Wall clock time and date at job start Tue Mar 31 2020 12:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46938 * 2 1 4 4 H 1.09000 * 109.47421 * 305.00157 * 3 2 1 5 5 C 1.53000 * 109.47242 * 65.00288 * 3 2 1 6 6 N 1.46502 * 109.46865 * 184.99606 * 3 2 1 7 7 N 1.40052 * 125.99965 * 299.96129 * 6 3 2 8 8 C 1.30818 * 108.36935 * 180.02562 * 7 6 3 9 9 C 1.40341 * 108.21072 * 359.97438 * 8 7 6 10 10 N 1.40477 * 126.11463 * 180.02562 * 9 8 7 11 11 C 1.34773 * 120.00232 * 0.02562 * 10 9 8 12 12 O 1.21402 * 119.99966 * 359.97438 * 11 10 9 13 13 C 1.49323 * 119.99878 * 180.02562 * 11 10 9 14 14 O 1.21360 * 120.00248 * 0.02562 * 13 11 10 15 15 N 1.34782 * 119.99790 * 179.97438 * 13 11 10 16 16 C 1.46499 * 119.99717 * 180.02562 * 15 13 11 17 17 C 1.53001 * 109.46854 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.47368 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99745 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00683 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99678 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00300 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46862 * 90.00913 * 22 20 18 24 24 H 1.48505 * 109.47199 * 210.00294 * 22 20 18 25 25 H 1.48499 * 109.47269 * 330.00400 * 22 20 18 26 26 C 1.35225 * 125.98939 * 120.00461 * 6 3 2 27 27 C 1.50697 * 126.18363 * 359.69748 * 26 6 3 28 28 H 1.09004 * 109.46796 * 59.99792 * 1 2 3 29 29 H 1.08994 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46872 * 300.00083 * 1 2 3 31 31 H 1.08996 * 109.47043 * 240.00187 * 2 1 3 32 32 H 1.08996 * 109.46474 * 120.00185 * 2 1 3 33 33 H 1.08997 * 109.47838 * 59.99230 * 5 3 2 34 34 H 1.09002 * 109.47385 * 179.97438 * 5 3 2 35 35 H 1.09005 * 109.47041 * 299.99723 * 5 3 2 36 36 H 1.07997 * 125.89454 * 180.02562 * 8 7 6 37 37 H 0.97007 * 119.99871 * 179.97438 * 10 9 8 38 38 H 0.96993 * 119.99947 * 0.02562 * 15 13 11 39 39 H 1.09006 * 109.47196 * 299.99390 * 16 15 13 40 40 H 1.08993 * 109.47600 * 60.00294 * 16 15 13 41 41 H 1.08997 * 109.47215 * 299.99336 * 17 16 15 42 42 H 1.08997 * 109.47527 * 59.99615 * 17 16 15 43 43 H 0.96991 * 120.00409 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.47283 * 90.00266 * 27 26 6 45 45 H 1.08998 * 109.47716 * 210.00425 * 27 26 6 46 46 H 1.09004 * 109.46987 * 330.00566 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 7 3.5001 1.4442 -0.1203 7 7 4.4004 0.8511 0.7736 8 6 5.6150 1.0608 0.3353 9 6 5.5302 1.7964 -0.8568 10 7 6.6119 2.2258 -1.6435 11 6 7.8739 1.9343 -1.2708 12 8 8.0758 1.3010 -0.2550 13 6 9.0237 2.3913 -2.1069 14 8 8.8218 3.0255 -3.1216 15 7 10.2857 2.1002 -1.7339 16 6 11.4138 2.5490 -2.5538 17 6 12.7248 2.0898 -1.9125 18 6 13.8853 2.5509 -2.7562 19 1 13.7057 3.1154 -3.6592 20 6 15.1763 2.2531 -2.3748 21 7 15.3951 1.5661 -1.2748 22 14 16.6147 2.8252 -3.4202 23 1 17.0544 4.1684 -2.9644 24 1 17.7386 1.8641 -3.2845 25 1 16.1947 2.8980 -4.8427 26 6 4.2149 2.0196 -1.1136 27 6 3.6537 2.7667 -2.2958 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0698 1.5875 2.1492 34 1 1.9990 3.1541 1.3076 35 1 0.5490 2.1252 1.3970 36 1 6.5258 0.7249 0.8087 37 1 6.4505 2.7315 -2.4555 38 1 10.4470 1.5936 -0.9226 39 1 11.3294 2.1217 -3.5530 40 1 11.4036 3.6367 -2.6216 41 1 12.8095 2.5167 -0.9132 42 1 12.7348 1.0020 -1.8449 43 1 16.3032 1.3562 -1.0066 44 1 3.5571 3.8231 -2.0455 45 1 4.3242 2.6551 -3.1479 46 1 2.6737 2.3623 -2.5493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361909911.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:42 Heat of formation + Delta-G solvation = -32.496039 kcal Electronic energy + Delta-G solvation = -26274.724390 eV Core-core repulsion = 22392.806325 eV Total energy + Delta-G solvation = -3881.918066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.71289 -41.53006 -39.64134 -37.50573 -36.89180 -35.79170 -34.78436 -33.47961 -31.73655 -31.56833 -29.60321 -28.18564 -27.19576 -25.77189 -25.13707 -23.47230 -22.84052 -21.83182 -21.24640 -20.48872 -19.29657 -18.55608 -18.17752 -17.43751 -17.22221 -16.93854 -16.49448 -16.44931 -16.24377 -15.91560 -15.68156 -15.19328 -15.03172 -14.64994 -14.44176 -14.29993 -13.95239 -13.84607 -13.54639 -13.35951 -13.24641 -13.09927 -12.93662 -12.74495 -12.70648 -12.57563 -12.50694 -12.27256 -12.20590 -11.96758 -11.70124 -11.66858 -11.55746 -11.42153 -10.70807 -10.60467 -10.25906 -10.20708 -8.79765 -8.22216 -6.33403 0.12324 0.81500 1.10914 1.44119 1.44758 1.54470 1.57080 1.62986 2.23390 2.40807 2.66911 3.12867 3.37492 3.43323 3.62677 3.82320 3.88950 4.07441 4.12945 4.33047 4.39997 4.40851 4.47289 4.47308 4.61056 4.68064 4.73324 4.83076 4.84451 4.91105 4.97466 5.04436 5.07161 5.08279 5.11223 5.29198 5.40758 5.43744 5.56537 5.64676 5.76964 5.92707 6.03916 6.13967 6.32669 6.58269 6.73172 6.81126 6.90375 7.36160 8.89760 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.040303 B = 0.001860 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.568147 B =15050.852367 C =15470.393034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.153 3.847 4 H 0.134 0.866 5 C -0.158 4.158 6 N -0.354 5.354 7 N -0.307 5.307 8 C 0.036 3.964 9 C -0.038 4.038 10 N -0.595 5.595 11 C 0.511 3.489 12 O -0.528 6.528 13 C 0.509 3.491 14 O -0.545 6.545 15 N -0.686 5.686 16 C 0.138 3.862 17 C 0.017 3.983 18 C -0.544 4.544 19 H 0.066 0.934 20 C 0.004 3.996 21 N -0.928 5.928 22 Si 0.968 3.032 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.263 1.263 26 C 0.074 3.926 27 C -0.094 4.094 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.190 0.810 37 H 0.429 0.571 38 H 0.415 0.585 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.008 0.992 42 H 0.008 0.992 43 H 0.265 0.735 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.171 1.506 -0.079 34.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.151 0.849 5 C -0.216 4.216 6 N -0.139 5.139 7 N -0.129 5.129 8 C -0.150 4.150 9 C -0.142 4.142 10 N -0.242 5.242 11 C 0.292 3.708 12 O -0.405 6.405 13 C 0.290 3.710 14 O -0.424 6.424 15 N -0.337 5.337 16 C 0.016 3.984 17 C -0.021 4.021 18 C -0.583 4.583 19 H 0.084 0.916 20 C -0.194 4.194 21 N -0.568 5.568 22 Si 0.792 3.208 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.187 1.187 26 C -0.057 4.057 27 C -0.152 4.152 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.207 0.793 37 H 0.269 0.731 38 H 0.252 0.748 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.074 0.926 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -34.846 0.914 0.939 34.871 hybrid contribution 1.998 0.223 -0.578 2.091 sum -32.848 1.137 0.360 32.870 Atomic orbital electron populations 1.21786 0.92234 1.02982 1.03381 1.21816 0.98148 0.94384 1.02294 1.21806 0.72076 0.98878 1.01896 0.84881 1.22162 1.03698 1.00168 0.95564 1.48819 1.07038 1.41082 1.16944 1.77312 0.98710 1.20719 1.16126 1.24363 0.96591 0.99011 0.95043 1.17577 0.87008 1.11696 0.97917 1.42202 1.02359 1.53178 1.26455 1.19990 0.84188 0.81008 0.85608 1.90659 1.84901 1.39331 1.25584 1.19929 0.84439 0.81078 0.85581 1.90724 1.85310 1.40375 1.25965 1.46043 1.05039 1.54343 1.28292 1.21502 0.83966 0.99080 0.93892 1.19192 0.90836 0.96119 0.95920 1.21459 0.91652 1.35571 1.09578 0.91583 1.25923 1.02112 0.94987 0.96424 1.70080 1.21875 1.40026 1.24802 0.85398 0.78055 0.78066 0.79231 1.19815 1.20867 1.18691 1.21001 0.89488 1.00348 0.94837 1.20681 1.02934 0.99999 0.91600 0.90805 0.92004 0.91172 0.92309 0.92577 0.93161 0.92405 0.87680 0.79347 0.73123 0.74840 0.91807 0.91781 0.97401 0.97393 0.92626 0.88173 0.88908 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.67 71.98 0.70 -0.07 16 2 C -0.13 -1.40 5.66 30.60 0.17 -1.23 16 3 C 0.15 1.66 3.11 44.99 0.14 1.80 16 4 H 0.13 0.60 6.68 -2.39 -0.02 0.58 16 5 C -0.16 -1.60 9.21 71.98 0.66 -0.93 16 6 N -0.35 -6.65 3.28 -313.68 -1.03 -7.68 16 7 N -0.31 -8.06 12.41 -56.72 -0.70 -8.76 16 8 C 0.04 1.01 10.84 85.36 0.93 1.94 16 9 C -0.04 -0.92 6.86 37.71 0.26 -0.67 16 10 N -0.59 -14.39 5.45 -305.42 -1.66 -16.05 16 11 C 0.51 15.38 7.86 87.23 0.69 16.07 16 12 O -0.53 -17.83 13.63 -3.41 -0.05 -17.88 16 13 C 0.51 17.07 7.88 87.23 0.69 17.75 16 14 O -0.55 -19.54 16.47 -3.28 -0.05 -19.59 16 15 N -0.69 -24.79 5.55 -464.54 -2.58 -27.37 16 16 C 0.14 5.72 5.61 86.38 0.48 6.21 16 17 C 0.02 0.85 5.09 29.85 0.15 1.00 16 18 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 19 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 20 C 0.00 0.23 5.46 84.65 0.46 0.70 16 21 N -0.93 -54.97 13.29 21.45 0.28 -54.68 16 22 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 26 C 0.07 1.32 6.96 41.48 0.29 1.61 16 27 C -0.09 -0.74 9.76 71.24 0.70 -0.05 16 28 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.26 6.57 -2.38 -0.02 0.25 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.10 0.47 6.57 -2.38 -0.02 0.45 16 36 H 0.19 5.88 5.92 -2.91 -0.02 5.87 16 37 H 0.43 8.38 7.54 -92.70 -0.70 7.68 16 38 H 0.42 14.52 7.94 -92.71 -0.74 13.78 16 39 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 40 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 44 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.09 0.65 7.60 -2.39 -0.02 0.63 16 46 H 0.10 0.32 7.11 -2.38 -0.02 0.31 16 Total: -1.00 -71.03 385.57 2.36 -68.67 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -0.42 Total: 23.56 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 6.55 Total: 14.42 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -5.69 Total: -114.55 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.10 Total: -37.47 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -71.03 2.36 -68.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361909911.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.172 kcal (2) G-P(sol) polarization free energy of solvation -71.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds