.14954 1.24525 0.96584 0.97951 0.94111 1.17462 0.86166 1.09384 0.97426 1.42487 1.03267 1.54219 1.26506 1.20697 0.83939 0.80369 0.85965 1.90620 1.84734 1.38249 1.24988 1.19767 0.84651 0.82146 0.85813 1.90705 1.85048 1.40702 1.25787 1.46626 1.04433 1.52612 1.27538 1.19306 0.83842 0.94394 0.89699 0.92860 1.22246 0.99870 1.00204 0.98501 1.20982 1.02492 1.17010 1.16565 0.89962 1.24942 0.94769 0.96709 0.95919 1.69875 1.09191 1.33722 1.39258 0.86897 0.77859 0.82062 0.83125 1.19769 1.18368 1.21052 1.20332 0.90452 1.02781 0.94586 1.20419 1.01545 0.99472 0.93444 0.92024 0.91991 0.92486 0.90339 0.91405 0.92051 0.90928 0.90527 0.77641 0.74384 0.75709 0.93235 0.92230 0.95053 0.92112 0.90082 0.90884 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.67 37.16 0.36 -0.31 16 2 C -0.13 -0.90 5.66 -26.73 -0.15 -1.06 16 3 C 0.16 1.21 3.11 -67.94 -0.21 1.00 16 4 H 0.10 0.52 6.69 -51.93 -0.35 0.18 16 5 C -0.16 -1.09 9.21 37.15 0.34 -0.75 16 6 N -0.36 -3.96 3.28 -50.50 -0.17 -4.12 16 7 N -0.28 -3.89 12.41 30.72 0.38 -3.51 16 8 C 0.06 0.81 10.84 -17.19 -0.19 0.63 16 9 C 0.00 0.00 6.86 -83.95 -0.58 -0.57 16 10 N -0.62 -8.64 5.45 -10.48 -0.06 -8.70 16 11 C 0.51 8.54 7.86 -11.64 -0.09 8.45 16 12 O -0.51 -9.17 13.63 5.45 0.07 -9.09 16 13 C 0.50 9.57 7.85 -11.64 -0.09 9.48 16 14 O -0.54 -11.26 16.14 5.49 0.09 -11.18 16 15 N -0.66 -13.69 5.06 -55.41 -0.28 -13.97 16 16 C 0.23 5.35 2.16 -69.09 -0.15 5.21 16 17 H 0.05 1.33 4.89 -51.93 -0.25 1.07 16 18 C -0.15 -3.17 9.44 37.16 0.35 -2.82 16 19 C -0.53 -14.18 9.05 -34.44 -0.31 -14.50 16 20 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 21 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 22 N -0.88 -25.79 13.96 55.43 0.77 -25.02 16 23 Si 0.87 20.96 26.74 -169.99 -4.55 16.41 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.26 -6.02 6.87 56.52 0.39 -5.63 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 C 0.05 0.52 6.96 -81.95 -0.57 -0.05 16 28 C -0.09 -0.63 9.76 36.01 0.35 -0.27 16 29 H 0.06 0.24 6.56 -51.93 -0.34 -0.10 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.34 6.56 -51.93 -0.34 0.00 16 37 H 0.21 3.19 5.92 -52.49 -0.31 2.88 16 38 H 0.42 5.10 7.55 -40.82 -0.31 4.79 16 39 H 0.41 8.00 8.06 -40.82 -0.33 7.67 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 1.27 7.92 -51.93 -0.41 0.86 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.37 7.12 -51.93 -0.37 0.00 16 46 H 0.08 0.54 7.61 -51.93 -0.40 0.15 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -31.75 380.18 -5.82 -37.57 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -6.78 Total: 9.30 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -1.03 Total: 6.57 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.65 Total: -55.32 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.16 Total: -20.27 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.55 Total: 16.41 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.75 -5.82 -37.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361762659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.480 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds