Wall clock time and date at job start Tue Mar 31 2020 12:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47136 * 2 1 4 4 H 1.09003 * 109.46888 * 305.00147 * 3 2 1 5 5 C 1.53000 * 109.47100 * 64.99658 * 3 2 1 6 6 N 1.46496 * 109.47078 * 185.00292 * 3 2 1 7 7 N 1.40062 * 125.99006 * 299.99127 * 6 3 2 8 8 C 1.30820 * 108.35921 * 179.75706 * 7 6 3 9 9 C 1.40332 * 108.21849 * 0.38720 * 8 7 6 10 10 N 1.40477 * 126.12348 * 179.87698 * 9 8 7 11 11 C 1.34777 * 119.99599 * 359.68786 * 10 9 8 12 12 O 1.21403 * 120.00022 * 0.02562 * 11 10 9 13 13 C 1.49328 * 120.00292 * 180.02562 * 11 10 9 14 14 O 1.21358 * 119.99485 * 359.97438 * 13 11 10 15 15 N 1.34777 * 120.00292 * 179.97438 * 13 11 10 16 16 C 1.46493 * 120.00036 * 179.97438 * 15 13 11 17 17 H 1.09006 * 109.47194 * 325.00105 * 16 15 13 18 18 C 1.52997 * 109.47181 * 84.99862 * 16 15 13 19 19 C 1.50703 * 109.47210 * 204.99937 * 16 15 13 20 20 H 1.07994 * 119.99733 * 325.86857 * 19 16 15 21 21 C 1.37878 * 120.00066 * 145.87198 * 19 16 15 22 22 N 1.31509 * 120.00286 * 177.63982 * 21 19 16 23 23 Si 1.86806 * 119.99840 * 357.63750 * 21 19 16 24 24 H 1.48496 * 109.47212 * 274.92261 * 23 21 19 25 25 H 1.48500 * 109.46793 * 34.92601 * 23 21 19 26 26 H 1.48500 * 109.46690 * 154.92056 * 23 21 19 27 27 C 1.35227 * 125.99932 * 119.99908 * 6 3 2 28 28 C 1.50696 * 126.17710 * 0.02562 * 27 6 3 29 29 H 1.08997 * 109.47033 * 300.00466 * 1 2 3 30 30 H 1.09005 * 109.46655 * 60.00141 * 1 2 3 31 31 H 1.08997 * 109.46826 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47189 * 240.00271 * 2 1 3 33 33 H 1.08994 * 109.47086 * 119.99627 * 2 1 3 34 34 H 1.08994 * 109.47060 * 60.00524 * 5 3 2 35 35 H 1.09007 * 109.46890 * 180.02562 * 5 3 2 36 36 H 1.08999 * 109.47026 * 299.99661 * 5 3 2 37 37 H 1.08009 * 125.89252 * 180.22201 * 8 7 6 38 38 H 0.96997 * 120.00299 * 179.68848 * 10 9 8 39 39 H 0.97000 * 119.99550 * 359.97438 * 15 13 11 40 40 H 1.08996 * 109.47554 * 296.13783 * 18 16 15 41 41 H 1.09000 * 109.47220 * 56.13495 * 18 16 15 42 42 H 1.09000 * 109.47341 * 176.13400 * 18 16 15 43 43 H 0.97000 * 120.00720 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.47377 * 270.00241 * 28 27 6 45 45 H 1.09006 * 109.47081 * 29.99650 * 28 27 6 46 46 H 1.08998 * 109.47660 * 149.99811 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 7 3.5001 1.4443 -0.1204 7 7 4.4004 0.8505 0.7732 8 6 5.6147 1.0554 0.3318 9 6 5.5302 1.7966 -0.8568 10 7 6.6118 2.2259 -1.6437 11 6 7.8738 1.9344 -1.2710 12 8 8.0757 1.3005 -0.2555 13 6 9.0237 2.3913 -2.1070 14 8 8.8218 3.0246 -3.1223 15 7 10.2857 2.1002 -1.7340 16 6 11.4137 2.5479 -2.5545 17 1 11.1328 2.5154 -3.6072 18 6 11.7867 3.9811 -2.1703 19 6 12.5951 1.6418 -2.3216 20 1 12.7619 1.2123 -1.3449 21 6 13.4631 1.3612 -3.3555 22 7 14.5197 0.6082 -3.1411 23 14 13.1383 2.0508 -5.0610 24 1 12.2078 1.1516 -5.7895 25 1 12.5306 3.4005 -4.9416 26 1 14.4183 2.1485 -5.8074 27 6 4.2150 2.0195 -1.1137 28 6 3.6540 2.7726 -2.2924 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 2.0699 1.5877 2.1491 35 1 1.9982 3.1545 1.3071 36 1 0.5489 2.1254 1.3968 37 1 6.5254 0.7154 0.8026 38 1 6.4504 2.7321 -2.4552 39 1 10.4470 1.5944 -0.9222 40 1 10.9561 4.6475 -2.4028 41 1 12.0012 4.0270 -1.1026 42 1 12.6685 4.2900 -2.7317 43 1 15.1306 0.4111 -3.8683 44 1 3.4750 2.0796 -3.1145 45 1 2.7154 3.2475 -2.0068 46 1 4.3657 3.5352 -2.6085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361762660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:55 Heat of formation + Delta-G solvation = -4.084470 kcal Electronic energy + Delta-G solvation = -26977.934352 eV Core-core repulsion = 23097.248305 eV Total energy + Delta-G solvation = -3880.686047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.69647 -40.09649 -38.17489 -36.76027 -35.38109 -34.48840 -32.69728 -32.37704 -30.90133 -29.96978 -28.86352 -27.16019 -25.42059 -25.19669 -24.32001 -22.59844 -21.25238 -20.23588 -19.95129 -19.44944 -18.28179 -17.20689 -16.72392 -16.33284 -15.87622 -15.64059 -15.32864 -15.32004 -15.06433 -14.37462 -14.18392 -13.89005 -13.54844 -13.42627 -13.32375 -13.19642 -12.88989 -12.66540 -12.57949 -12.53209 -12.45817 -12.26440 -12.01544 -11.58864 -11.49967 -11.29883 -11.25348 -11.12746 -10.85884 -10.78706 -10.73120 -10.59294 -9.92370 -9.35369 -9.26606 -9.14762 -8.77807 -8.31440 -7.75160 -6.26694 -4.31670 1.42085 1.92291 2.14235 2.78381 2.81434 3.23582 3.31098 3.36350 3.70757 4.04595 4.12200 4.28184 4.34961 4.38171 4.53448 4.71364 4.75362 4.87845 4.91651 5.04517 5.07022 5.15079 5.19882 5.22662 5.38435 5.40075 5.51586 5.53467 5.57799 5.64014 5.82770 5.86287 6.08286 6.22448 6.44460 6.57623 6.75127 6.78979 6.85327 7.00506 7.18242 7.27332 7.39499 7.59781 7.85991 8.10277 8.42339 8.60054 8.76579 9.32913 10.84737 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.029393 B = 0.002352 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.386144 B =11900.260448 C =12100.100628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.164 3.836 4 H 0.099 0.901 5 C -0.163 4.163 6 N -0.362 5.362 7 N -0.283 5.283 8 C 0.055 3.945 9 C 0.000 4.000 10 N -0.618 5.618 11 C 0.508 3.492 12 O -0.512 6.512 13 C 0.497 3.503 14 O -0.543 6.543 15 N -0.663 5.663 16 C 0.229 3.771 17 H 0.054 0.946 18 C -0.149 4.149 19 C -0.533 4.533 20 H 0.082 0.918 21 C 0.082 3.918 22 N -0.885 5.885 23 Si 0.874 3.126 24 H -0.272 1.272 25 H -0.259 1.259 26 H -0.285 1.285 27 C 0.048 3.952 28 C -0.090 4.090 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.207 0.793 38 H 0.419 0.581 39 H 0.407 0.593 40 H 0.030 0.970 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.269 0.731 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.059 3.561 4.042 28.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.063 3.937 4 H 0.117 0.883 5 C -0.221 4.221 6 N -0.147 5.147 7 N -0.104 5.104 8 C -0.132 4.132 9 C -0.104 4.104 10 N -0.265 5.265 11 C 0.290 3.710 12 O -0.386 6.386 13 C 0.276 3.724 14 O -0.422 6.422 15 N -0.312 5.312 16 C 0.128 3.872 17 H 0.071 0.929 18 C -0.208 4.208 19 C -0.571 4.571 20 H 0.100 0.900 21 C -0.123 4.123 22 N -0.521 5.521 23 Si 0.700 3.300 24 H -0.198 1.198 25 H -0.184 1.184 26 H -0.211 1.211 27 C -0.081 4.081 28 C -0.149 4.149 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.224 0.776 38 H 0.256 0.744 39 H 0.243 0.757 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -28.615 2.953 4.877 29.177 hybrid contribution 0.515 0.614 -1.595 1.785 sum -28.099 3.567 3.283 28.514 Atomic orbital electron populations 1.21805 0.94451 1.02503 1.02137 1.21869 0.96334 0.95010 1.03841 1.21316 0.74174 0.98101 1.00136 0.88261 1.22186 1.01998 1.00981 0.96906 1.48351 1.05883 1.42745 1.17768 1.77352 0.98535 1.19661 1.14881 1.24523 0.96594 0.97913 0.94142 1.17459 0.86174 1.09243 0.97563 1.42484 1.03269 1.54232 1.26492 1.20695 0.83942 0.80341 0.85992 1.90619 1.84739 1.38149 1.25082 1.19767 0.84644 0.82087 0.85881 1.90705 1.85086 1.40862 1.25589 1.46627 1.04477 1.52323 1.27782 1.19305 0.83722 0.92567 0.91641 0.92863 1.22246 0.99911 0.97468 1.01197 1.20982 1.07190 1.29546 0.99338 0.89961 1.24939 0.94666 0.93892 0.98825 1.69869 1.12900 1.36139 1.33144 0.86900 0.77935 0.80827 0.84300 1.19764 1.18366 1.21052 1.20330 0.90447 1.02668 0.94702 1.20418 1.01623 0.99359 0.93478 0.92039 0.92484 0.91979 0.91372 0.90342 0.90924 0.92088 0.90527 0.77642 0.74383 0.75709 0.95051 0.93235 0.92231 0.92105 0.90074 0.90893 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.67 37.16 0.36 -0.33 16 2 C -0.13 -0.92 5.66 -26.73 -0.15 -1.07 16 3 C 0.16 1.21 3.11 -67.93 -0.21 1.00 16 4 H 0.10 0.52 6.68 -51.93 -0.35 0.18 16 5 C -0.16 -1.08 9.21 37.16 0.34 -0.74 16 6 N -0.36 -3.96 3.28 -50.50 -0.17 -4.12 16 7 N -0.28 -3.89 12.41 30.72 0.38 -3.51 16 8 C 0.06 0.81 10.84 -17.20 -0.19 0.62 16 9 C 0.00 0.00 6.86 -83.96 -0.58 -0.57 16 10 N -0.62 -8.64 5.45 -10.48 -0.06 -8.70 16 11 C 0.51 8.54 7.86 -11.64 -0.09 8.45 16 12 O -0.51 -9.17 13.63 5.45 0.07 -9.09 16 13 C 0.50 9.57 7.85 -11.64 -0.09 9.48 16 14 O -0.54 -11.26 16.14 5.49 0.09 -11.18 16 15 N -0.66 -13.69 5.06 -55.41 -0.28 -13.97 16 16 C 0.23 5.36 2.16 -69.09 -0.15 5.21 16 17 H 0.05 1.33 4.89 -51.93 -0.25 1.07 16 18 C -0.15 -3.17 9.44 37.16 0.35 -2.82 16 19 C -0.53 -14.19 9.05 -34.44 -0.31 -14.50 16 20 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 21 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 22 N -0.88 -25.80 13.96 55.43 0.77 -25.03 16 23 Si 0.87 20.96 26.74 -169.99 -4.55 16.41 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.26 -6.02 6.87 56.52 0.39 -5.63 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 C 0.05 0.52 6.96 -81.95 -0.57 -0.05 16 28 C -0.09 -0.62 9.76 36.00 0.35 -0.27 16 29 H 0.06 0.24 6.56 -51.93 -0.34 -0.10 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.08 0.33 6.56 -51.93 -0.34 -0.01 16 37 H 0.21 3.19 5.92 -52.48 -0.31 2.88 16 38 H 0.42 5.10 7.55 -40.82 -0.31 4.79 16 39 H 0.41 8.00 8.06 -40.82 -0.33 7.67 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.27 7.92 -51.93 -0.41 0.86 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.36 7.10 -51.93 -0.37 0.00 16 46 H 0.08 0.54 7.61 -51.93 -0.39 0.14 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -31.76 380.16 -5.82 -37.57 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.78 Total: 9.31 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -1.03 Total: 6.57 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.65 Total: -55.32 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.16 Total: -20.27 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.55 Total: 16.41 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.76 -5.82 -37.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361762660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.489 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds