Wall clock time and date at job start Tue Mar 31 2020 14:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.67454 * 2 1 4 4 N 1.47144 * 109.68162 * 120.55353 * 2 1 3 5 5 C 1.34783 * 120.98080 * 249.16698 * 4 2 1 6 6 O 1.21839 * 120.00189 * 0.02562 * 5 4 2 7 7 N 1.33834 * 119.99813 * 179.97438 * 5 4 2 8 8 C 1.32932 * 119.99900 * 179.97438 * 7 5 4 9 9 C 1.41208 * 126.37903 * 0.03501 * 8 7 5 10 10 C 1.34956 * 108.24682 * 179.97438 * 9 8 7 11 11 N 1.36455 * 108.94703 * 359.97438 * 10 9 8 12 12 C 1.46495 * 125.85413 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.47197 * 84.97999 * 12 11 10 14 14 H 1.08001 * 119.99656 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00238 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00046 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99779 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47410 * 90.00051 * 17 15 13 19 19 H 1.48503 * 109.46761 * 210.00160 * 17 15 13 20 20 H 1.48499 * 109.47375 * 330.00167 * 17 15 13 21 21 N 1.37422 * 126.37815 * 179.71046 * 8 7 5 22 22 H 0.97001 * 126.36667 * 0.03543 * 21 8 7 23 23 C 1.47154 * 118.03825 * 69.19040 * 4 2 1 24 24 C 1.53295 * 108.38156 * 50.53490 * 23 4 2 25 25 O 1.42960 * 109.22235 * 307.69858 * 24 23 4 26 26 C 1.42959 * 114.16910 * 62.58321 * 25 24 23 27 27 C 1.53000 * 109.51222 * 177.49329 * 26 25 24 28 28 C 1.53004 * 109.50990 * 57.34249 * 26 25 24 29 29 H 1.09001 * 109.47002 * 180.51736 * 1 2 3 30 30 H 1.08993 * 109.46955 * 300.52173 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.52002 * 1 2 3 32 32 H 1.08003 * 125.88000 * 359.97438 * 9 8 7 33 33 H 1.07994 * 125.52659 * 180.02562 * 10 9 8 34 34 H 1.09000 * 109.47158 * 204.97844 * 12 11 10 35 35 H 1.09000 * 109.47357 * 324.98119 * 12 11 10 36 36 H 0.97000 * 119.99760 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.68100 * 290.81096 * 23 4 2 38 38 H 1.09002 * 109.71063 * 170.27738 * 23 4 2 39 39 H 1.09002 * 109.50738 * 187.77900 * 24 23 4 40 40 H 1.08993 * 109.55248 * 67.64914 * 24 23 4 41 41 H 1.09004 * 109.46706 * 179.74565 * 27 26 25 42 42 H 1.08997 * 109.47264 * 299.74578 * 27 26 25 43 43 H 1.09003 * 109.46998 * 59.75205 * 27 26 25 44 44 H 1.08997 * 109.46712 * 300.24841 * 28 26 25 45 45 H 1.08991 * 109.47339 * 60.25648 * 28 26 25 46 46 H 1.09001 * 109.46748 * 180.25799 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 7 2.0256 -0.7043 1.1931 5 6 2.6463 -0.0360 2.1855 6 8 2.8036 1.1694 2.1028 7 7 3.0888 -0.6963 3.2622 8 6 3.7013 -0.0372 4.2407 9 6 3.9551 1.3512 4.2846 10 6 4.5944 1.6276 5.4405 11 7 4.7612 0.4694 6.1425 12 6 5.4105 0.3443 7.4497 13 6 4.4084 0.6317 8.5380 14 1 3.3898 0.8828 8.2814 15 6 4.7921 0.5750 9.8611 16 7 3.9177 0.8262 10.8107 17 14 6.5541 0.1413 10.3047 18 1 7.3654 1.3828 10.3805 19 1 6.5782 -0.5469 11.6204 20 1 7.1195 -0.7567 9.2659 21 7 4.2001 -0.5793 5.4009 22 1 4.1711 -1.5142 5.6578 23 6 1.8241 -2.1599 1.2706 24 6 2.3262 -2.7876 -0.0347 25 8 1.7169 -2.1204 -1.1426 26 6 2.0464 -0.7330 -1.2435 27 6 1.3919 -0.1419 -2.4937 28 6 3.5653 -0.5738 -1.3366 29 1 -0.3633 -1.0276 0.0093 30 1 -0.3633 0.5219 0.8852 31 1 -0.3633 0.5057 -0.8946 32 1 3.6841 2.0685 3.5240 33 1 4.9203 2.6068 5.7587 34 1 5.7957 -0.6684 7.5687 35 1 6.2333 1.0562 7.5164 36 1 4.1876 0.7860 11.7415 37 1 0.7638 -2.3774 1.3986 38 1 2.3860 -2.5645 2.1125 39 1 2.0611 -3.8447 -0.0558 40 1 3.4092 -2.6825 -0.0971 41 1 1.6398 0.9170 -2.5675 42 1 1.7595 -0.6635 -3.3774 43 1 0.3101 -0.2579 -2.4269 44 1 4.0301 -0.9973 -0.4463 45 1 3.9316 -1.0952 -2.2209 46 1 3.8159 0.4845 -1.4089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408349075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:27 Heat of formation + Delta-G solvation = 42.938199 kcal Electronic energy + Delta-G solvation = -27883.560516 eV Core-core repulsion = 24004.913525 eV Total energy + Delta-G solvation = -3878.646991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.91443 -40.40137 -38.25465 -34.85460 -34.13391 -34.09082 -32.90454 -31.12661 -31.01949 -29.97731 -28.59991 -27.48630 -26.90534 -23.91221 -23.21593 -22.68275 -21.61669 -21.29016 -19.69057 -18.59137 -17.43966 -17.20878 -16.53156 -16.45128 -15.74034 -15.52261 -15.01220 -14.96054 -14.86284 -14.33422 -14.25346 -13.96453 -13.43717 -13.33778 -13.10920 -12.96411 -12.81718 -12.66725 -12.35756 -12.33892 -12.22178 -12.02027 -11.85958 -11.59050 -11.52758 -11.21231 -11.05409 -11.01040 -10.71497 -10.22529 -10.08570 -9.89513 -9.72792 -9.67952 -9.10760 -9.06171 -8.37530 -8.16015 -6.88479 -6.53100 -4.61703 1.69028 1.96550 2.94838 2.99236 3.05767 3.08521 3.26047 3.69558 3.95850 4.28044 4.51207 4.62683 4.75201 4.79270 4.87643 5.07782 5.18085 5.21816 5.28174 5.42515 5.48136 5.50552 5.55124 5.57201 5.69553 5.70193 5.75870 5.80687 5.88057 5.93287 5.95635 6.04187 6.09609 6.14451 6.21912 6.29830 6.31502 6.64527 6.91963 7.04273 7.19051 7.21283 7.51709 7.68993 7.97756 8.18086 8.39186 8.50828 8.99247 9.52682 10.58475 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030862 B = 0.002496 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.047903 B =11215.490874 C =11314.668854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.133 3.867 3 H 0.103 0.897 4 N -0.607 5.607 5 C 0.692 3.308 6 O -0.628 6.628 7 N -0.709 5.709 8 C 0.489 3.511 9 C -0.330 4.330 10 C 0.164 3.836 11 N -0.346 5.346 12 C 0.230 3.770 13 C -0.565 4.565 14 H 0.085 0.915 15 C 0.083 3.917 16 N -0.876 5.876 17 Si 0.875 3.125 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.265 1.265 21 N -0.470 5.470 22 H 0.444 0.556 23 C 0.091 3.909 24 C 0.044 3.956 25 O -0.374 6.374 26 C 0.104 3.896 27 C -0.138 4.138 28 C -0.173 4.173 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.184 0.816 33 H 0.188 0.812 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.273 0.727 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -3.945 -19.161 19.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.121 0.879 4 N -0.343 5.343 5 C 0.393 3.607 6 O -0.511 6.511 7 N -0.473 5.473 8 C 0.236 3.764 9 C -0.362 4.362 10 C 0.021 3.979 11 N -0.132 5.132 12 C 0.112 3.888 13 C -0.603 4.603 14 H 0.103 0.897 15 C -0.123 4.123 16 N -0.512 5.512 17 Si 0.700 3.300 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.190 1.190 21 N -0.193 5.193 22 H 0.292 0.708 23 C -0.033 4.033 24 C -0.034 4.034 25 O -0.293 6.293 26 C 0.064 3.936 27 C -0.195 4.195 28 C -0.230 4.230 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.201 0.799 33 H 0.205 0.795 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.066 -4.353 -18.811 19.308 hybrid contribution 0.989 -0.016 0.951 1.372 sum 1.055 -4.368 -17.860 18.417 Atomic orbital electron populations 1.22108 0.95146 1.02424 1.01922 1.21554 0.94194 0.97706 0.83773 0.87934 1.46846 1.61211 1.07130 1.19103 1.16488 0.78180 0.83655 0.82385 1.90719 1.63183 1.15511 1.81639 1.68007 1.35306 1.37879 1.06077 1.18704 0.84882 0.88928 0.83914 1.22414 1.15007 0.96547 1.02264 1.22806 0.94153 0.90110 0.90881 1.47425 1.50095 0.98997 1.16660 1.20307 0.93489 0.99545 0.75490 1.21265 0.98269 1.51377 0.89355 0.89672 1.24833 0.97745 0.93858 0.95889 1.69859 1.34569 1.46155 1.00575 0.86890 0.84425 0.79534 0.79133 1.19345 1.20295 1.18959 1.44355 1.54889 1.05338 1.14761 0.70850 1.22115 1.01288 0.81173 0.98753 1.23029 0.97642 0.96549 0.86152 1.87928 1.71675 1.21646 1.48094 1.21851 0.94381 0.82321 0.95026 1.21816 1.01518 1.00522 0.95686 1.22325 0.95624 1.02754 1.02312 0.92072 0.92447 0.91550 0.79889 0.79511 0.93419 0.92224 0.91708 0.92193 0.87486 0.88382 0.92623 0.90942 0.91796 0.91247 0.91815 0.92134 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.68 37.16 0.32 -1.59 16 2 C 0.13 1.82 2.23 -67.42 -0.15 1.67 16 3 H 0.10 1.57 7.07 -51.93 -0.37 1.20 16 4 N -0.61 -9.60 2.23 -170.66 -0.38 -9.98 16 5 C 0.69 13.40 8.23 -87.75 -0.72 12.68 16 6 O -0.63 -13.44 12.73 5.06 0.06 -13.37 16 7 N -0.71 -13.55 9.11 -15.79 -0.14 -13.70 16 8 C 0.49 9.25 8.07 -155.29 -1.25 7.99 16 9 C -0.33 -6.03 9.52 -39.62 -0.38 -6.41 16 10 C 0.16 2.70 11.45 -16.66 -0.19 2.51 16 11 N -0.35 -6.16 3.63 -62.25 -0.23 -6.39 16 12 C 0.23 4.37 5.26 -5.19 -0.03 4.34 16 13 C -0.56 -13.62 9.94 -34.44 -0.34 -13.97 16 14 H 0.09 2.37 8.06 -52.49 -0.42 1.94 16 15 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.88 -23.91 13.96 55.43 0.77 -23.14 16 17 Si 0.87 17.80 27.47 -169.99 -4.67 13.13 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.26 -5.00 6.54 56.52 0.37 -4.63 16 21 N -0.47 -8.09 7.38 31.33 0.23 -7.86 16 22 H 0.44 6.64 8.96 -182.55 -1.64 5.01 16 23 C 0.09 1.21 6.23 -3.53 -0.02 1.18 16 24 C 0.04 0.50 6.60 37.31 0.25 0.74 16 25 O -0.37 -4.61 9.87 -35.23 -0.35 -4.96 16 26 C 0.10 1.22 0.81 -90.46 -0.07 1.15 16 27 C -0.14 -1.26 8.29 37.16 0.31 -0.95 16 28 C -0.17 -2.01 8.10 37.16 0.30 -1.71 16 29 H 0.06 0.74 7.20 -51.93 -0.37 0.37 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.65 6.36 -51.93 -0.33 0.32 16 32 H 0.18 3.56 5.77 -52.48 -0.30 3.25 16 33 H 0.19 2.40 8.06 -52.49 -0.42 1.97 16 34 H 0.05 0.87 7.20 -51.93 -0.37 0.50 16 35 H 0.06 1.04 7.57 -51.93 -0.39 0.64 16 36 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.06 0.77 7.64 -51.93 -0.40 0.37 16 38 H 0.11 1.50 6.93 -51.93 -0.36 1.14 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.65 6.25 -51.93 -0.32 0.33 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.60 6.35 -51.93 -0.33 0.27 16 44 H 0.06 0.86 6.11 -51.93 -0.32 0.54 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -30.73 362.72 -9.37 -40.10 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -8.05 Total: 11.10 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -2.08 Total: 9.61 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: 0.25 Total: -61.06 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.28 Total: -18.34 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -4.67 Total: 13.13 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.73 -9.37 -40.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408349075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.035 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds