Wall clock time and date at job start Tue Mar 31 2020 12:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47161 * 2 1 4 4 H 1.09005 * 109.46926 * 55.00242 * 3 2 1 5 5 C 1.52991 * 109.47536 * 294.99940 * 3 2 1 6 6 N 1.46500 * 109.47076 * 174.99800 * 3 2 1 7 7 N 1.40054 * 125.99736 * 59.98063 * 6 3 2 8 8 C 1.30820 * 108.36945 * 180.02562 * 7 6 3 9 9 C 1.40342 * 108.20787 * 359.97438 * 8 7 6 10 10 N 1.40485 * 126.11315 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00033 * 0.02562 * 10 9 8 12 12 O 1.21407 * 120.00088 * 359.97438 * 11 10 9 13 13 C 1.49330 * 119.99944 * 180.02562 * 11 10 9 14 14 O 1.21358 * 119.99832 * 359.97438 * 13 11 10 15 15 N 1.34777 * 119.99944 * 180.02562 * 13 11 10 16 16 C 1.46493 * 120.00036 * 179.97438 * 15 13 11 17 17 H 1.09006 * 109.47194 * 325.00105 * 16 15 13 18 18 C 1.52997 * 109.47181 * 84.99862 * 16 15 13 19 19 C 1.50703 * 109.47210 * 204.99937 * 16 15 13 20 20 H 1.07989 * 119.99917 * 325.87345 * 19 16 15 21 21 C 1.37877 * 119.99665 * 145.87315 * 19 16 15 22 22 N 1.31518 * 119.99718 * 177.64134 * 21 19 16 23 23 Si 1.86798 * 120.00409 * 357.63523 * 21 19 16 24 24 H 1.48496 * 109.47284 * 274.92510 * 23 21 19 25 25 H 1.48509 * 109.46806 * 34.92742 * 23 21 19 26 26 H 1.48499 * 109.47141 * 154.91986 * 23 21 19 27 27 C 1.35230 * 125.99435 * 240.33097 * 6 3 2 28 28 C 1.50707 * 126.17860 * 359.96034 * 27 6 3 29 29 H 1.09002 * 109.46825 * 59.99838 * 1 2 3 30 30 H 1.09001 * 109.46966 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47535 * 299.99708 * 1 2 3 32 32 H 1.09007 * 109.47141 * 239.99983 * 2 1 3 33 33 H 1.08997 * 109.47188 * 120.00449 * 2 1 3 34 34 H 1.09001 * 109.47361 * 179.97438 * 5 3 2 35 35 H 1.09005 * 109.47259 * 300.00098 * 5 3 2 36 36 H 1.09003 * 109.47071 * 59.99630 * 5 3 2 37 37 H 1.08000 * 125.89921 * 180.02562 * 8 7 6 38 38 H 0.96997 * 119.99864 * 180.02562 * 10 9 8 39 39 H 0.96997 * 120.00102 * 359.97438 * 15 13 11 40 40 H 1.09000 * 109.47220 * 56.13495 * 18 16 15 41 41 H 1.09000 * 109.47341 * 176.13400 * 18 16 15 42 42 H 1.08996 * 109.47554 * 296.13783 * 18 16 15 43 43 H 0.96999 * 119.99984 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.47112 * 270.21588 * 28 27 6 45 45 H 1.08996 * 109.47113 * 30.21903 * 28 27 6 46 46 H 1.09002 * 109.46760 * 150.22299 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1265 -1.3072 6 7 3.5000 1.4442 0.1204 7 7 4.4004 0.8500 -0.7728 8 6 5.6149 1.0591 -0.3341 9 6 5.5301 1.7964 0.8571 10 7 6.6118 2.2267 1.6434 11 6 7.8738 1.9352 1.2707 12 8 8.0758 1.3005 0.2556 13 6 9.0236 2.3921 2.1068 14 8 8.8217 3.0262 3.1217 15 7 10.2857 2.1011 1.7338 16 6 11.4137 2.5498 2.5538 17 1 11.1820 3.5216 2.9899 18 6 11.6664 1.5363 3.6717 19 6 12.6454 2.6660 1.6932 20 1 12.7994 1.9781 0.8752 21 6 13.5755 3.6508 1.9504 22 7 14.6727 3.7235 1.2289 23 14 13.2772 4.8819 3.3233 24 1 12.4458 6.0013 2.8124 25 1 12.5702 4.2116 4.4441 26 1 14.5783 5.4113 3.8048 27 6 4.2146 2.0141 1.1171 28 6 3.6532 2.7604 2.2999 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.9983 3.1543 -1.3070 35 1 2.0699 1.5875 -2.1491 36 1 0.5490 2.1252 -1.3969 37 1 6.5258 0.7231 -0.8072 38 1 6.4504 2.7335 2.4545 39 1 10.4470 1.5946 0.9225 40 1 11.8303 0.5500 3.2378 41 1 12.5477 1.8343 4.2399 42 1 10.8015 1.5026 4.3341 43 1 15.3272 4.4161 1.4100 44 1 3.5578 3.8172 2.0508 45 1 2.6727 2.3565 2.5523 46 1 4.3232 2.6471 3.1522 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361762659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:50 Heat of formation + Delta-G solvation = -26.840738 kcal Electronic energy + Delta-G solvation = -26977.997432 eV Core-core repulsion = 23096.324599 eV Total energy + Delta-G solvation = -3881.672833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.69332 -41.47613 -39.62291 -37.49317 -37.00458 -35.76108 -34.38411 -33.47051 -31.78831 -31.55826 -29.57934 -28.04714 -27.34983 -26.09780 -25.42058 -23.52545 -22.60116 -21.47464 -21.22795 -20.66990 -19.64667 -18.52680 -18.22005 -17.49470 -17.09325 -16.92937 -16.79482 -16.30348 -15.91348 -15.85821 -15.25339 -15.08523 -14.92733 -14.54575 -14.51124 -14.28387 -13.94601 -13.84464 -13.55021 -13.36042 -13.30776 -13.10456 -13.07163 -12.84950 -12.73974 -12.61150 -12.56796 -12.34858 -12.19383 -11.96054 -11.84890 -11.69204 -11.55465 -11.25845 -10.88227 -10.62423 -10.24900 -10.03473 -8.78049 -8.38301 -6.47309 0.19109 0.83124 1.16760 1.34345 1.37129 1.47507 1.60138 1.66535 2.28560 2.30150 2.71696 3.04664 3.42329 3.51443 3.63462 3.82525 3.89685 4.07816 4.13223 4.34621 4.39171 4.41089 4.47624 4.61114 4.67954 4.72086 4.73582 4.77273 4.84814 4.92501 4.98202 5.02629 5.04712 5.08214 5.11257 5.26833 5.29341 5.40910 5.43287 5.54153 5.66497 5.91681 6.03704 6.15091 6.51259 6.57965 6.66221 6.82622 7.01582 7.21741 8.76644 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031029 B = 0.002346 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.169887 B =11931.149368 C =12181.903682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.153 3.847 4 H 0.133 0.867 5 C -0.159 4.159 6 N -0.354 5.354 7 N -0.306 5.306 8 C 0.035 3.965 9 C -0.037 4.037 10 N -0.597 5.597 11 C 0.510 3.490 12 O -0.529 6.529 13 C 0.503 3.497 14 O -0.554 6.554 15 N -0.670 5.670 16 C 0.233 3.767 17 H 0.044 0.956 18 C -0.144 4.144 19 C -0.533 4.533 20 H 0.052 0.948 21 C 0.030 3.970 22 N -0.930 5.930 23 Si 0.932 3.068 24 H -0.272 1.272 25 H -0.245 1.245 26 H -0.278 1.278 27 C 0.073 3.927 28 C -0.094 4.094 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.105 0.895 37 H 0.189 0.811 38 H 0.429 0.571 39 H 0.410 0.590 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.272 0.728 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.041 -2.744 2.463 32.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.054 3.946 4 H 0.151 0.849 5 C -0.216 4.216 6 N -0.139 5.139 7 N -0.128 5.128 8 C -0.150 4.150 9 C -0.141 4.141 10 N -0.244 5.244 11 C 0.292 3.708 12 O -0.405 6.405 13 C 0.283 3.717 14 O -0.434 6.434 15 N -0.320 5.320 16 C 0.131 3.869 17 H 0.062 0.938 18 C -0.203 4.203 19 C -0.571 4.571 20 H 0.070 0.930 21 C -0.171 4.171 22 N -0.568 5.568 23 Si 0.755 3.245 24 H -0.197 1.197 25 H -0.168 1.168 26 H -0.203 1.203 27 C -0.058 4.058 28 C -0.152 4.152 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.124 0.876 37 H 0.206 0.794 38 H 0.268 0.732 39 H 0.246 0.754 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -32.653 -3.175 1.510 32.841 hybrid contribution 1.462 0.739 0.590 1.741 sum -31.190 -2.436 2.100 31.356 Atomic orbital electron populations 1.21783 0.92212 1.03004 1.03368 1.21820 0.98161 0.94343 1.02320 1.21803 0.72067 0.98916 1.01863 0.84925 1.22163 1.03706 1.00148 0.95598 1.48812 1.07036 1.41292 1.16752 1.77301 0.98673 1.20670 1.16162 1.24351 0.96576 0.99027 0.95079 1.17605 0.87023 1.11598 0.97867 1.42227 1.02385 1.53229 1.26529 1.20114 0.84223 0.80881 0.85587 1.90637 1.84949 1.39365 1.25597 1.20026 0.84701 0.81309 0.85704 1.90685 1.85316 1.41064 1.26368 1.46380 1.04678 1.53222 1.27678 1.19108 0.83227 0.94815 0.89798 0.93829 1.22148 1.00409 0.99830 0.97882 1.21150 1.03880 1.16096 1.16000 0.92994 1.25716 0.94475 0.98638 0.98290 1.69992 1.10392 1.34986 1.41409 0.85977 0.78083 0.79699 0.80716 1.19720 1.16795 1.20304 1.20986 0.89463 1.00564 0.94803 1.20674 1.02928 0.99949 0.91612 0.91185 0.91944 0.90824 0.92551 0.92279 0.92480 0.93133 0.87638 0.79418 0.73223 0.75367 0.92517 0.92369 0.93578 0.91907 0.88292 0.88122 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.67 71.98 0.70 -0.16 16 2 C -0.13 -1.50 5.66 30.59 0.17 -1.33 16 3 C 0.15 1.82 3.11 44.99 0.14 1.96 16 4 H 0.13 0.75 6.69 -2.38 -0.02 0.73 16 5 C -0.16 -1.77 9.21 71.98 0.66 -1.11 16 6 N -0.35 -7.14 3.28 -313.68 -1.03 -8.17 16 7 N -0.31 -8.47 12.41 -56.72 -0.70 -9.18 16 8 C 0.04 1.07 10.84 85.36 0.93 2.00 16 9 C -0.04 -0.98 6.86 37.71 0.26 -0.72 16 10 N -0.60 -16.08 5.45 -305.41 -1.67 -17.75 16 11 C 0.51 17.11 7.86 87.23 0.69 17.79 16 12 O -0.53 -19.47 13.63 -3.42 -0.05 -19.51 16 13 C 0.50 19.06 7.85 87.23 0.68 19.75 16 14 O -0.55 -22.21 16.14 -3.27 -0.05 -22.26 16 15 N -0.67 -27.76 5.06 -447.57 -2.27 -30.02 16 16 C 0.23 10.82 2.16 44.25 0.10 10.92 16 17 H 0.04 2.12 4.89 -2.38 -0.01 2.11 16 18 C -0.14 -5.94 9.44 71.98 0.68 -5.26 16 19 C -0.53 -28.95 9.05 25.60 0.23 -28.72 16 20 H 0.05 3.07 8.06 -2.92 -0.02 3.04 16 21 C 0.03 1.65 5.47 84.65 0.46 2.11 16 22 N -0.93 -55.47 13.96 21.45 0.30 -55.17 16 23 Si 0.93 42.99 26.74 68.60 1.83 44.82 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.24 -10.61 6.87 99.48 0.68 -9.92 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 C 0.07 1.42 6.96 41.48 0.29 1.71 16 28 C -0.09 -0.89 9.76 71.24 0.70 -0.20 16 29 H 0.07 0.31 6.56 -2.39 -0.02 0.29 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.11 0.56 6.56 -2.39 -0.02 0.55 16 37 H 0.19 6.24 5.92 -2.91 -0.02 6.22 16 38 H 0.43 9.60 7.55 -92.71 -0.70 8.90 16 39 H 0.41 16.53 8.06 -92.71 -0.75 15.78 16 40 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.06 2.39 7.92 -2.39 -0.02 2.37 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.27 15.15 8.31 -92.71 -0.77 14.37 16 44 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.10 0.46 7.12 -2.39 -0.02 0.44 16 46 H 0.09 0.81 7.61 -2.39 -0.02 0.79 16 Total: -1.00 -70.53 380.18 2.60 -67.93 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -0.45 Total: 30.57 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 6.68 Total: 18.74 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -5.36 Total: -120.28 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -0.10 Total: -41.77 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.83 Total: 44.82 kcal Total: -70.53 2.60 -67.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361762659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.084 kcal (2) G-P(sol) polarization free energy of solvation -70.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds