Wall clock time and date at job start Tue Mar 31 2020 12:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46956 * 2 1 4 4 H 1.09004 * 109.47419 * 55.00075 * 3 2 1 5 5 C 1.53001 * 109.47302 * 294.99909 * 3 2 1 6 6 N 1.46504 * 109.47007 * 174.99955 * 3 2 1 7 7 N 1.40052 * 125.99596 * 59.97357 * 6 3 2 8 8 C 1.30825 * 108.36942 * 180.02562 * 7 6 3 9 9 C 1.40336 * 108.20703 * 0.02562 * 8 7 6 10 10 N 1.40482 * 126.11534 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99815 * 0.02562 * 10 9 8 12 12 O 1.21398 * 120.00389 * 0.02562 * 11 10 9 13 13 C 1.49329 * 119.99825 * 179.97438 * 11 10 9 14 14 O 1.21361 * 119.99999 * 0.02562 * 13 11 10 15 15 N 1.34775 * 119.99825 * 180.02562 * 13 11 10 16 16 C 1.46502 * 120.00053 * 180.02562 * 15 13 11 17 17 H 1.08996 * 109.47077 * 34.99783 * 16 15 13 18 18 C 1.53008 * 109.47016 * 275.00255 * 16 15 13 19 19 C 1.50695 * 109.47337 * 155.00261 * 16 15 13 20 20 H 1.07998 * 120.00418 * 5.62270 * 19 16 15 21 21 C 1.37879 * 120.00201 * 185.62926 * 19 16 15 22 22 N 1.31514 * 120.00393 * 197.18198 * 21 19 16 23 23 Si 1.86804 * 119.99786 * 17.45333 * 21 19 16 24 24 H 1.48502 * 109.47029 * 179.72709 * 23 21 19 25 25 H 1.48503 * 109.46948 * 299.72609 * 23 21 19 26 26 H 1.48492 * 109.47033 * 59.72641 * 23 21 19 27 27 C 1.35228 * 125.99208 * 240.30722 * 6 3 2 28 28 C 1.50698 * 126.18064 * 0.02562 * 27 6 3 29 29 H 1.08997 * 109.46988 * 59.99850 * 1 2 3 30 30 H 1.08997 * 109.46915 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47049 * 299.99884 * 1 2 3 32 32 H 1.08997 * 109.47507 * 240.00118 * 2 1 3 33 33 H 1.09002 * 109.47249 * 119.99785 * 2 1 3 34 34 H 1.09001 * 109.46748 * 60.00158 * 5 3 2 35 35 H 1.08994 * 109.47156 * 180.02562 * 5 3 2 36 36 H 1.09004 * 109.47019 * 300.00411 * 5 3 2 37 37 H 1.07999 * 125.89767 * 180.02562 * 8 7 6 38 38 H 0.96994 * 119.99994 * 180.02562 * 10 9 8 39 39 H 0.96996 * 120.00288 * 0.02562 * 15 13 11 40 40 H 1.09002 * 109.47065 * 186.34089 * 18 16 15 41 41 H 1.09000 * 109.46665 * 306.33574 * 18 16 15 42 42 H 1.08994 * 109.46957 * 66.33318 * 18 16 15 43 43 H 0.97001 * 119.99221 * 355.17115 * 22 21 19 44 44 H 1.08999 * 109.46795 * 270.16653 * 28 27 6 45 45 H 1.08992 * 109.47096 * 30.17381 * 28 27 6 46 46 H 1.09005 * 109.46897 * 150.17392 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 7 3.5001 1.4443 0.1204 7 7 4.4003 0.8500 -0.7728 8 6 5.6150 1.0592 -0.3341 9 6 5.5301 1.7956 0.8575 10 7 6.6118 2.2256 1.6440 11 6 7.8738 1.9348 1.2708 12 8 8.0759 1.3017 0.2549 13 6 9.0236 2.3925 2.1065 14 8 8.8217 3.0258 3.1219 15 7 10.2857 2.1021 1.7331 16 6 11.4138 2.5506 2.5532 17 1 11.1332 2.5180 3.6059 18 6 11.7857 3.9841 2.1687 19 6 12.5956 1.6452 2.3200 20 1 12.5452 0.8751 1.5645 21 6 13.7414 1.7999 3.0712 22 7 14.8717 1.2643 2.6646 23 14 13.6867 2.7639 4.6703 24 1 15.0380 2.7780 5.2863 25 1 13.2542 4.1573 4.3938 26 1 12.7247 2.1227 5.6021 27 6 4.2146 2.0146 1.1168 28 6 3.6532 2.7601 2.3000 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.5489 2.1253 -1.3969 35 1 1.9989 3.1541 -1.3075 36 1 2.0698 1.5875 -2.1492 37 1 6.5258 0.7231 -0.8073 38 1 6.4504 2.7318 2.4555 39 1 10.4471 1.5963 0.9214 40 1 12.6929 4.2781 2.6967 41 1 11.9571 4.0390 1.0937 42 1 10.9723 4.6562 2.4417 43 1 14.8852 0.7023 1.8741 44 1 3.5576 3.8171 2.0514 45 1 2.6729 2.3560 2.5523 46 1 4.3233 2.6466 3.1522 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361762661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:57 Heat of formation + Delta-G solvation = -26.829659 kcal Electronic energy + Delta-G solvation = -26958.762765 eV Core-core repulsion = 23077.090412 eV Total energy + Delta-G solvation = -3881.672353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.71838 -41.51765 -39.66492 -37.51346 -37.08598 -35.81456 -34.46098 -33.48716 -31.74792 -31.55078 -29.59328 -28.07090 -26.95016 -26.08567 -25.43037 -23.54432 -22.60860 -21.47082 -21.25341 -20.73339 -19.85925 -18.93008 -18.22379 -17.56132 -17.09363 -16.93921 -16.63685 -16.32631 -15.92630 -15.63632 -15.24183 -15.08196 -15.00476 -14.65566 -14.52940 -14.23443 -13.96138 -13.85222 -13.59104 -13.55629 -13.38828 -13.35102 -13.10768 -12.75093 -12.64762 -12.57813 -12.40653 -12.21468 -11.97967 -11.95434 -11.70971 -11.64076 -11.56965 -11.17281 -10.69526 -10.47859 -10.26720 -10.14304 -8.83244 -8.80151 -6.47180 0.15107 0.80896 1.14483 1.48617 1.54717 1.57116 1.63665 1.74071 2.26139 2.44330 2.72945 3.00684 3.40153 3.45189 3.61902 3.81388 3.87935 4.06567 4.11752 4.32460 4.39950 4.44161 4.46268 4.60257 4.67348 4.69706 4.71769 4.72660 4.83582 4.90410 4.96667 5.01660 5.03692 5.07334 5.10324 5.28218 5.32203 5.39896 5.44800 5.55219 5.64131 5.95474 5.99015 6.05308 6.43408 6.48511 6.60802 6.78862 6.97848 7.30340 8.57410 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.033251 B = 0.002292 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.870562 B =12216.069753 C =12543.262573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.153 3.847 4 H 0.134 0.866 5 C -0.158 4.158 6 N -0.354 5.354 7 N -0.306 5.306 8 C 0.035 3.965 9 C -0.038 4.038 10 N -0.595 5.595 11 C 0.511 3.489 12 O -0.531 6.531 13 C 0.504 3.496 14 O -0.550 6.550 15 N -0.670 5.670 16 C 0.242 3.758 17 H 0.040 0.960 18 C -0.156 4.156 19 C -0.620 4.620 20 H 0.035 0.965 21 C -0.007 4.007 22 N -0.924 5.924 23 Si 1.076 2.924 24 H -0.283 1.283 25 H -0.240 1.240 26 H -0.268 1.268 27 C 0.074 3.926 28 C -0.094 4.094 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.188 0.812 38 H 0.429 0.571 39 H 0.409 0.591 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.257 0.743 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.866 4.439 -1.768 33.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.053 3.947 4 H 0.151 0.849 5 C -0.216 4.216 6 N -0.138 5.138 7 N -0.128 5.128 8 C -0.151 4.151 9 C -0.142 4.142 10 N -0.242 5.242 11 C 0.292 3.708 12 O -0.407 6.407 13 C 0.284 3.716 14 O -0.429 6.429 15 N -0.319 5.319 16 C 0.138 3.862 17 H 0.057 0.943 18 C -0.214 4.214 19 C -0.658 4.658 20 H 0.054 0.946 21 C -0.208 4.208 22 N -0.559 5.559 23 Si 0.897 3.103 24 H -0.209 1.209 25 H -0.164 1.164 26 H -0.193 1.193 27 C -0.057 4.057 28 C -0.152 4.152 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.205 0.795 38 H 0.269 0.731 39 H 0.244 0.756 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -32.713 4.477 -1.480 33.051 hybrid contribution 0.515 -0.984 -1.241 1.665 sum -32.198 3.493 -2.721 32.501 Atomic orbital electron populations 1.21783 0.92170 1.02996 1.03404 1.21825 0.98205 0.94401 1.02271 1.21815 0.72024 0.98874 1.01945 0.84862 1.22161 1.03717 1.00176 0.95520 1.48822 1.07053 1.41197 1.16772 1.77303 0.98655 1.20624 1.16224 1.24336 0.96567 0.99044 0.95136 1.17600 0.87034 1.11695 0.97853 1.42207 1.02322 1.53187 1.26489 1.20069 0.84252 0.80865 0.85581 1.90635 1.84974 1.39419 1.25720 1.19989 0.84571 0.81325 0.85727 1.90689 1.85278 1.40967 1.25962 1.46073 1.04858 1.53299 1.27708 1.18995 0.83019 0.92834 0.91315 0.94255 1.22407 1.00903 0.96599 1.01521 1.22220 1.00738 1.19701 1.23103 0.94645 1.27030 0.90816 0.98627 1.04310 1.70988 1.26719 1.31802 1.26357 0.83673 0.76641 0.77547 0.72421 1.20916 1.16386 1.19330 1.20999 0.89423 1.00485 0.94774 1.20681 1.02915 1.00044 0.91545 0.91123 0.91994 0.90795 0.92584 0.92369 0.87621 0.92375 0.93163 0.79519 0.73143 0.75574 0.91804 0.93163 0.93202 0.93417 0.88093 0.88148 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.67 71.98 0.70 -0.16 16 2 C -0.13 -1.52 5.66 30.60 0.17 -1.34 16 3 C 0.15 1.79 3.11 44.99 0.14 1.93 16 4 H 0.13 0.71 6.69 -2.38 -0.02 0.69 16 5 C -0.16 -1.70 9.21 71.98 0.66 -1.03 16 6 N -0.35 -7.05 3.28 -313.65 -1.03 -8.08 16 7 N -0.31 -8.43 12.41 -56.72 -0.70 -9.13 16 8 C 0.03 1.05 10.84 85.35 0.93 1.98 16 9 C -0.04 -0.99 6.86 37.71 0.26 -0.73 16 10 N -0.60 -15.88 5.45 -305.42 -1.67 -17.54 16 11 C 0.51 17.07 7.86 87.23 0.69 17.76 16 12 O -0.53 -19.59 13.63 -3.40 -0.05 -19.63 16 13 C 0.50 19.08 7.85 87.23 0.68 19.77 16 14 O -0.55 -21.78 16.14 -3.28 -0.05 -21.83 16 15 N -0.67 -28.08 5.06 -447.55 -2.27 -30.34 16 16 C 0.24 11.37 2.14 44.25 0.09 11.46 16 17 H 0.04 1.92 6.23 -2.39 -0.01 1.90 16 18 C -0.16 -6.64 9.16 71.98 0.66 -5.98 16 19 C -0.62 -34.00 9.00 25.60 0.23 -33.77 16 20 H 0.04 2.10 7.96 -2.91 -0.02 2.08 16 21 C -0.01 -0.41 5.29 84.66 0.45 0.04 16 22 N -0.92 -55.96 13.70 21.45 0.29 -55.66 16 23 Si 1.08 48.49 26.29 68.60 1.80 50.29 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.24 -9.57 5.76 99.48 0.57 -8.99 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 27 C 0.07 1.43 6.96 41.48 0.29 1.71 16 28 C -0.09 -0.86 9.76 71.24 0.70 -0.17 16 29 H 0.07 0.30 6.56 -2.39 -0.02 0.29 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.11 0.52 6.56 -2.39 -0.02 0.51 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.19 6.20 5.92 -2.91 -0.02 6.19 16 38 H 0.43 9.44 7.55 -92.71 -0.70 8.74 16 39 H 0.41 16.82 7.99 -92.71 -0.74 16.08 16 40 H 0.06 2.74 4.88 -2.39 -0.01 2.73 16 41 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.26 15.72 8.73 -92.71 -0.81 14.92 16 44 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.10 0.43 7.12 -2.39 -0.02 0.42 16 46 H 0.09 0.79 7.61 -2.38 -0.02 0.77 16 Total: -1.00 -71.19 376.38 2.39 -68.80 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: -0.59 Total: 31.67 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 6.64 Total: 11.46 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -5.37 Total: -120.76 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -0.10 Total: -41.47 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 1.80 Total: 50.29 kcal Total: -71.19 2.39 -68.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361762661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.974 kcal (2) G-P(sol) polarization free energy of solvation -71.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds