Wall clock time and date at job start Tue Mar 31 2020 12:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46956 * 2 1 4 4 H 1.09004 * 109.47419 * 55.00075 * 3 2 1 5 5 C 1.53001 * 109.47302 * 294.99909 * 3 2 1 6 6 N 1.46504 * 109.47007 * 174.99955 * 3 2 1 7 7 N 1.40052 * 125.99596 * 59.97357 * 6 3 2 8 8 C 1.30825 * 108.36942 * 180.02562 * 7 6 3 9 9 C 1.40336 * 108.20703 * 0.02562 * 8 7 6 10 10 N 1.40482 * 126.11534 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99815 * 0.02562 * 10 9 8 12 12 O 1.21398 * 120.00389 * 0.02562 * 11 10 9 13 13 C 1.49329 * 119.99825 * 179.97438 * 11 10 9 14 14 O 1.21361 * 119.99999 * 0.02562 * 13 11 10 15 15 N 1.34775 * 119.99825 * 180.02562 * 13 11 10 16 16 C 1.46502 * 120.00053 * 180.02562 * 15 13 11 17 17 H 1.08996 * 109.47077 * 34.99783 * 16 15 13 18 18 C 1.53008 * 109.47016 * 275.00255 * 16 15 13 19 19 C 1.50695 * 109.47337 * 155.00261 * 16 15 13 20 20 H 1.07998 * 120.00418 * 5.62270 * 19 16 15 21 21 C 1.37879 * 120.00201 * 185.62926 * 19 16 15 22 22 N 1.31514 * 120.00393 * 197.18198 * 21 19 16 23 23 Si 1.86804 * 119.99786 * 17.45333 * 21 19 16 24 24 H 1.48502 * 109.47029 * 179.72709 * 23 21 19 25 25 H 1.48503 * 109.46948 * 299.72609 * 23 21 19 26 26 H 1.48492 * 109.47033 * 59.72641 * 23 21 19 27 27 C 1.35228 * 125.99208 * 240.30722 * 6 3 2 28 28 C 1.50698 * 126.18064 * 0.02562 * 27 6 3 29 29 H 1.08997 * 109.46988 * 59.99850 * 1 2 3 30 30 H 1.08997 * 109.46915 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47049 * 299.99884 * 1 2 3 32 32 H 1.08997 * 109.47507 * 240.00118 * 2 1 3 33 33 H 1.09002 * 109.47249 * 119.99785 * 2 1 3 34 34 H 1.09001 * 109.46748 * 60.00158 * 5 3 2 35 35 H 1.08994 * 109.47156 * 180.02562 * 5 3 2 36 36 H 1.09004 * 109.47019 * 300.00411 * 5 3 2 37 37 H 1.07999 * 125.89767 * 180.02562 * 8 7 6 38 38 H 0.96994 * 119.99994 * 180.02562 * 10 9 8 39 39 H 0.96996 * 120.00288 * 0.02562 * 15 13 11 40 40 H 1.09002 * 109.47065 * 186.34089 * 18 16 15 41 41 H 1.09000 * 109.46665 * 306.33574 * 18 16 15 42 42 H 1.08994 * 109.46957 * 66.33318 * 18 16 15 43 43 H 0.97001 * 119.99221 * 355.17115 * 22 21 19 44 44 H 1.08999 * 109.46795 * 270.16653 * 28 27 6 45 45 H 1.08992 * 109.47096 * 30.17381 * 28 27 6 46 46 H 1.09005 * 109.46897 * 150.17392 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 7 3.5001 1.4443 0.1204 7 7 4.4003 0.8500 -0.7728 8 6 5.6150 1.0592 -0.3341 9 6 5.5301 1.7956 0.8575 10 7 6.6118 2.2256 1.6440 11 6 7.8738 1.9348 1.2708 12 8 8.0759 1.3017 0.2549 13 6 9.0236 2.3925 2.1065 14 8 8.8217 3.0258 3.1219 15 7 10.2857 2.1021 1.7331 16 6 11.4138 2.5506 2.5532 17 1 11.1332 2.5180 3.6059 18 6 11.7857 3.9841 2.1687 19 6 12.5956 1.6452 2.3200 20 1 12.5452 0.8751 1.5645 21 6 13.7414 1.7999 3.0712 22 7 14.8717 1.2643 2.6646 23 14 13.6867 2.7639 4.6703 24 1 15.0380 2.7780 5.2863 25 1 13.2542 4.1573 4.3938 26 1 12.7247 2.1227 5.6021 27 6 4.2146 2.0146 1.1168 28 6 3.6532 2.7601 2.3000 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.5489 2.1253 -1.3969 35 1 1.9989 3.1541 -1.3075 36 1 2.0698 1.5875 -2.1492 37 1 6.5258 0.7231 -0.8073 38 1 6.4504 2.7318 2.4555 39 1 10.4471 1.5963 0.9214 40 1 12.6929 4.2781 2.6967 41 1 11.9571 4.0390 1.0937 42 1 10.9723 4.6562 2.4417 43 1 14.8852 0.7023 1.8741 44 1 3.5576 3.8171 2.0514 45 1 2.6729 2.3560 2.5523 46 1 4.3233 2.6466 3.1522 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361762661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:58 Heat of formation + Delta-G solvation = -3.653293 kcal Electronic energy + Delta-G solvation = -26957.757762 eV Core-core repulsion = 23077.090412 eV Total energy + Delta-G solvation = -3880.667350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72699 -40.14272 -38.21750 -36.78521 -35.43744 -34.54456 -32.72539 -32.44379 -30.93077 -29.86987 -28.88037 -27.18886 -25.30877 -24.94812 -24.25796 -22.61822 -21.24569 -20.26738 -19.93329 -19.47503 -18.38142 -17.28300 -17.14948 -16.36072 -15.89470 -15.81198 -15.35742 -15.26886 -14.98444 -14.38296 -14.04278 -13.90408 -13.55154 -13.39277 -13.32640 -13.18631 -12.93937 -12.75119 -12.69952 -12.55671 -12.27963 -12.23609 -12.03274 -11.82537 -11.53270 -11.49463 -11.31343 -11.17989 -10.82170 -10.75766 -10.52924 -10.08517 -9.83319 -9.37972 -9.21532 -9.13391 -8.41338 -8.35544 -7.78527 -6.62111 -4.25692 1.38396 1.88578 2.11395 2.74869 2.78112 3.35195 3.41670 3.56690 3.65996 4.02575 4.09738 4.32452 4.35684 4.38677 4.51859 4.69491 4.73275 4.85906 4.92514 5.03746 5.05796 5.13140 5.13878 5.21189 5.35458 5.37829 5.49697 5.51480 5.55550 5.62022 5.81109 5.83988 6.04643 6.29495 6.45705 6.56969 6.71881 6.82024 6.82478 7.00713 7.22509 7.24238 7.51056 7.58983 7.90307 8.20121 8.28530 8.50650 8.77538 9.43540 10.79242 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.033251 B = 0.002292 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.870562 B =12216.069753 C =12543.262573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.164 3.836 4 H 0.100 0.900 5 C -0.162 4.162 6 N -0.362 5.362 7 N -0.283 5.283 8 C 0.055 3.945 9 C -0.001 4.001 10 N -0.617 5.617 11 C 0.508 3.492 12 O -0.513 6.513 13 C 0.498 3.502 14 O -0.540 6.540 15 N -0.661 5.661 16 C 0.239 3.761 17 H 0.046 0.954 18 C -0.162 4.162 19 C -0.620 4.620 20 H 0.065 0.935 21 C 0.039 3.961 22 N -0.894 5.894 23 Si 1.042 2.958 24 H -0.282 1.282 25 H -0.271 1.271 26 H -0.279 1.279 27 C 0.049 3.951 28 C -0.091 4.091 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.207 0.793 38 H 0.419 0.581 39 H 0.407 0.593 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.031 0.969 43 H 0.270 0.730 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.194 2.481 -3.390 29.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.063 3.937 4 H 0.118 0.882 5 C -0.220 4.220 6 N -0.147 5.147 7 N -0.104 5.104 8 C -0.132 4.132 9 C -0.105 4.105 10 N -0.264 5.264 11 C 0.291 3.709 12 O -0.387 6.387 13 C 0.277 3.723 14 O -0.419 6.419 15 N -0.310 5.310 16 C 0.137 3.863 17 H 0.064 0.936 18 C -0.221 4.221 19 C -0.658 4.658 20 H 0.083 0.917 21 C -0.168 4.168 22 N -0.527 5.527 23 Si 0.870 3.130 24 H -0.208 1.208 25 H -0.197 1.197 26 H -0.205 1.205 27 C -0.081 4.081 28 C -0.149 4.149 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.223 0.777 38 H 0.257 0.743 39 H 0.242 0.758 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -28.965 2.517 -3.078 29.237 hybrid contribution -0.411 -0.308 -0.669 0.844 sum -29.376 2.209 -3.748 29.697 Atomic orbital electron populations 1.21804 0.94426 1.02514 1.02152 1.21878 0.96366 0.95035 1.03841 1.21325 0.74132 0.98088 1.00193 0.88230 1.22178 1.02006 1.00991 0.96837 1.48360 1.05916 1.42774 1.17654 1.77350 0.98516 1.19550 1.14996 1.24515 0.96585 0.97955 0.94142 1.17456 0.86166 1.09469 0.97423 1.42466 1.03234 1.54216 1.26465 1.20638 0.83959 0.80339 0.85973 1.90618 1.84751 1.38259 1.25072 1.19705 0.84578 0.82120 0.85874 1.90709 1.85041 1.40655 1.25483 1.46225 1.04575 1.52514 1.27708 1.19221 0.83354 0.92559 0.91197 0.93648 1.22519 1.00476 0.97685 1.01376 1.22061 0.99286 1.20081 1.24376 0.91713 1.25710 0.91198 0.98102 1.01774 1.70870 1.25436 1.30175 1.26199 0.84077 0.76330 0.76827 0.75784 1.20795 1.19694 1.20543 1.20340 0.90431 1.02722 0.94567 1.20423 1.01599 0.99456 0.93425 0.92031 0.91972 0.92472 0.90342 0.91381 0.90499 0.92067 0.90945 0.77692 0.74340 0.75762 0.91496 0.93373 0.94991 0.91952 0.90072 0.90846 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.67 37.16 0.36 -0.31 16 2 C -0.13 -0.90 5.66 -26.73 -0.15 -1.06 16 3 C 0.16 1.19 3.11 -67.93 -0.21 0.98 16 4 H 0.10 0.51 6.69 -51.93 -0.35 0.16 16 5 C -0.16 -1.06 9.21 37.16 0.34 -0.72 16 6 N -0.36 -3.91 3.28 -50.49 -0.17 -4.08 16 7 N -0.28 -3.86 12.41 30.72 0.38 -3.48 16 8 C 0.05 0.80 10.84 -17.19 -0.19 0.62 16 9 C 0.00 -0.01 6.86 -83.95 -0.58 -0.58 16 10 N -0.62 -8.55 5.45 -10.48 -0.06 -8.61 16 11 C 0.51 8.53 7.86 -11.64 -0.09 8.44 16 12 O -0.51 -9.19 13.63 5.45 0.07 -9.11 16 13 C 0.50 9.59 7.85 -11.64 -0.09 9.50 16 14 O -0.54 -11.12 16.14 5.49 0.09 -11.03 16 15 N -0.66 -13.82 5.06 -55.40 -0.28 -14.10 16 16 C 0.24 5.68 2.14 -69.08 -0.15 5.53 16 17 H 0.05 1.14 6.23 -51.93 -0.32 0.81 16 18 C -0.16 -3.58 9.16 37.16 0.34 -3.24 16 19 C -0.62 -16.71 9.00 -34.44 -0.31 -17.02 16 20 H 0.06 1.84 7.96 -52.49 -0.42 1.43 16 21 C 0.04 1.09 5.29 -17.82 -0.09 1.00 16 22 N -0.89 -26.43 13.70 55.43 0.76 -25.67 16 23 Si 1.04 24.49 26.29 -169.99 -4.47 20.03 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.27 -5.89 5.76 56.52 0.33 -5.57 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.05 0.52 6.96 -81.95 -0.57 -0.05 16 28 C -0.09 -0.61 9.76 36.00 0.35 -0.26 16 29 H 0.06 0.23 6.56 -51.93 -0.34 -0.11 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.33 6.56 -51.93 -0.34 -0.02 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.21 3.17 5.92 -52.49 -0.31 2.86 16 38 H 0.42 5.03 7.55 -40.82 -0.31 4.72 16 39 H 0.41 8.15 7.99 -40.82 -0.33 7.83 16 40 H 0.07 1.50 4.88 -51.93 -0.25 1.25 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.27 7.94 8.73 -40.82 -0.36 7.58 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.36 7.12 -51.93 -0.37 -0.01 16 46 H 0.08 0.54 7.61 -51.93 -0.40 0.14 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -31.89 376.38 -5.80 -37.69 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -6.77 Total: 9.88 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.04 Total: 2.82 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.64 Total: -55.94 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.16 Total: -20.14 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -4.47 Total: 20.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.89 -5.80 -37.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361762661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.033 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds