Wall clock time and date at job start Tue Mar 31 2020 14:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 108.38511 * 2 1 4 4 C 1.51623 * 108.56565 * 117.74476 * 2 1 3 5 5 N 1.46970 * 110.99822 * 188.47144 * 4 2 1 6 6 C 1.46896 * 111.00172 * 149.95770 * 5 4 2 7 7 C 1.50694 * 109.47297 * 286.44062 * 6 5 4 8 8 C 1.38636 * 119.74914 * 275.77104 * 7 6 5 9 9 C 1.37624 * 120.24550 * 179.76024 * 8 7 6 10 10 C 1.40706 * 119.74828 * 0.53643 * 9 8 7 11 11 C 1.41398 * 120.24599 * 179.74213 * 10 9 8 12 12 H 1.07996 * 119.99815 * 149.18275 * 11 10 9 13 13 C 1.39943 * 119.99769 * 329.18163 * 11 10 9 14 14 N 1.30823 * 119.99815 * 166.93329 * 13 11 10 15 15 Si 1.86797 * 120.00177 * 346.93597 * 13 11 10 16 16 H 1.48502 * 109.47057 * 92.72045 * 15 13 11 17 17 H 1.48504 * 109.46938 * 212.72225 * 15 13 11 18 18 H 1.48500 * 109.47009 * 332.72131 * 15 13 11 19 19 C 1.40716 * 119.51113 * 359.72101 * 10 9 8 20 20 C 1.37619 * 119.74439 * 0.02562 * 19 10 9 21 21 C 1.40247 * 109.97287 * 273.18673 * 5 4 2 22 22 C 1.39013 * 119.77339 * 250.76547 * 21 5 4 23 23 C 1.38166 * 119.58426 * 179.86937 * 22 21 5 24 24 C 1.38313 * 120.17944 * 359.47036 * 23 22 21 25 25 C 1.38376 * 120.18272 * 0.58478 * 24 23 22 26 26 C 1.37994 * 120.19581 * 70.49322 * 21 5 4 27 27 C 1.51471 * 119.75140 * 0.59142 * 26 21 5 28 28 N 1.45679 * 108.56443 * 242.25277 * 2 1 3 29 29 H 1.09002 * 109.47084 * 177.75121 * 1 2 3 30 30 H 1.08995 * 109.46740 * 297.74861 * 1 2 3 31 31 H 1.08999 * 109.46812 * 57.74660 * 1 2 3 32 32 H 1.08998 * 109.16982 * 308.86120 * 4 2 1 33 33 H 1.08995 * 109.17184 * 68.12951 * 4 2 1 34 34 H 1.09000 * 109.46899 * 46.44242 * 6 5 4 35 35 H 1.09002 * 109.47144 * 166.43893 * 6 5 4 36 36 H 1.07992 * 119.87504 * 0.02562 * 8 7 6 37 37 H 1.08000 * 120.12070 * 180.28491 * 9 8 7 38 38 H 0.96995 * 119.99989 * 179.97438 * 14 13 11 39 39 H 1.08000 * 120.13213 * 180.02562 * 19 10 9 40 40 H 1.07999 * 119.87634 * 180.02562 * 20 19 10 41 41 H 1.08002 * 120.20611 * 359.59321 * 22 21 5 42 42 H 1.07997 * 119.90869 * 179.71585 * 23 22 21 43 43 H 1.07995 * 119.90699 * 180.31900 * 24 23 22 44 44 H 1.07995 * 120.16576 * 179.73947 * 25 24 23 45 45 H 1.08997 * 109.68698 * 50.42924 * 27 26 21 46 46 H 1.09000 * 109.68336 * 170.95286 * 27 26 21 47 47 H 1.00901 * 111.00465 * 45.97102 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8738 1.0344 0.0000 4 6 2.0128 -0.6691 1.2721 5 7 3.4670 -0.5215 1.4256 6 6 3.8460 -0.4895 2.8445 7 6 3.4510 0.8371 3.4402 8 6 4.2955 1.9288 3.3093 9 6 3.9427 3.1463 3.8451 10 6 2.7249 3.2779 4.5375 11 6 2.3544 4.5225 5.0969 12 1 1.3112 4.7909 5.1738 13 6 3.3397 5.4066 5.5509 14 7 3.0283 6.6466 5.8283 15 14 5.0995 4.8161 5.7607 16 1 5.8638 5.0861 4.5164 17 1 5.7311 5.5359 6.8957 18 1 5.1024 3.3570 6.0367 19 6 1.8781 2.1617 4.6688 20 6 2.2488 0.9552 4.1204 21 6 4.1276 -1.5592 0.7521 22 6 4.7680 -2.5562 1.4790 23 6 5.4153 -3.5782 0.8115 24 6 5.4164 -3.6145 -0.5711 25 6 4.7795 -2.6209 -1.2937 26 6 4.1382 -1.5952 -0.6273 27 6 3.4446 -0.5017 -1.4131 28 7 1.9938 -0.6429 -1.2222 29 1 -0.3633 -1.0269 -0.0403 30 1 -0.3632 0.4785 0.9095 31 1 -0.3633 0.5484 -0.8691 32 1 1.5144 -0.2133 2.1276 33 1 1.7632 -1.7295 1.2357 34 1 3.3350 -1.2928 3.3752 35 1 4.9241 -0.6222 2.9356 36 1 5.2317 1.8243 2.7812 37 1 4.5999 3.9965 3.7379 38 1 3.7112 7.2592 6.1433 39 1 0.9408 2.2515 5.1979 40 1 1.6003 0.0972 4.2196 41 1 4.7633 -2.5297 2.5587 42 1 5.9184 -4.3530 1.3710 43 1 5.9194 -4.4181 -1.0883 44 1 4.7842 -2.6472 -2.3733 45 1 3.7695 0.4735 -1.0506 46 1 3.6874 -0.5995 -2.4712 47 1 1.4884 -0.3002 -2.0254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398988785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:17 Heat of formation + Delta-G solvation = 58.257374 kcal Electronic energy + Delta-G solvation = -27144.233497 eV Core-core repulsion = 23677.100058 eV Total energy + Delta-G solvation = -3467.133439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.47669 -38.08142 -37.16466 -35.84659 -33.61366 -32.55187 -31.15558 -30.36960 -29.76328 -28.74198 -27.25597 -25.54043 -24.55821 -23.49299 -21.90654 -21.39482 -20.60647 -20.30408 -19.69817 -17.45144 -17.29219 -16.22441 -15.75467 -15.36817 -15.22077 -15.08938 -14.76717 -14.41938 -14.16534 -13.92335 -13.80211 -13.40442 -13.17742 -12.90812 -12.79851 -12.37871 -12.28187 -11.98813 -11.95034 -11.89111 -11.58244 -11.35404 -11.18974 -11.02712 -11.00746 -10.91744 -10.79303 -10.48702 -10.26187 -9.82698 -9.61388 -9.21794 -9.14551 -8.75718 -8.41864 -7.75742 -7.73030 -7.55359 -6.94852 -4.51811 1.43769 1.46939 2.49614 2.65381 3.09456 3.20549 3.29915 3.71267 3.96400 4.00048 4.32879 4.55789 4.80659 4.92091 5.04345 5.07803 5.09512 5.28100 5.34949 5.37889 5.43957 5.49109 5.59510 5.64522 5.68189 5.73655 5.81869 5.88973 5.93784 6.00229 6.04699 6.06030 6.09607 6.14516 6.24729 6.39277 6.50865 6.51578 6.60586 6.79514 6.85878 6.90575 7.05513 7.14258 7.22945 7.38284 7.39354 7.47936 7.62355 7.76955 7.85570 8.09009 8.33110 8.62126 8.77934 10.07789 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.003566 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.016207 B = 7849.219064 C = 8641.401272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.093 3.907 3 H 0.046 0.954 4 C 0.070 3.930 5 N -0.487 5.487 6 C 0.116 3.884 7 C -0.210 4.210 8 C -0.051 4.051 9 C -0.239 4.239 10 C 0.096 3.904 11 C -0.446 4.446 12 H 0.090 0.910 13 C 0.082 3.918 14 N -0.814 5.814 15 Si 0.916 3.084 16 H -0.271 1.271 17 H -0.293 1.293 18 H -0.244 1.244 19 C -0.208 4.208 20 C -0.075 4.075 21 C 0.120 3.880 22 C -0.169 4.169 23 C -0.104 4.104 24 C -0.148 4.148 25 C -0.094 4.094 26 C -0.082 4.082 27 C 0.107 3.893 28 N -0.689 5.689 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.285 0.715 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 -15.752 -11.724 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 H 0.064 0.936 4 C -0.056 4.056 5 N -0.203 5.203 6 C -0.010 4.010 7 C -0.212 4.212 8 C -0.070 4.070 9 C -0.258 4.258 10 C 0.093 3.907 11 C -0.475 4.475 12 H 0.108 0.892 13 C -0.136 4.136 14 N -0.438 5.438 15 Si 0.743 3.257 16 H -0.198 1.198 17 H -0.221 1.221 18 H -0.167 1.167 19 C -0.227 4.227 20 C -0.094 4.094 21 C 0.023 3.977 22 C -0.190 4.190 23 C -0.123 4.123 24 C -0.167 4.167 25 C -0.113 4.113 26 C -0.085 4.085 27 C -0.022 4.022 28 N -0.321 5.321 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.143 0.857 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.673 -15.545 -11.493 19.404 hybrid contribution 0.722 0.231 0.243 0.796 sum 2.394 -15.314 -11.250 19.152 Atomic orbital electron populations 1.21902 0.94416 1.02227 1.02248 1.20914 0.94519 0.96506 0.89790 0.93580 1.21974 0.86074 0.99525 0.98029 1.59690 1.06669 1.40494 1.13455 1.20924 0.99805 0.95426 0.84820 1.18821 0.98300 0.94365 1.09719 1.20384 0.97230 0.92538 0.96840 1.21032 1.00711 0.96941 1.07165 1.17754 0.90925 0.92667 0.89333 1.19531 0.96172 0.97683 1.34117 0.89217 1.26161 1.01592 0.93646 0.92235 1.69658 1.37049 1.04127 1.32987 0.86272 0.80856 0.81212 0.77356 1.19773 1.22133 1.16691 1.20973 1.01851 0.92569 1.07353 1.20481 0.94978 0.96435 0.97459 1.18874 0.96670 0.89442 0.92724 1.21551 1.02660 0.94637 1.00142 1.20963 0.98926 0.97987 0.94453 1.21004 1.01984 0.99564 0.94128 1.20879 0.97413 0.93712 0.99289 1.19448 0.99659 0.97243 0.92135 1.20894 0.87177 0.96175 0.97934 1.59433 1.04275 1.63606 1.04823 0.92072 0.91564 0.92636 0.89013 0.93724 0.94460 0.90921 0.89020 0.88322 0.90463 0.88242 0.89176 0.85723 0.86562 0.86593 0.86242 0.92504 0.90972 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.19 37.16 0.34 -1.32 16 2 C 0.09 1.23 2.79 -69.07 -0.19 1.03 16 3 H 0.05 0.71 7.91 -51.93 -0.41 0.30 16 4 C 0.07 1.02 4.50 -4.48 -0.02 1.00 16 5 N -0.49 -7.63 4.18 -173.32 -0.72 -8.35 16 6 C 0.12 1.88 3.70 -4.98 -0.02 1.86 16 7 C -0.21 -4.11 5.07 -104.33 -0.53 -4.64 16 8 C -0.05 -1.10 9.69 -39.66 -0.38 -1.48 16 9 C -0.24 -5.72 7.02 -38.87 -0.27 -6.00 16 10 C 0.10 2.40 5.13 -106.83 -0.55 1.86 16 11 C -0.45 -12.01 9.60 -37.74 -0.36 -12.37 16 12 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 13 C 0.08 2.15 5.46 -17.34 -0.09 2.05 16 14 N -0.81 -21.78 13.93 55.55 0.77 -21.01 16 15 Si 0.92 21.01 24.41 -169.99 -4.15 16.86 16 16 H -0.27 -6.08 6.66 56.52 0.38 -5.70 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.24 -5.70 6.70 56.52 0.38 -5.32 16 19 C -0.21 -4.68 9.80 -38.87 -0.38 -5.06 16 20 C -0.07 -1.48 8.29 -39.66 -0.33 -1.81 16 21 C 0.12 1.76 5.01 -83.81 -0.42 1.34 16 22 C -0.17 -2.27 8.78 -39.32 -0.35 -2.62 16 23 C -0.10 -1.22 10.04 -39.58 -0.40 -1.62 16 24 C -0.15 -1.63 10.05 -39.50 -0.40 -2.03 16 25 C -0.09 -1.09 9.69 -39.58 -0.38 -1.47 16 26 C -0.08 -1.10 5.42 -104.38 -0.57 -1.67 16 27 C 0.11 1.30 6.11 -4.54 -0.03 1.28 16 28 N -0.69 -8.13 6.24 -109.09 -0.68 -8.81 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 31 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 32 H 0.09 1.41 5.44 -51.93 -0.28 1.13 16 33 H 0.04 0.66 7.76 -51.93 -0.40 0.26 16 34 H 0.04 0.57 7.54 -51.93 -0.39 0.18 16 35 H 0.07 1.16 6.98 -51.93 -0.36 0.80 16 36 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.10 2.39 4.42 -52.49 -0.23 2.16 16 38 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 39 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.09 1.55 7.61 -52.49 -0.40 1.15 16 41 H 0.12 1.59 6.04 -52.49 -0.32 1.27 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.12 1.11 7.98 -52.49 -0.42 0.69 16 45 H 0.06 0.80 7.74 -51.93 -0.40 0.40 16 46 H 0.07 0.71 7.93 -51.93 -0.41 0.30 16 47 H 0.34 3.32 8.61 -39.29 -0.34 2.98 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -27.72 363.44 -11.56 -39.28 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.93 Total: 8.22 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: -5.33 Total: -31.66 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.63 Total: -38.17 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.15 Total: 16.86 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.72 -11.56 -39.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398988785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.538 kcal (2) G-P(sol) polarization free energy of solvation -27.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds