Wall clock time and date at job start Tue Mar 31 2020 14:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.43119 * 2 1 4 4 C 1.52816 * 109.43271 * 240.09506 * 2 1 3 5 5 N 1.47035 * 107.91397 * 273.03423 * 4 2 1 6 6 C 1.46900 * 111.00184 * 141.28595 * 5 4 2 7 7 C 1.50695 * 109.47226 * 294.87429 * 6 5 4 8 8 C 1.38635 * 119.75215 * 96.61995 * 7 6 5 9 9 C 1.37624 * 120.24723 * 180.02562 * 8 7 6 10 10 C 1.40715 * 119.74572 * 359.97270 * 9 8 7 11 11 C 1.41394 * 120.24415 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99700 * 338.02191 * 11 10 9 13 13 C 1.39943 * 120.00258 * 158.02802 * 11 10 9 14 14 N 1.30826 * 119.99987 * 333.53888 * 13 11 10 15 15 Si 1.86803 * 119.99913 * 153.53559 * 13 11 10 16 16 H 1.48493 * 109.47144 * 265.01336 * 15 13 11 17 17 H 1.48501 * 109.47074 * 25.01424 * 15 13 11 18 18 H 1.48504 * 109.46984 * 145.01240 * 15 13 11 19 19 C 1.40720 * 119.51158 * 0.27417 * 10 9 8 20 20 C 1.37618 * 119.74170 * 359.49235 * 19 10 9 21 21 C 1.39600 * 112.83144 * 266.60348 * 5 4 2 22 22 C 1.39581 * 117.60928 * 230.67448 * 21 5 4 23 23 C 1.37827 * 120.36275 * 181.64403 * 22 21 5 24 24 C 1.38322 * 119.86851 * 0.08548 * 23 22 21 25 25 C 1.38007 * 119.94740 * 359.24478 * 24 23 22 26 26 C 1.38192 * 122.78001 * 51.11488 * 21 5 4 27 27 C 1.50766 * 122.53350 * 357.39390 * 26 21 5 28 28 N 1.46696 * 111.25307 * 29.21573 * 27 26 21 29 29 H 1.08998 * 109.46884 * 179.90319 * 1 2 3 30 30 H 1.08998 * 109.47385 * 299.90358 * 1 2 3 31 31 H 1.08999 * 109.46856 * 59.90388 * 1 2 3 32 32 H 1.08994 * 109.77500 * 153.42893 * 4 2 1 33 33 H 1.08997 * 109.81424 * 32.66246 * 4 2 1 34 34 H 1.08998 * 109.47483 * 174.86548 * 6 5 4 35 35 H 1.09002 * 109.46953 * 54.87095 * 6 5 4 36 36 H 1.08001 * 119.87491 * 359.97438 * 8 7 6 37 37 H 1.07998 * 120.12604 * 179.97438 * 9 8 7 38 38 H 0.97000 * 119.99662 * 180.02562 * 14 13 11 39 39 H 1.07999 * 120.12398 * 179.72651 * 19 10 9 40 40 H 1.08006 * 119.87165 * 180.22528 * 20 19 10 41 41 H 1.08005 * 119.81664 * 1.68981 * 22 21 5 42 42 H 1.07997 * 120.06683 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.02213 * 179.26349 * 24 23 22 44 44 H 1.08004 * 119.73844 * 180.14218 * 25 24 23 45 45 H 1.09004 * 109.12045 * 268.75686 * 27 26 21 46 46 H 1.09001 * 109.12126 * 149.67385 * 27 26 21 47 47 H 1.00900 * 110.99772 * 32.59826 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0384 -0.7185 -1.2492 5 7 2.1190 -2.1545 -0.9438 6 6 1.6954 -2.9623 -2.0952 7 6 0.2345 -2.7161 -2.3713 8 6 -0.1372 -1.7961 -3.3394 9 6 -1.4684 -1.5629 -3.5995 10 6 -2.4536 -2.2630 -2.8788 11 6 -3.8243 -2.0320 -3.1377 12 1 -4.1381 -1.1086 -3.6018 13 6 -4.7743 -2.9999 -2.7927 14 7 -4.4302 -4.2604 -2.7280 15 14 -6.5339 -2.4919 -2.4244 16 1 -6.7017 -2.3151 -0.9596 17 1 -6.8345 -1.2121 -3.1151 18 1 -7.4641 -3.5446 -2.9058 19 6 -2.0646 -3.1906 -1.8947 20 6 -0.7276 -3.4112 -1.6549 21 6 3.3836 -2.5433 -0.4980 22 6 3.9809 -3.6393 -1.1227 23 6 5.2136 -4.0927 -0.7051 24 6 5.8626 -3.4600 0.3397 25 6 5.2817 -2.3674 0.9509 26 6 4.0468 -1.8968 0.5276 27 6 3.4849 -0.6787 1.2157 28 7 2.0180 -0.6885 1.2003 29 1 -0.3633 -1.0277 -0.0017 30 1 -0.3634 0.5123 0.8908 31 1 -0.3633 0.5153 -0.8891 32 1 3.0262 -0.3420 -1.5149 33 1 1.3472 -0.5557 -2.0761 34 1 1.8507 -4.0184 -1.8750 35 1 2.2825 -2.6835 -2.9703 36 1 0.6207 -1.2597 -3.8911 37 1 -1.7557 -0.8455 -4.3538 38 1 -5.0889 -4.9313 -2.4892 39 1 -2.8125 -3.7301 -1.3326 40 1 -0.4267 -4.1255 -0.9027 41 1 3.4745 -4.1344 -1.9382 42 1 5.6716 -4.9409 -1.1921 43 1 6.8232 -3.8205 0.6768 44 1 5.7925 -1.8745 1.7649 45 1 3.8414 0.2160 0.7052 46 1 3.8311 -0.6609 2.2491 47 1 1.6623 -1.6316 1.2459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398988786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:21 Heat of formation + Delta-G solvation = 62.769478 kcal Electronic energy + Delta-G solvation = -27446.443730 eV Core-core repulsion = 23979.505950 eV Total energy + Delta-G solvation = -3466.937780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.67986 -37.91178 -37.08980 -35.61736 -33.70048 -32.31430 -30.69209 -30.16405 -29.34479 -28.42532 -27.11149 -25.67478 -24.45250 -23.66503 -21.62666 -21.17369 -20.99625 -19.97194 -19.50868 -17.36737 -17.16202 -16.02553 -15.81447 -15.46666 -15.16798 -14.62087 -14.59646 -14.12485 -13.98958 -13.65028 -13.53649 -13.37857 -13.05476 -12.93441 -12.57072 -12.25332 -12.04581 -11.90521 -11.81072 -11.66870 -11.55227 -11.24851 -11.15120 -11.03002 -10.94533 -10.83056 -10.54971 -10.43226 -10.32944 -9.75963 -9.45412 -9.43514 -9.09955 -8.81819 -8.32827 -7.54503 -7.49150 -7.42444 -6.90887 -4.38928 1.39844 1.47028 2.66305 3.00735 3.03476 3.07083 3.12752 3.74046 3.87491 4.00732 4.51567 4.65270 4.80234 4.93636 5.03880 5.10079 5.24450 5.30863 5.42409 5.51011 5.53020 5.62361 5.67753 5.76325 5.77791 5.89873 5.92660 6.01227 6.05386 6.13812 6.23853 6.27313 6.29898 6.37261 6.44482 6.51651 6.59024 6.82032 6.87986 6.90595 6.99798 7.12753 7.20882 7.27673 7.33308 7.50053 7.54476 7.68663 7.81233 7.98586 8.06784 8.22915 8.57045 8.82319 8.91575 10.05043 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.020868 B = 0.003330 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.413952 B = 8405.834506 C = 8971.991556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.088 3.912 3 H 0.073 0.927 4 C 0.025 3.975 5 N -0.487 5.487 6 C 0.118 3.882 7 C -0.219 4.219 8 C -0.078 4.078 9 C -0.230 4.230 10 C 0.120 3.880 11 C -0.465 4.465 12 H 0.079 0.921 13 C 0.083 3.917 14 N -0.777 5.777 15 Si 0.901 3.099 16 H -0.266 1.266 17 H -0.261 1.261 18 H -0.278 1.278 19 C -0.174 4.174 20 C -0.070 4.070 21 C 0.132 3.868 22 C -0.179 4.179 23 C -0.096 4.096 24 C -0.158 4.158 25 C -0.091 4.091 26 C -0.149 4.149 27 C 0.101 3.899 28 N -0.666 5.666 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.282 0.718 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.914 3.120 5.054 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 H 0.091 0.909 4 C -0.101 4.101 5 N -0.200 5.200 6 C -0.007 4.007 7 C -0.221 4.221 8 C -0.097 4.097 9 C -0.249 4.249 10 C 0.117 3.883 11 C -0.493 4.493 12 H 0.097 0.903 13 C -0.137 4.137 14 N -0.401 5.401 15 Si 0.725 3.275 16 H -0.191 1.191 17 H -0.184 1.184 18 H -0.203 1.203 19 C -0.193 4.193 20 C -0.089 4.089 21 C 0.033 3.967 22 C -0.200 4.200 23 C -0.115 4.115 24 C -0.177 4.177 25 C -0.111 4.111 26 C -0.154 4.154 27 C -0.029 4.029 28 N -0.296 5.296 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.099 0.901 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.149 0.851 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 13.317 3.399 5.842 14.934 hybrid contribution -0.041 -0.649 -1.182 1.349 sum 13.276 2.749 4.660 14.336 Atomic orbital electron populations 1.21745 0.93126 1.03614 1.01125 1.21673 0.96691 0.96398 0.87574 0.90855 1.23092 1.00689 0.85473 1.00884 1.58494 1.20488 1.05514 1.35545 1.20982 0.94504 0.96495 0.88687 1.18676 0.91664 1.06465 1.05288 1.20312 0.95158 0.97101 0.97099 1.20852 0.92386 1.07385 1.04306 1.17565 0.92629 0.89446 0.88673 1.19613 0.91196 1.02831 1.35704 0.90276 1.25923 1.01496 0.94059 0.92237 1.69882 1.37171 1.01172 1.31857 0.86416 0.81422 0.79757 0.79911 1.19128 1.18435 1.20299 1.21131 0.94037 1.03387 1.00749 1.20395 0.93200 0.97841 0.97454 1.18864 0.88144 0.95386 0.94338 1.21663 0.96463 0.99918 1.01958 1.20945 0.94769 0.99104 0.96662 1.20921 1.00548 0.97753 0.98457 1.20951 0.94473 0.96348 0.99279 1.20313 0.96469 1.00488 0.98114 1.20902 0.88856 0.93866 0.99297 1.61301 1.05834 1.24372 1.38101 0.91096 0.92896 0.92308 0.94145 0.88289 0.90673 0.94656 0.90068 0.89235 0.90676 0.87360 0.89702 0.85097 0.86457 0.86610 0.86315 0.91284 0.90358 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.32 37.16 0.35 -1.83 16 2 C 0.09 1.24 2.94 -67.90 -0.20 1.04 16 3 H 0.07 0.96 7.98 -51.93 -0.41 0.54 16 4 C 0.03 0.38 4.68 -3.84 -0.02 0.36 16 5 N -0.49 -7.53 3.23 -172.52 -0.56 -8.09 16 6 C 0.12 1.97 3.76 -4.98 -0.02 1.95 16 7 C -0.22 -4.36 4.87 -104.33 -0.51 -4.87 16 8 C -0.08 -1.60 8.03 -39.66 -0.32 -1.92 16 9 C -0.23 -5.32 9.80 -38.87 -0.38 -5.70 16 10 C 0.12 3.03 5.58 -106.82 -0.60 2.43 16 11 C -0.47 -11.92 9.00 -37.74 -0.34 -12.26 16 12 H 0.08 1.97 7.97 -52.48 -0.42 1.55 16 13 C 0.08 2.03 4.95 -17.34 -0.09 1.94 16 14 N -0.78 -19.51 11.37 55.55 0.63 -18.88 16 15 Si 0.90 18.14 29.63 -169.99 -5.04 13.10 16 16 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 17 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 18 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 19 C -0.17 -4.30 8.75 -38.87 -0.34 -4.64 16 20 C -0.07 -1.54 9.69 -39.66 -0.38 -1.93 16 21 C 0.13 1.93 5.34 -83.84 -0.45 1.48 16 22 C -0.18 -2.47 8.77 -39.23 -0.34 -2.81 16 23 C -0.10 -1.15 10.04 -39.70 -0.40 -1.55 16 24 C -0.16 -1.77 10.04 -39.63 -0.40 -2.17 16 25 C -0.09 -1.06 9.56 -39.47 -0.38 -1.43 16 26 C -0.15 -1.97 5.47 -104.41 -0.57 -2.54 16 27 C 0.10 1.24 5.89 -5.05 -0.03 1.21 16 28 N -0.67 -9.35 6.55 -108.33 -0.71 -10.06 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 32 H 0.04 0.58 7.67 -51.93 -0.40 0.18 16 33 H 0.10 1.60 4.81 -51.93 -0.25 1.35 16 34 H 0.08 1.23 6.22 -51.93 -0.32 0.91 16 35 H 0.04 0.57 7.94 -51.93 -0.41 0.16 16 36 H 0.08 1.50 7.65 -52.49 -0.40 1.09 16 37 H 0.09 1.99 8.06 -52.49 -0.42 1.57 16 38 H 0.28 6.43 8.30 -40.82 -0.34 6.10 16 39 H 0.11 2.81 6.33 -52.49 -0.33 2.48 16 40 H 0.08 1.78 8.06 -52.48 -0.42 1.35 16 41 H 0.13 1.76 5.42 -52.48 -0.28 1.48 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.12 1.10 8.03 -52.48 -0.42 0.68 16 45 H 0.07 0.81 7.60 -51.93 -0.39 0.42 16 46 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 47 H 0.36 5.61 7.29 -39.29 -0.29 5.32 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -25.31 366.42 -12.40 -37.71 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -6.85 Total: 13.92 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: -5.41 Total: -33.23 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: -0.63 Total: -37.03 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.04 Total: 13.10 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -25.31 -12.40 -37.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398988786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.482 kcal (2) G-P(sol) polarization free energy of solvation -25.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds