Wall clock time and date at job start Tue Mar 31 2020 12:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47136 * 2 1 4 4 H 1.09003 * 109.46888 * 305.00147 * 3 2 1 5 5 C 1.53000 * 109.47100 * 64.99658 * 3 2 1 6 6 N 1.46496 * 109.47078 * 185.00292 * 3 2 1 7 7 N 1.40062 * 125.99006 * 299.99127 * 6 3 2 8 8 C 1.30820 * 108.35921 * 179.75706 * 7 6 3 9 9 C 1.40332 * 108.21849 * 0.38720 * 8 7 6 10 10 N 1.40477 * 126.12348 * 179.87698 * 9 8 7 11 11 C 1.34777 * 119.99599 * 359.68786 * 10 9 8 12 12 O 1.21403 * 120.00022 * 0.02562 * 11 10 9 13 13 C 1.49328 * 120.00292 * 180.02562 * 11 10 9 14 14 O 1.21358 * 119.99485 * 359.97438 * 13 11 10 15 15 N 1.34777 * 120.00292 * 179.97438 * 13 11 10 16 16 C 1.46493 * 120.00036 * 179.97438 * 15 13 11 17 17 H 1.09006 * 109.47194 * 325.00105 * 16 15 13 18 18 C 1.52997 * 109.47181 * 84.99862 * 16 15 13 19 19 C 1.50703 * 109.47210 * 204.99937 * 16 15 13 20 20 H 1.07994 * 119.99733 * 325.86857 * 19 16 15 21 21 C 1.37878 * 120.00066 * 145.87198 * 19 16 15 22 22 N 1.31509 * 120.00286 * 177.63982 * 21 19 16 23 23 Si 1.86806 * 119.99840 * 357.63750 * 21 19 16 24 24 H 1.48496 * 109.47212 * 274.92261 * 23 21 19 25 25 H 1.48500 * 109.46793 * 34.92601 * 23 21 19 26 26 H 1.48500 * 109.46690 * 154.92056 * 23 21 19 27 27 C 1.35227 * 125.99932 * 119.99908 * 6 3 2 28 28 C 1.50696 * 126.17710 * 0.02562 * 27 6 3 29 29 H 1.08997 * 109.47033 * 300.00466 * 1 2 3 30 30 H 1.09005 * 109.46655 * 60.00141 * 1 2 3 31 31 H 1.08997 * 109.46826 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47189 * 240.00271 * 2 1 3 33 33 H 1.08994 * 109.47086 * 119.99627 * 2 1 3 34 34 H 1.08994 * 109.47060 * 60.00524 * 5 3 2 35 35 H 1.09007 * 109.46890 * 180.02562 * 5 3 2 36 36 H 1.08999 * 109.47026 * 299.99661 * 5 3 2 37 37 H 1.08009 * 125.89252 * 180.22201 * 8 7 6 38 38 H 0.96997 * 120.00299 * 179.68848 * 10 9 8 39 39 H 0.97000 * 119.99550 * 359.97438 * 15 13 11 40 40 H 1.08996 * 109.47554 * 296.13783 * 18 16 15 41 41 H 1.09000 * 109.47220 * 56.13495 * 18 16 15 42 42 H 1.09000 * 109.47341 * 176.13400 * 18 16 15 43 43 H 0.97000 * 120.00720 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.47377 * 270.00241 * 28 27 6 45 45 H 1.09006 * 109.47081 * 29.99650 * 28 27 6 46 46 H 1.08998 * 109.47660 * 149.99811 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3073 6 7 3.5001 1.4443 -0.1204 7 7 4.4004 0.8505 0.7732 8 6 5.6147 1.0554 0.3318 9 6 5.5302 1.7966 -0.8568 10 7 6.6118 2.2259 -1.6437 11 6 7.8738 1.9344 -1.2710 12 8 8.0757 1.3005 -0.2555 13 6 9.0237 2.3913 -2.1070 14 8 8.8218 3.0246 -3.1223 15 7 10.2857 2.1002 -1.7340 16 6 11.4137 2.5479 -2.5545 17 1 11.1328 2.5154 -3.6072 18 6 11.7867 3.9811 -2.1703 19 6 12.5951 1.6418 -2.3216 20 1 12.7619 1.2123 -1.3449 21 6 13.4631 1.3612 -3.3555 22 7 14.5197 0.6082 -3.1411 23 14 13.1383 2.0508 -5.0610 24 1 12.2078 1.1516 -5.7895 25 1 12.5306 3.4005 -4.9416 26 1 14.4183 2.1485 -5.8074 27 6 4.2150 2.0195 -1.1137 28 6 3.6540 2.7726 -2.2924 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 2.0699 1.5877 2.1491 35 1 1.9982 3.1545 1.3071 36 1 0.5489 2.1254 1.3968 37 1 6.5254 0.7154 0.8026 38 1 6.4504 2.7321 -2.4552 39 1 10.4470 1.5944 -0.9222 40 1 10.9561 4.6475 -2.4028 41 1 12.0012 4.0270 -1.1026 42 1 12.6685 4.2900 -2.7317 43 1 15.1306 0.4111 -3.8683 44 1 3.4750 2.0796 -3.1145 45 1 2.7154 3.2475 -2.0068 46 1 4.3657 3.5352 -2.6085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361762660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:53 Heat of formation + Delta-G solvation = -26.839623 kcal Electronic energy + Delta-G solvation = -26978.921090 eV Core-core repulsion = 23097.248305 eV Total energy + Delta-G solvation = -3881.672785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.69358 -41.47641 -39.62333 -37.49253 -37.00443 -35.76140 -34.38529 -33.47440 -31.78805 -31.55535 -29.58023 -28.04870 -27.35000 -26.09359 -25.41940 -23.52880 -22.60310 -21.47481 -21.22790 -20.67011 -19.64671 -18.52689 -18.21943 -17.49833 -17.08404 -16.89288 -16.83209 -16.31968 -15.90389 -15.85885 -15.21759 -15.12664 -14.93998 -14.54055 -14.47862 -14.28275 -13.95088 -13.89740 -13.52755 -13.33053 -13.30677 -13.10890 -13.07481 -12.84971 -12.74711 -12.61456 -12.57006 -12.35159 -12.18833 -11.95918 -11.84934 -11.69330 -11.55474 -11.25864 -10.88326 -10.62428 -10.25027 -10.03479 -8.78000 -8.38324 -6.47366 0.19110 0.83070 1.16792 1.34319 1.37079 1.47474 1.60169 1.66517 2.28510 2.30167 2.71687 3.04654 3.42204 3.51448 3.63513 3.82839 3.89732 4.07370 4.13417 4.34571 4.39154 4.41143 4.47349 4.61042 4.67594 4.72120 4.73746 4.77277 4.85777 4.92366 4.97670 5.02612 5.04490 5.08551 5.11147 5.26822 5.29533 5.40569 5.43295 5.54156 5.66485 5.91653 6.03719 6.15074 6.51235 6.57921 6.66189 6.82616 7.01579 7.21716 8.76630 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.029393 B = 0.002352 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.386144 B =11900.260448 C =12100.100628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.153 3.847 4 H 0.133 0.867 5 C -0.159 4.159 6 N -0.354 5.354 7 N -0.306 5.306 8 C 0.035 3.965 9 C -0.037 4.037 10 N -0.597 5.597 11 C 0.510 3.490 12 O -0.529 6.529 13 C 0.503 3.497 14 O -0.554 6.554 15 N -0.670 5.670 16 C 0.233 3.767 17 H 0.044 0.956 18 C -0.144 4.144 19 C -0.533 4.533 20 H 0.052 0.948 21 C 0.030 3.970 22 N -0.930 5.930 23 Si 0.932 3.068 24 H -0.272 1.272 25 H -0.244 1.244 26 H -0.278 1.278 27 C 0.073 3.927 28 C -0.094 4.094 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.189 0.811 38 H 0.429 0.571 39 H 0.410 0.590 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.272 0.728 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.648 5.342 2.502 32.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.151 0.849 5 C -0.216 4.216 6 N -0.139 5.139 7 N -0.128 5.128 8 C -0.150 4.150 9 C -0.141 4.141 10 N -0.244 5.244 11 C 0.292 3.708 12 O -0.405 6.405 13 C 0.283 3.717 14 O -0.434 6.434 15 N -0.320 5.320 16 C 0.131 3.869 17 H 0.062 0.938 18 C -0.203 4.203 19 C -0.571 4.571 20 H 0.070 0.930 21 C -0.171 4.171 22 N -0.568 5.568 23 Si 0.755 3.245 24 H -0.197 1.197 25 H -0.168 1.168 26 H -0.203 1.203 27 C -0.058 4.058 28 C -0.152 4.152 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.206 0.794 38 H 0.268 0.732 39 H 0.246 0.754 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -32.268 4.744 3.353 32.786 hybrid contribution 1.429 0.028 -1.028 1.760 sum -30.839 4.773 2.325 31.292 Atomic orbital electron populations 1.21784 0.92193 1.02988 1.03385 1.21815 0.98178 0.94383 1.02262 1.21805 0.72068 0.98888 1.01893 0.84925 1.22169 1.03711 1.00178 0.95572 1.48812 1.07023 1.41187 1.16869 1.77305 0.98675 1.20739 1.16085 1.24350 0.96587 0.98980 0.95117 1.17602 0.87034 1.11432 0.98025 1.42225 1.02386 1.53248 1.26511 1.20113 0.84227 0.80866 0.85599 1.90636 1.84955 1.39266 1.25688 1.20027 0.84685 0.81318 0.85712 1.90685 1.85345 1.41260 1.26144 1.46381 1.04729 1.53053 1.27796 1.19107 0.83234 0.93060 0.91542 0.93834 1.22148 1.00349 0.96083 1.01690 1.21152 1.08386 1.29545 0.98050 0.92992 1.25713 0.94407 0.94335 1.02647 1.69986 1.14196 1.38143 1.34467 0.85980 0.78060 0.80756 0.79699 1.19717 1.16790 1.20303 1.20984 0.89457 1.00488 0.94883 1.20674 1.02953 0.99563 0.91979 0.91104 0.90841 0.91996 0.92403 0.92556 0.93125 0.92371 0.87647 0.79421 0.73221 0.75367 0.93574 0.92514 0.92370 0.91899 0.88344 0.88084 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.67 71.98 0.70 -0.20 16 2 C -0.13 -1.54 5.66 30.60 0.17 -1.37 16 3 C 0.15 1.82 3.11 44.99 0.14 1.96 16 4 H 0.13 0.74 6.68 -2.39 -0.02 0.73 16 5 C -0.16 -1.72 9.21 71.98 0.66 -1.06 16 6 N -0.35 -7.14 3.28 -313.67 -1.03 -8.17 16 7 N -0.31 -8.47 12.41 -56.72 -0.70 -9.18 16 8 C 0.04 1.07 10.84 85.35 0.93 2.00 16 9 C -0.04 -0.98 6.86 37.71 0.26 -0.72 16 10 N -0.60 -16.08 5.45 -305.42 -1.67 -17.75 16 11 C 0.51 17.11 7.86 87.23 0.69 17.79 16 12 O -0.53 -19.47 13.63 -3.41 -0.05 -19.51 16 13 C 0.50 19.06 7.85 87.23 0.68 19.75 16 14 O -0.55 -22.21 16.14 -3.27 -0.05 -22.26 16 15 N -0.67 -27.76 5.06 -447.57 -2.27 -30.02 16 16 C 0.23 10.82 2.16 44.25 0.10 10.92 16 17 H 0.04 2.12 4.89 -2.38 -0.01 2.11 16 18 C -0.14 -5.94 9.44 71.98 0.68 -5.26 16 19 C -0.53 -28.95 9.05 25.60 0.23 -28.72 16 20 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 21 C 0.03 1.66 5.47 84.66 0.46 2.12 16 22 N -0.93 -55.49 13.96 21.45 0.30 -55.19 16 23 Si 0.93 42.99 26.74 68.60 1.83 44.82 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.24 -10.61 6.87 99.48 0.68 -9.92 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 27 C 0.07 1.42 6.96 41.48 0.29 1.71 16 28 C -0.09 -0.89 9.76 71.23 0.70 -0.20 16 29 H 0.07 0.31 6.56 -2.39 -0.02 0.30 16 30 H 0.07 0.24 8.14 -2.38 -0.02 0.22 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.11 0.53 6.56 -2.39 -0.02 0.52 16 37 H 0.19 6.24 5.92 -2.91 -0.02 6.22 16 38 H 0.43 9.60 7.55 -92.71 -0.70 8.90 16 39 H 0.41 16.53 8.06 -92.71 -0.75 15.78 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.06 2.39 7.92 -2.39 -0.02 2.37 16 43 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.10 0.45 7.10 -2.38 -0.02 0.43 16 46 H 0.09 0.81 7.61 -2.39 -0.02 0.79 16 Total: -1.00 -70.55 380.16 2.60 -67.95 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: -0.45 Total: 30.59 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 6.68 Total: 18.72 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -5.37 Total: -120.31 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.10 Total: -41.77 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.83 Total: 44.82 kcal Total: -70.55 2.60 -67.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361762660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.114 kcal (2) G-P(sol) polarization free energy of solvation -70.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds