Wall clock time and date at job start Tue Mar 31 2020 12:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46938 * 2 1 4 4 H 1.09000 * 109.47421 * 305.00157 * 3 2 1 5 5 C 1.53000 * 109.47242 * 65.00288 * 3 2 1 6 6 N 1.46502 * 109.46865 * 184.99606 * 3 2 1 7 7 N 1.40052 * 125.99965 * 299.96129 * 6 3 2 8 8 C 1.30818 * 108.36935 * 180.02562 * 7 6 3 9 9 C 1.40341 * 108.21072 * 359.97438 * 8 7 6 10 10 N 1.40477 * 126.11463 * 180.02562 * 9 8 7 11 11 C 1.34773 * 120.00232 * 0.02562 * 10 9 8 12 12 O 1.21402 * 119.99966 * 359.97438 * 11 10 9 13 13 C 1.49323 * 119.99878 * 180.02562 * 11 10 9 14 14 O 1.21360 * 120.00248 * 0.02562 * 13 11 10 15 15 N 1.34782 * 119.99790 * 179.97438 * 13 11 10 16 16 C 1.46499 * 119.99717 * 180.02562 * 15 13 11 17 17 C 1.53001 * 109.46854 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.47368 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99745 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00683 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99678 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00300 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46862 * 90.00913 * 22 20 18 24 24 H 1.48505 * 109.47199 * 210.00294 * 22 20 18 25 25 H 1.48499 * 109.47269 * 330.00400 * 22 20 18 26 26 C 1.35225 * 125.98939 * 120.00461 * 6 3 2 27 27 C 1.50697 * 126.18363 * 359.69748 * 26 6 3 28 28 H 1.09004 * 109.46796 * 59.99792 * 1 2 3 29 29 H 1.08994 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46872 * 300.00083 * 1 2 3 31 31 H 1.08996 * 109.47043 * 240.00187 * 2 1 3 32 32 H 1.08996 * 109.46474 * 120.00185 * 2 1 3 33 33 H 1.08997 * 109.47838 * 59.99230 * 5 3 2 34 34 H 1.09002 * 109.47385 * 179.97438 * 5 3 2 35 35 H 1.09005 * 109.47041 * 299.99723 * 5 3 2 36 36 H 1.07997 * 125.89454 * 180.02562 * 8 7 6 37 37 H 0.97007 * 119.99871 * 179.97438 * 10 9 8 38 38 H 0.96993 * 119.99947 * 0.02562 * 15 13 11 39 39 H 1.09006 * 109.47196 * 299.99390 * 16 15 13 40 40 H 1.08993 * 109.47600 * 60.00294 * 16 15 13 41 41 H 1.08997 * 109.47215 * 299.99336 * 17 16 15 42 42 H 1.08997 * 109.47527 * 59.99615 * 17 16 15 43 43 H 0.96991 * 120.00409 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.47283 * 90.00266 * 27 26 6 45 45 H 1.08998 * 109.47716 * 210.00425 * 27 26 6 46 46 H 1.09004 * 109.46987 * 330.00566 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 7 3.5001 1.4442 -0.1203 7 7 4.4004 0.8511 0.7736 8 6 5.6150 1.0608 0.3353 9 6 5.5302 1.7964 -0.8568 10 7 6.6119 2.2258 -1.6435 11 6 7.8739 1.9343 -1.2708 12 8 8.0758 1.3010 -0.2550 13 6 9.0237 2.3913 -2.1069 14 8 8.8218 3.0255 -3.1216 15 7 10.2857 2.1002 -1.7339 16 6 11.4138 2.5490 -2.5538 17 6 12.7248 2.0898 -1.9125 18 6 13.8853 2.5509 -2.7562 19 1 13.7057 3.1154 -3.6592 20 6 15.1763 2.2531 -2.3748 21 7 15.3951 1.5661 -1.2748 22 14 16.6147 2.8252 -3.4202 23 1 17.0544 4.1684 -2.9644 24 1 17.7386 1.8641 -3.2845 25 1 16.1947 2.8980 -4.8427 26 6 4.2149 2.0196 -1.1136 27 6 3.6537 2.7667 -2.2958 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0698 1.5875 2.1492 34 1 1.9990 3.1541 1.3076 35 1 0.5490 2.1252 1.3970 36 1 6.5258 0.7249 0.8087 37 1 6.4505 2.7315 -2.4555 38 1 10.4470 1.5936 -0.9226 39 1 11.3294 2.1217 -3.5530 40 1 11.4036 3.6367 -2.6216 41 1 12.8095 2.5167 -0.9132 42 1 12.7348 1.0020 -1.8449 43 1 16.3032 1.3562 -1.0066 44 1 3.5571 3.8231 -2.0455 45 1 4.3242 2.6551 -3.1479 46 1 2.6737 2.3623 -2.5493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361909911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:43 Heat of formation + Delta-G solvation = -10.135860 kcal Electronic energy + Delta-G solvation = -26273.754780 eV Core-core repulsion = 22392.806325 eV Total energy + Delta-G solvation = -3880.948455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -41.80038 -40.29794 -38.35145 -36.83916 -35.44053 -34.55354 -32.88968 -32.72771 -30.98688 -29.84366 -28.93702 -27.30573 -25.68783 -25.04666 -23.73787 -22.62267 -21.19766 -20.67353 -20.34511 -19.49517 -18.11770 -17.31687 -16.63733 -16.29117 -16.03489 -15.83885 -15.50955 -15.35543 -14.89255 -14.50722 -14.47175 -14.22787 -13.92366 -13.58968 -13.43998 -13.28229 -13.06786 -12.91187 -12.73077 -12.60798 -12.32651 -12.30778 -12.06667 -11.57469 -11.42397 -11.34560 -11.22459 -11.06395 -10.90627 -10.80934 -10.66634 -10.40403 -9.79740 -9.45714 -9.43760 -9.21452 -8.72207 -8.41968 -7.86601 -6.09942 -4.13708 1.26397 1.77390 2.03928 2.58631 2.68805 3.29285 3.35656 3.39182 3.46622 3.85752 4.00812 4.26578 4.32032 4.40220 4.47820 4.63773 4.66644 4.73375 4.83112 4.97615 5.01267 5.07851 5.17901 5.26966 5.28423 5.33983 5.45228 5.48444 5.51856 5.56992 5.78098 5.79711 5.95281 6.17047 6.23013 6.57033 6.64949 6.67862 6.76116 7.03501 7.43461 7.51745 7.57767 7.66988 7.87043 7.90177 8.19307 8.31405 8.91851 9.51229 11.01500 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.040303 B = 0.001860 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.568147 B =15050.852367 C =15470.393034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.164 3.836 4 H 0.100 0.900 5 C -0.163 4.163 6 N -0.361 5.361 7 N -0.282 5.282 8 C 0.055 3.945 9 C -0.003 4.003 10 N -0.615 5.615 11 C 0.508 3.492 12 O -0.509 6.509 13 C 0.503 3.497 14 O -0.533 6.533 15 N -0.683 5.683 16 C 0.119 3.881 17 C 0.010 3.990 18 C -0.524 4.524 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.051 3.949 27 C -0.091 4.091 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.207 0.793 37 H 0.420 0.580 38 H 0.411 0.589 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.263 0.737 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.709 0.213 1.676 31.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C 0.062 3.938 4 H 0.118 0.882 5 C -0.220 4.220 6 N -0.146 5.146 7 N -0.103 5.103 8 C -0.131 4.131 9 C -0.108 4.108 10 N -0.262 5.262 11 C 0.290 3.710 12 O -0.384 6.384 13 C 0.282 3.718 14 O -0.411 6.411 15 N -0.334 5.334 16 C -0.003 4.003 17 C -0.027 4.027 18 C -0.562 4.562 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.078 4.078 27 C -0.150 4.150 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.224 0.776 37 H 0.257 0.743 38 H 0.247 0.753 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -32.322 -0.383 2.696 32.437 hybrid contribution 1.425 0.635 -1.152 1.939 sum -30.897 0.253 1.544 30.937 Atomic orbital electron populations 1.21806 0.94399 1.02536 1.02167 1.21873 0.96389 0.94983 1.03842 1.21338 0.74062 0.98139 1.00236 0.88200 1.22181 1.02052 1.00993 0.96809 1.48381 1.05960 1.42520 1.17754 1.77364 0.98503 1.19583 1.14855 1.24518 0.96632 0.97948 0.94040 1.17433 0.86108 1.09686 0.97545 1.42427 1.03210 1.54129 1.26433 1.20457 0.83907 0.80609 0.85982 1.90645 1.84682 1.38162 1.24890 1.19712 0.84465 0.81859 0.85785 1.90739 1.85082 1.39915 1.25376 1.46219 1.05049 1.53849 1.28274 1.21957 0.84841 0.99331 0.94161 1.19364 0.89077 0.97486 0.96794 1.21008 0.90532 1.35608 1.09099 0.92160 1.25001 0.99100 0.94957 0.95209 1.69956 1.21143 1.38803 1.23107 0.86495 0.81784 0.78479 0.80680 1.20558 1.21163 1.19737 1.20347 0.90424 1.02439 0.94631 1.20431 1.01640 0.99498 0.93393 0.92469 0.91957 0.92014 0.91385 0.90324 0.90922 0.92056 0.90471 0.77645 0.74317 0.75262 0.91775 0.91773 0.95610 0.95599 0.92767 0.90014 0.89758 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.67 37.16 0.36 -0.24 16 2 C -0.13 -0.83 5.66 -26.73 -0.15 -0.98 16 3 C 0.16 1.08 3.11 -67.93 -0.21 0.87 16 4 H 0.10 0.45 6.68 -51.93 -0.35 0.10 16 5 C -0.16 -0.98 9.21 37.16 0.34 -0.64 16 6 N -0.36 -3.63 3.28 -50.50 -0.17 -3.80 16 7 N -0.28 -3.63 12.41 30.72 0.38 -3.24 16 8 C 0.06 0.76 10.84 -17.19 -0.19 0.57 16 9 C 0.00 -0.04 6.86 -83.96 -0.58 -0.62 16 10 N -0.62 -7.64 5.45 -10.48 -0.06 -7.69 16 11 C 0.51 7.60 7.86 -11.65 -0.09 7.51 16 12 O -0.51 -8.29 13.63 5.45 0.07 -8.22 16 13 C 0.50 8.44 7.88 -11.64 -0.09 8.35 16 14 O -0.53 -9.77 16.47 5.49 0.09 -9.67 16 15 N -0.68 -12.17 5.55 -60.77 -0.34 -12.50 16 16 C 0.12 2.44 5.61 -4.04 -0.02 2.41 16 17 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 18 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 22 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 26 C 0.05 0.50 6.96 -81.95 -0.57 -0.07 16 27 C -0.09 -0.54 9.76 36.00 0.35 -0.19 16 28 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.21 6.57 -51.93 -0.34 -0.13 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.29 6.57 -51.93 -0.34 -0.05 16 36 H 0.21 2.96 5.92 -52.49 -0.31 2.65 16 37 H 0.42 4.41 7.54 -40.82 -0.31 4.11 16 38 H 0.41 6.96 7.94 -40.82 -0.32 6.63 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.45 7.60 -51.93 -0.39 0.06 16 46 H 0.07 0.31 7.11 -51.93 -0.37 -0.06 16 LS Contribution 385.57 15.07 5.81 5.81 Total: -1.00 -32.26 385.57 -6.82 -39.08 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.93 Total: 5.28 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -1.40 Total: 4.05 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.56 Total: -52.49 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.16 Total: -17.89 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.26 -6.82 -39.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361909911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.946 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds