Wall clock time and date at job start Tue Mar 31 2020 14:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 108.38511 * 2 1 4 4 C 1.51623 * 108.56565 * 117.74476 * 2 1 3 5 5 N 1.46970 * 110.99822 * 188.47144 * 4 2 1 6 6 C 1.46896 * 111.00172 * 149.95770 * 5 4 2 7 7 C 1.50694 * 109.47297 * 286.44062 * 6 5 4 8 8 C 1.38636 * 119.74914 * 275.77104 * 7 6 5 9 9 C 1.37624 * 120.24550 * 179.76024 * 8 7 6 10 10 C 1.40706 * 119.74828 * 0.53643 * 9 8 7 11 11 C 1.41398 * 120.24599 * 179.74213 * 10 9 8 12 12 H 1.07996 * 119.99815 * 149.18275 * 11 10 9 13 13 C 1.39943 * 119.99769 * 329.18163 * 11 10 9 14 14 N 1.30823 * 119.99815 * 166.93329 * 13 11 10 15 15 Si 1.86797 * 120.00177 * 346.93597 * 13 11 10 16 16 H 1.48502 * 109.47057 * 92.72045 * 15 13 11 17 17 H 1.48504 * 109.46938 * 212.72225 * 15 13 11 18 18 H 1.48500 * 109.47009 * 332.72131 * 15 13 11 19 19 C 1.40716 * 119.51113 * 359.72101 * 10 9 8 20 20 C 1.37619 * 119.74439 * 0.02562 * 19 10 9 21 21 C 1.40247 * 109.97287 * 273.18673 * 5 4 2 22 22 C 1.39013 * 119.77339 * 250.76547 * 21 5 4 23 23 C 1.38166 * 119.58426 * 179.86937 * 22 21 5 24 24 C 1.38313 * 120.17944 * 359.47036 * 23 22 21 25 25 C 1.38376 * 120.18272 * 0.58478 * 24 23 22 26 26 C 1.37994 * 120.19581 * 70.49322 * 21 5 4 27 27 C 1.51471 * 119.75140 * 0.59142 * 26 21 5 28 28 N 1.45679 * 108.56443 * 242.25277 * 2 1 3 29 29 H 1.09002 * 109.47084 * 177.75121 * 1 2 3 30 30 H 1.08995 * 109.46740 * 297.74861 * 1 2 3 31 31 H 1.08999 * 109.46812 * 57.74660 * 1 2 3 32 32 H 1.08998 * 109.16982 * 308.86120 * 4 2 1 33 33 H 1.08995 * 109.17184 * 68.12951 * 4 2 1 34 34 H 1.09000 * 109.46899 * 46.44242 * 6 5 4 35 35 H 1.09002 * 109.47144 * 166.43893 * 6 5 4 36 36 H 1.07992 * 119.87504 * 0.02562 * 8 7 6 37 37 H 1.08000 * 120.12070 * 180.28491 * 9 8 7 38 38 H 0.96995 * 119.99989 * 179.97438 * 14 13 11 39 39 H 1.08000 * 120.13213 * 180.02562 * 19 10 9 40 40 H 1.07999 * 119.87634 * 180.02562 * 20 19 10 41 41 H 1.08002 * 120.20611 * 359.59321 * 22 21 5 42 42 H 1.07997 * 119.90869 * 179.71585 * 23 22 21 43 43 H 1.07995 * 119.90699 * 180.31900 * 24 23 22 44 44 H 1.07995 * 120.16576 * 179.73947 * 25 24 23 45 45 H 1.08997 * 109.68698 * 50.42924 * 27 26 21 46 46 H 1.09000 * 109.68336 * 170.95286 * 27 26 21 47 47 H 1.00901 * 111.00465 * 45.97102 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8738 1.0344 0.0000 4 6 2.0128 -0.6691 1.2721 5 7 3.4670 -0.5215 1.4256 6 6 3.8460 -0.4895 2.8445 7 6 3.4510 0.8371 3.4402 8 6 4.2955 1.9288 3.3093 9 6 3.9427 3.1463 3.8451 10 6 2.7249 3.2779 4.5375 11 6 2.3544 4.5225 5.0969 12 1 1.3112 4.7909 5.1738 13 6 3.3397 5.4066 5.5509 14 7 3.0283 6.6466 5.8283 15 14 5.0995 4.8161 5.7607 16 1 5.8638 5.0861 4.5164 17 1 5.7311 5.5359 6.8957 18 1 5.1024 3.3570 6.0367 19 6 1.8781 2.1617 4.6688 20 6 2.2488 0.9552 4.1204 21 6 4.1276 -1.5592 0.7521 22 6 4.7680 -2.5562 1.4790 23 6 5.4153 -3.5782 0.8115 24 6 5.4164 -3.6145 -0.5711 25 6 4.7795 -2.6209 -1.2937 26 6 4.1382 -1.5952 -0.6273 27 6 3.4446 -0.5017 -1.4131 28 7 1.9938 -0.6429 -1.2222 29 1 -0.3633 -1.0269 -0.0403 30 1 -0.3632 0.4785 0.9095 31 1 -0.3633 0.5484 -0.8691 32 1 1.5144 -0.2133 2.1276 33 1 1.7632 -1.7295 1.2357 34 1 3.3350 -1.2928 3.3752 35 1 4.9241 -0.6222 2.9356 36 1 5.2317 1.8243 2.7812 37 1 4.5999 3.9965 3.7379 38 1 3.7112 7.2592 6.1433 39 1 0.9408 2.2515 5.1979 40 1 1.6003 0.0972 4.2196 41 1 4.7633 -2.5297 2.5587 42 1 5.9184 -4.3530 1.3710 43 1 5.9194 -4.4181 -1.0883 44 1 4.7842 -2.6472 -2.3733 45 1 3.7695 0.4735 -1.0506 46 1 3.6874 -0.5995 -2.4712 47 1 1.4884 -0.3002 -2.0254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398988785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:16 Heat of formation + Delta-G solvation = 42.681117 kcal Electronic energy + Delta-G solvation = -27144.908935 eV Core-core repulsion = 23677.100058 eV Total energy + Delta-G solvation = -3467.808876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.53389 -39.72155 -38.18342 -37.05881 -35.44931 -33.49101 -32.83717 -31.59425 -31.25595 -29.90142 -28.60914 -26.79046 -25.64210 -24.82134 -23.48988 -22.80462 -21.73555 -21.49620 -21.02607 -19.37037 -18.33031 -17.59279 -17.16394 -16.46992 -16.31030 -16.13564 -15.98455 -15.85188 -15.61089 -15.46534 -15.10880 -14.70732 -14.39343 -14.28253 -14.12715 -13.84150 -13.71614 -13.40484 -13.07474 -13.00277 -12.92796 -12.65786 -12.50400 -12.40312 -12.17996 -12.05564 -11.99783 -11.96182 -11.78577 -11.61802 -11.46203 -10.99469 -10.28148 -9.68020 -9.50407 -9.40155 -9.37405 -8.89529 -8.80942 -6.52204 0.51968 0.53625 0.72457 0.85458 1.23819 1.37228 1.45944 2.09747 2.49865 2.78837 2.99288 3.37259 3.54021 3.89531 3.94698 4.01778 4.04982 4.13131 4.22899 4.27767 4.28571 4.39929 4.40656 4.47018 4.55866 4.64210 4.68182 4.70973 4.72797 4.76949 4.79301 4.93387 4.96283 5.03720 5.04500 5.09206 5.19281 5.28093 5.30965 5.43995 5.58692 5.60975 5.69604 5.73156 5.88243 5.94276 6.04072 6.07092 6.15587 6.23982 6.39577 6.46352 6.57537 6.72336 6.82575 8.19316 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.003566 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.016207 B = 7849.219064 C = 8641.401272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.097 3.903 3 H 0.018 0.982 4 C 0.072 3.928 5 N -0.498 5.498 6 C 0.121 3.879 7 C -0.184 4.184 8 C -0.061 4.061 9 C -0.249 4.249 10 C 0.075 3.925 11 C -0.484 4.484 12 H 0.056 0.944 13 C 0.045 3.955 14 N -0.857 5.857 15 Si 0.968 3.032 16 H -0.263 1.263 17 H -0.280 1.280 18 H -0.251 1.251 19 C -0.216 4.216 20 C -0.069 4.069 21 C 0.094 3.906 22 C -0.182 4.182 23 C -0.108 4.108 24 C -0.145 4.145 25 C -0.095 4.095 26 C -0.098 4.098 27 C 0.109 3.891 28 N -0.684 5.684 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.292 0.708 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.032 0.968 46 H 0.098 0.902 47 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 -19.575 -13.733 24.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.014 4.014 3 H 0.036 0.964 4 C -0.054 4.054 5 N -0.214 5.214 6 C -0.005 4.005 7 C -0.185 4.185 8 C -0.080 4.080 9 C -0.268 4.268 10 C 0.073 3.927 11 C -0.514 4.514 12 H 0.074 0.926 13 C -0.168 4.168 14 N -0.485 5.485 15 Si 0.793 3.207 16 H -0.189 1.189 17 H -0.207 1.207 18 H -0.175 1.175 19 C -0.235 4.235 20 C -0.088 4.088 21 C -0.002 4.002 22 C -0.203 4.203 23 C -0.127 4.127 24 C -0.163 4.163 25 C -0.114 4.114 26 C -0.101 4.101 27 C -0.020 4.020 28 N -0.317 5.317 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.157 0.843 43 H 0.162 0.838 44 H 0.162 0.838 45 H 0.050 0.950 46 H 0.116 0.884 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.058 -19.377 -13.522 23.826 hybrid contribution 0.265 1.093 0.681 1.315 sum 3.323 -18.283 -12.842 22.588 Atomic orbital electron populations 1.21849 0.92848 1.02876 1.02590 1.20827 0.95737 0.94746 0.90086 0.96416 1.21963 0.85748 0.99389 0.98270 1.59612 1.07183 1.41961 1.12616 1.20854 1.00444 0.93513 0.85710 1.19296 0.97006 0.95359 1.06861 1.20653 0.98442 0.92167 0.96735 1.21102 1.00337 0.97877 1.07528 1.17871 0.92174 0.92684 0.90018 1.19505 0.94928 0.99714 1.37288 0.92601 1.26789 1.04663 0.93591 0.91784 1.69692 1.38407 1.05045 1.35309 0.85464 0.77132 0.80194 0.77916 1.18918 1.20698 1.17469 1.21177 1.01756 0.93043 1.07541 1.20800 0.95406 0.96439 0.96117 1.19013 0.97875 0.89934 0.93410 1.21678 1.03115 0.95089 1.00388 1.21284 0.98375 0.97882 0.95112 1.21399 1.01032 0.99853 0.94061 1.21205 0.96531 0.93053 1.00647 1.19682 1.00319 0.98130 0.91935 1.20902 0.87148 0.94732 0.99232 1.59419 1.04386 1.63127 1.04810 0.91257 0.92307 0.91215 0.90122 0.93753 0.92860 0.90233 0.87201 0.88983 0.89734 0.87919 0.85754 0.85555 0.84317 0.83786 0.83837 0.94991 0.88410 0.82279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.19 71.98 0.66 -2.30 16 2 C 0.10 2.44 2.79 44.70 0.12 2.56 16 3 H 0.02 0.55 7.91 -2.38 -0.02 0.53 16 4 C 0.07 2.00 4.50 85.84 0.39 2.38 16 5 N -0.50 -14.67 4.18 -702.26 -2.93 -17.60 16 6 C 0.12 3.63 3.70 85.56 0.32 3.94 16 7 C -0.18 -6.83 5.07 -19.68 -0.10 -6.93 16 8 C -0.06 -2.56 9.69 22.22 0.22 -2.35 16 9 C -0.25 -11.99 7.02 22.73 0.16 -11.83 16 10 C 0.08 3.85 5.13 -21.29 -0.11 3.74 16 11 C -0.48 -27.64 9.60 23.46 0.23 -27.42 16 12 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 13 C 0.05 2.47 5.46 85.26 0.47 2.94 16 14 N -0.86 -48.23 13.93 21.83 0.30 -47.93 16 15 Si 0.97 44.24 24.41 68.60 1.67 45.92 16 16 H -0.26 -11.53 6.66 99.48 0.66 -10.87 16 17 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.25 -11.60 6.70 99.48 0.67 -10.93 16 19 C -0.22 -9.78 9.80 22.73 0.22 -9.56 16 20 C -0.07 -2.63 8.29 22.22 0.18 -2.45 16 21 C 0.09 2.55 5.01 37.92 0.19 2.74 16 22 C -0.18 -4.38 8.78 22.44 0.20 -4.19 16 23 C -0.11 -2.12 10.04 22.27 0.22 -1.90 16 24 C -0.14 -2.60 10.05 22.32 0.22 -2.37 16 25 C -0.10 -1.86 9.69 22.27 0.22 -1.64 16 26 C -0.10 -2.38 5.42 -19.71 -0.11 -2.49 16 27 C 0.11 2.43 6.11 85.78 0.52 2.96 16 28 N -0.68 -14.76 6.24 -499.04 -3.11 -17.88 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.30 8.07 -2.39 -0.02 1.28 16 31 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 32 H 0.08 2.35 5.44 -2.39 -0.01 2.34 16 33 H 0.04 1.22 7.76 -2.39 -0.02 1.20 16 34 H 0.05 1.45 7.54 -2.39 -0.02 1.43 16 35 H 0.08 2.32 6.98 -2.39 -0.02 2.30 16 36 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 37 H 0.09 4.50 4.42 -2.91 -0.01 4.49 16 38 H 0.29 14.82 8.30 -92.71 -0.77 14.05 16 39 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 40 H 0.12 3.90 7.61 -2.91 -0.02 3.88 16 41 H 0.13 2.88 6.04 -2.91 -0.02 2.86 16 42 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 43 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.14 2.03 7.98 -2.91 -0.02 2.01 16 45 H 0.03 0.88 7.74 -2.39 -0.02 0.86 16 46 H 0.10 1.63 7.93 -2.39 -0.02 1.61 16 47 H 0.36 6.07 8.61 -89.69 -0.77 5.30 16 Total: -1.00 -62.60 363.44 0.27 -62.33 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.12 Total: 29.32 kcal Atomic # 6 Polarization: -58.37 SS G_CDS: 4.22 Total: -54.15 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -5.74 Total: -83.41 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.67 Total: 45.92 kcal Total: -62.60 0.27 -62.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398988785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.007 kcal (2) G-P(sol) polarization free energy of solvation -62.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds