Wall clock time and date at job start Tue Mar 31 2020 14:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.43119 * 2 1 4 4 C 1.52816 * 109.43271 * 240.09506 * 2 1 3 5 5 N 1.47035 * 107.91397 * 273.03423 * 4 2 1 6 6 C 1.46900 * 111.00184 * 141.28595 * 5 4 2 7 7 C 1.50695 * 109.47226 * 294.87429 * 6 5 4 8 8 C 1.38635 * 119.75215 * 96.61995 * 7 6 5 9 9 C 1.37624 * 120.24723 * 180.02562 * 8 7 6 10 10 C 1.40715 * 119.74572 * 359.97270 * 9 8 7 11 11 C 1.41394 * 120.24415 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99700 * 338.02191 * 11 10 9 13 13 C 1.39943 * 120.00258 * 158.02802 * 11 10 9 14 14 N 1.30826 * 119.99987 * 333.53888 * 13 11 10 15 15 Si 1.86803 * 119.99913 * 153.53559 * 13 11 10 16 16 H 1.48493 * 109.47144 * 265.01336 * 15 13 11 17 17 H 1.48501 * 109.47074 * 25.01424 * 15 13 11 18 18 H 1.48504 * 109.46984 * 145.01240 * 15 13 11 19 19 C 1.40720 * 119.51158 * 0.27417 * 10 9 8 20 20 C 1.37618 * 119.74170 * 359.49235 * 19 10 9 21 21 C 1.39600 * 112.83144 * 266.60348 * 5 4 2 22 22 C 1.39581 * 117.60928 * 230.67448 * 21 5 4 23 23 C 1.37827 * 120.36275 * 181.64403 * 22 21 5 24 24 C 1.38322 * 119.86851 * 0.08548 * 23 22 21 25 25 C 1.38007 * 119.94740 * 359.24478 * 24 23 22 26 26 C 1.38192 * 122.78001 * 51.11488 * 21 5 4 27 27 C 1.50766 * 122.53350 * 357.39390 * 26 21 5 28 28 N 1.46696 * 111.25307 * 29.21573 * 27 26 21 29 29 H 1.08998 * 109.46884 * 179.90319 * 1 2 3 30 30 H 1.08998 * 109.47385 * 299.90358 * 1 2 3 31 31 H 1.08999 * 109.46856 * 59.90388 * 1 2 3 32 32 H 1.08994 * 109.77500 * 153.42893 * 4 2 1 33 33 H 1.08997 * 109.81424 * 32.66246 * 4 2 1 34 34 H 1.08998 * 109.47483 * 174.86548 * 6 5 4 35 35 H 1.09002 * 109.46953 * 54.87095 * 6 5 4 36 36 H 1.08001 * 119.87491 * 359.97438 * 8 7 6 37 37 H 1.07998 * 120.12604 * 179.97438 * 9 8 7 38 38 H 0.97000 * 119.99662 * 180.02562 * 14 13 11 39 39 H 1.07999 * 120.12398 * 179.72651 * 19 10 9 40 40 H 1.08006 * 119.87165 * 180.22528 * 20 19 10 41 41 H 1.08005 * 119.81664 * 1.68981 * 22 21 5 42 42 H 1.07997 * 120.06683 * 180.02562 * 23 22 21 43 43 H 1.08000 * 120.02213 * 179.26349 * 24 23 22 44 44 H 1.08004 * 119.73844 * 180.14218 * 25 24 23 45 45 H 1.09004 * 109.12045 * 268.75686 * 27 26 21 46 46 H 1.09001 * 109.12126 * 149.67385 * 27 26 21 47 47 H 1.00900 * 110.99772 * 32.59826 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0279 0.0000 4 6 2.0384 -0.7185 -1.2492 5 7 2.1190 -2.1545 -0.9438 6 6 1.6954 -2.9623 -2.0952 7 6 0.2345 -2.7161 -2.3713 8 6 -0.1372 -1.7961 -3.3394 9 6 -1.4684 -1.5629 -3.5995 10 6 -2.4536 -2.2630 -2.8788 11 6 -3.8243 -2.0320 -3.1377 12 1 -4.1381 -1.1086 -3.6018 13 6 -4.7743 -2.9999 -2.7927 14 7 -4.4302 -4.2604 -2.7280 15 14 -6.5339 -2.4919 -2.4244 16 1 -6.7017 -2.3151 -0.9596 17 1 -6.8345 -1.2121 -3.1151 18 1 -7.4641 -3.5446 -2.9058 19 6 -2.0646 -3.1906 -1.8947 20 6 -0.7276 -3.4112 -1.6549 21 6 3.3836 -2.5433 -0.4980 22 6 3.9809 -3.6393 -1.1227 23 6 5.2136 -4.0927 -0.7051 24 6 5.8626 -3.4600 0.3397 25 6 5.2817 -2.3674 0.9509 26 6 4.0468 -1.8968 0.5276 27 6 3.4849 -0.6787 1.2157 28 7 2.0180 -0.6885 1.2003 29 1 -0.3633 -1.0277 -0.0017 30 1 -0.3634 0.5123 0.8908 31 1 -0.3633 0.5153 -0.8891 32 1 3.0262 -0.3420 -1.5149 33 1 1.3472 -0.5557 -2.0761 34 1 1.8507 -4.0184 -1.8750 35 1 2.2825 -2.6835 -2.9703 36 1 0.6207 -1.2597 -3.8911 37 1 -1.7557 -0.8455 -4.3538 38 1 -5.0889 -4.9313 -2.4892 39 1 -2.8125 -3.7301 -1.3326 40 1 -0.4267 -4.1255 -0.9027 41 1 3.4745 -4.1344 -1.9382 42 1 5.6716 -4.9409 -1.1921 43 1 6.8232 -3.8205 0.6768 44 1 5.7925 -1.8745 1.7649 45 1 3.8414 0.2160 0.7052 46 1 3.8311 -0.6609 2.2491 47 1 1.6623 -1.6316 1.2459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398988786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:20 Heat of formation + Delta-G solvation = 51.500499 kcal Electronic energy + Delta-G solvation = -27446.932390 eV Core-core repulsion = 23979.505950 eV Total energy + Delta-G solvation = -3467.426439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.77541 -39.49383 -38.24108 -36.89792 -35.42685 -33.36169 -32.30094 -31.33773 -31.02514 -29.65261 -28.58866 -26.92321 -25.74887 -24.93826 -22.99052 -22.81133 -22.09934 -21.33114 -20.83075 -19.21856 -18.20757 -17.21995 -17.12159 -16.87806 -16.42067 -15.97253 -15.66495 -15.62932 -15.50391 -14.94729 -14.78465 -14.59626 -14.28618 -14.15636 -13.97665 -13.82746 -13.55317 -13.26773 -13.09174 -12.97818 -12.84403 -12.75670 -12.70986 -12.35485 -12.15236 -12.11363 -12.08682 -11.80684 -11.54960 -11.43578 -11.23990 -10.94568 -10.56877 -9.79038 -9.39266 -9.32618 -9.23836 -8.72033 -8.59456 -6.29674 0.46346 0.50439 0.94572 1.16794 1.36905 1.49132 1.50949 2.18947 2.55707 2.79917 2.96601 3.52064 3.76495 3.85352 3.91848 3.98027 4.05409 4.15333 4.26479 4.30002 4.37470 4.48678 4.51552 4.54995 4.57521 4.63371 4.71016 4.73657 4.77675 4.86052 4.95929 5.02397 5.06495 5.10435 5.14096 5.16628 5.33689 5.40776 5.46690 5.47371 5.55299 5.67207 5.70952 5.90291 5.99907 6.01805 6.10845 6.20562 6.29353 6.39549 6.43408 6.51178 6.71159 6.94753 7.05673 8.26672 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.020868 B = 0.003330 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.413952 B = 8405.834506 C = 8971.991556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.094 3.906 3 H 0.091 0.909 4 C 0.029 3.971 5 N -0.492 5.492 6 C 0.126 3.874 7 C -0.197 4.197 8 C -0.073 4.073 9 C -0.242 4.242 10 C 0.092 3.908 11 C -0.505 4.505 12 H 0.074 0.926 13 C 0.045 3.955 14 N -0.812 5.812 15 Si 0.972 3.028 16 H -0.264 1.264 17 H -0.257 1.257 18 H -0.267 1.267 19 C -0.194 4.194 20 C -0.073 4.073 21 C 0.108 3.892 22 C -0.196 4.196 23 C -0.100 4.100 24 C -0.154 4.154 25 C -0.092 4.092 26 C -0.156 4.156 27 C 0.102 3.898 28 N -0.669 5.669 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.289 0.711 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.127 0.873 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.522 3.642 6.042 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.017 4.017 3 H 0.109 0.891 4 C -0.098 4.098 5 N -0.206 5.206 6 C 0.001 3.999 7 C -0.199 4.199 8 C -0.092 4.092 9 C -0.262 4.262 10 C 0.089 3.911 11 C -0.534 4.534 12 H 0.092 0.908 13 C -0.172 4.172 14 N -0.437 5.437 15 Si 0.793 3.207 16 H -0.189 1.189 17 H -0.181 1.181 18 H -0.192 1.192 19 C -0.214 4.214 20 C -0.092 4.092 21 C 0.009 3.991 22 C -0.216 4.216 23 C -0.119 4.119 24 C -0.173 4.173 25 C -0.111 4.111 26 C -0.161 4.161 27 C -0.027 4.027 28 N -0.298 5.298 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.163 0.837 45 H 0.096 0.904 46 H 0.112 0.888 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 15.954 3.926 6.831 17.794 hybrid contribution -0.571 -0.833 -1.448 1.765 sum 15.383 3.093 5.383 16.589 Atomic orbital electron populations 1.21632 0.94696 1.01380 1.01021 1.21627 0.95226 0.97269 0.87577 0.89100 1.23051 1.00674 0.85477 1.00569 1.58394 1.21956 1.05450 1.34763 1.20840 0.92008 0.97176 0.89897 1.18990 0.93341 1.04250 1.03278 1.20564 0.94751 0.96877 0.97007 1.21026 0.93274 1.07505 1.04399 1.17839 0.93363 0.90415 0.89466 1.19811 0.92202 1.03363 1.38015 0.90808 1.26694 1.05411 0.93691 0.91437 1.69916 1.38823 1.02126 1.32847 0.85350 0.76287 0.79519 0.79570 1.18870 1.18099 1.19166 1.21038 0.94751 1.04203 1.01385 1.20537 0.92670 0.98199 0.97822 1.18985 0.88057 0.96474 0.95541 1.21757 0.97460 1.00065 1.02349 1.21243 0.94121 0.99639 0.96892 1.21307 1.01383 0.97071 0.97522 1.21288 0.93824 0.96354 0.99654 1.20471 0.97100 1.00711 0.97804 1.20985 0.87495 0.93968 1.00298 1.61323 1.07204 1.23542 1.37694 0.94261 0.92277 0.93125 0.93260 0.89864 0.90314 0.93690 0.87291 0.88953 0.90012 0.89497 0.88899 0.85523 0.84445 0.83842 0.83705 0.90431 0.88777 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.32 71.98 0.67 -3.44 16 2 C 0.09 2.54 2.94 44.89 0.13 2.67 16 3 H 0.09 2.17 7.98 -2.39 -0.02 2.15 16 4 C 0.03 0.83 4.68 86.22 0.40 1.23 16 5 N -0.49 -14.66 3.23 -699.73 -2.26 -16.92 16 6 C 0.13 4.08 3.76 85.56 0.32 4.40 16 7 C -0.20 -7.84 4.87 -19.68 -0.10 -7.94 16 8 C -0.07 -3.01 8.03 22.22 0.18 -2.83 16 9 C -0.24 -11.54 9.80 22.73 0.22 -11.32 16 10 C 0.09 4.86 5.58 -21.29 -0.12 4.75 16 11 C -0.51 -27.21 9.00 23.46 0.21 -26.99 16 12 H 0.07 3.88 7.97 -2.91 -0.02 3.85 16 13 C 0.04 2.26 4.95 85.26 0.42 2.69 16 14 N -0.81 -42.52 11.37 21.83 0.25 -42.28 16 15 Si 0.97 38.28 29.63 68.60 2.03 40.31 16 16 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 17 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 18 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 19 C -0.19 -10.10 8.75 22.73 0.20 -9.90 16 20 C -0.07 -3.33 9.69 22.22 0.22 -3.11 16 21 C 0.11 2.95 5.34 38.22 0.20 3.16 16 22 C -0.20 -5.00 8.77 22.50 0.20 -4.81 16 23 C -0.10 -2.11 10.04 22.19 0.22 -1.88 16 24 C -0.15 -2.86 10.04 22.23 0.22 -2.63 16 25 C -0.09 -1.79 9.56 22.34 0.21 -1.58 16 26 C -0.16 -3.70 5.47 -19.73 -0.11 -3.81 16 27 C 0.10 2.22 5.89 85.62 0.50 2.73 16 28 N -0.67 -17.72 6.55 -496.65 -3.25 -20.97 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.65 8.12 -2.39 -0.02 1.63 16 32 H 0.05 1.30 7.67 -2.39 -0.02 1.28 16 33 H 0.08 2.60 4.81 -2.39 -0.01 2.59 16 34 H 0.08 2.51 6.22 -2.39 -0.01 2.50 16 35 H 0.04 1.37 7.94 -2.39 -0.02 1.36 16 36 H 0.11 3.85 7.65 -2.91 -0.02 3.83 16 37 H 0.09 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 39 H 0.09 4.81 6.33 -2.91 -0.02 4.79 16 40 H 0.09 3.98 8.06 -2.91 -0.02 3.96 16 41 H 0.13 3.24 5.42 -2.91 -0.02 3.22 16 42 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 43 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 44 H 0.15 2.01 8.03 -2.91 -0.02 1.99 16 45 H 0.08 1.57 7.60 -2.38 -0.02 1.55 16 46 H 0.09 1.76 8.01 -2.39 -0.02 1.74 16 47 H 0.35 10.59 7.29 -89.69 -0.65 9.93 16 Total: -1.00 -56.96 366.42 1.31 -55.65 By element: Atomic # 1 Polarization: 42.51 SS G_CDS: 0.32 Total: 42.83 kcal Atomic # 6 Polarization: -62.84 SS G_CDS: 4.22 Total: -58.63 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -5.26 Total: -80.17 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -56.96 1.31 -55.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398988786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.147 kcal (2) G-P(sol) polarization free energy of solvation -56.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds