Wall clock time and date at job start Tue Mar 31 2020 14:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.67454 * 2 1 4 4 N 1.47144 * 109.68162 * 120.55353 * 2 1 3 5 5 C 1.34783 * 120.98080 * 249.16698 * 4 2 1 6 6 O 1.21839 * 120.00189 * 0.02562 * 5 4 2 7 7 N 1.33834 * 119.99813 * 179.97438 * 5 4 2 8 8 C 1.32932 * 119.99900 * 179.97438 * 7 5 4 9 9 C 1.41208 * 126.37903 * 0.03501 * 8 7 5 10 10 C 1.34956 * 108.24682 * 179.97438 * 9 8 7 11 11 N 1.36455 * 108.94703 * 359.97438 * 10 9 8 12 12 C 1.46495 * 125.85413 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.47197 * 84.97999 * 12 11 10 14 14 H 1.08001 * 119.99656 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00238 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00046 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99779 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47410 * 90.00051 * 17 15 13 19 19 H 1.48503 * 109.46761 * 210.00160 * 17 15 13 20 20 H 1.48499 * 109.47375 * 330.00167 * 17 15 13 21 21 N 1.37422 * 126.37815 * 179.71046 * 8 7 5 22 22 H 0.97001 * 126.36667 * 0.03543 * 21 8 7 23 23 C 1.47154 * 118.03825 * 69.19040 * 4 2 1 24 24 C 1.53295 * 108.38156 * 50.53490 * 23 4 2 25 25 O 1.42960 * 109.22235 * 307.69858 * 24 23 4 26 26 C 1.42959 * 114.16910 * 62.58321 * 25 24 23 27 27 C 1.53000 * 109.51222 * 177.49329 * 26 25 24 28 28 C 1.53004 * 109.50990 * 57.34249 * 26 25 24 29 29 H 1.09001 * 109.47002 * 180.51736 * 1 2 3 30 30 H 1.08993 * 109.46955 * 300.52173 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.52002 * 1 2 3 32 32 H 1.08003 * 125.88000 * 359.97438 * 9 8 7 33 33 H 1.07994 * 125.52659 * 180.02562 * 10 9 8 34 34 H 1.09000 * 109.47158 * 204.97844 * 12 11 10 35 35 H 1.09000 * 109.47357 * 324.98119 * 12 11 10 36 36 H 0.97000 * 119.99760 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.68100 * 290.81096 * 23 4 2 38 38 H 1.09002 * 109.71063 * 170.27738 * 23 4 2 39 39 H 1.09002 * 109.50738 * 187.77900 * 24 23 4 40 40 H 1.08993 * 109.55248 * 67.64914 * 24 23 4 41 41 H 1.09004 * 109.46706 * 179.74565 * 27 26 25 42 42 H 1.08997 * 109.47264 * 299.74578 * 27 26 25 43 43 H 1.09003 * 109.46998 * 59.75205 * 27 26 25 44 44 H 1.08997 * 109.46712 * 300.24841 * 28 26 25 45 45 H 1.08991 * 109.47339 * 60.25648 * 28 26 25 46 46 H 1.09001 * 109.46748 * 180.25799 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 7 2.0256 -0.7043 1.1931 5 6 2.6463 -0.0360 2.1855 6 8 2.8036 1.1694 2.1028 7 7 3.0888 -0.6963 3.2622 8 6 3.7013 -0.0372 4.2407 9 6 3.9551 1.3512 4.2846 10 6 4.5944 1.6276 5.4405 11 7 4.7612 0.4694 6.1425 12 6 5.4105 0.3443 7.4497 13 6 4.4084 0.6317 8.5380 14 1 3.3898 0.8828 8.2814 15 6 4.7921 0.5750 9.8611 16 7 3.9177 0.8262 10.8107 17 14 6.5541 0.1413 10.3047 18 1 7.3654 1.3828 10.3805 19 1 6.5782 -0.5469 11.6204 20 1 7.1195 -0.7567 9.2659 21 7 4.2001 -0.5793 5.4009 22 1 4.1711 -1.5142 5.6578 23 6 1.8241 -2.1599 1.2706 24 6 2.3262 -2.7876 -0.0347 25 8 1.7169 -2.1204 -1.1426 26 6 2.0464 -0.7330 -1.2435 27 6 1.3919 -0.1419 -2.4937 28 6 3.5653 -0.5738 -1.3366 29 1 -0.3633 -1.0276 0.0093 30 1 -0.3633 0.5219 0.8852 31 1 -0.3633 0.5057 -0.8946 32 1 3.6841 2.0685 3.5240 33 1 4.9203 2.6068 5.7587 34 1 5.7957 -0.6684 7.5687 35 1 6.2333 1.0562 7.5164 36 1 4.1876 0.7860 11.7415 37 1 0.7638 -2.3774 1.3986 38 1 2.3860 -2.5645 2.1125 39 1 2.0611 -3.8447 -0.0558 40 1 3.4092 -2.6825 -0.0971 41 1 1.6398 0.9170 -2.5675 42 1 1.7595 -0.6635 -3.3774 43 1 0.3101 -0.2579 -2.4269 44 1 4.0301 -0.9973 -0.4463 45 1 3.9316 -1.0952 -2.2209 46 1 3.8159 0.4845 -1.4089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408349075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:26 Heat of formation + Delta-G solvation = 22.883747 kcal Electronic energy + Delta-G solvation = -27884.430143 eV Core-core repulsion = 24004.913525 eV Total energy + Delta-G solvation = -3879.516618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.31540 -41.52250 -39.58190 -36.15338 -35.57903 -35.16700 -34.54229 -32.58182 -32.52617 -31.00528 -29.74916 -28.71743 -28.10409 -25.17880 -24.28247 -24.14646 -22.96642 -22.66864 -20.94278 -19.69574 -19.26543 -18.60150 -17.81368 -17.72040 -16.86206 -16.75043 -16.51161 -16.26558 -15.96508 -15.69370 -15.46810 -15.34727 -14.77234 -14.51338 -14.42677 -14.33526 -14.18740 -13.85044 -13.71312 -13.32449 -13.21588 -13.06584 -12.94852 -12.73739 -12.62811 -12.56843 -12.25739 -12.22124 -11.92443 -11.84972 -11.31660 -11.27807 -11.12131 -10.92077 -10.91276 -10.52771 -9.87373 -9.39402 -8.42924 -8.32146 -6.56476 0.26454 0.57531 1.39124 1.40348 1.48991 1.65260 2.04193 2.25756 2.77945 2.86535 2.96159 3.10050 3.60095 3.84604 3.89795 3.96388 4.08335 4.17216 4.25376 4.28248 4.37482 4.40791 4.50174 4.57220 4.60731 4.66586 4.73708 4.78362 4.82107 4.86196 4.90523 4.95516 5.02406 5.04079 5.15084 5.19360 5.22888 5.26450 5.39664 5.79302 5.85351 5.99928 6.10064 6.24844 6.38421 6.53198 6.79638 6.96478 7.09961 8.06516 8.73831 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030862 B = 0.002496 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.047903 B =11215.490874 C =11314.668854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.126 3.874 3 H 0.082 0.918 4 N -0.606 5.606 5 C 0.677 3.323 6 O -0.658 6.658 7 N -0.714 5.714 8 C 0.473 3.527 9 C -0.346 4.346 10 C 0.179 3.821 11 N -0.350 5.350 12 C 0.235 3.765 13 C -0.566 4.566 14 H 0.032 0.968 15 C 0.022 3.978 16 N -0.937 5.937 17 Si 0.950 3.050 18 H -0.256 1.256 19 H -0.288 1.288 20 H -0.232 1.232 21 N -0.466 5.466 22 H 0.453 0.547 23 C 0.088 3.912 24 C 0.049 3.951 25 O -0.377 6.377 26 C 0.106 3.894 27 C -0.135 4.135 28 C -0.168 4.168 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.092 0.908 32 H 0.171 0.829 33 H 0.225 0.775 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.273 0.727 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.040 0.960 45 H 0.077 0.923 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 -4.877 -20.691 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 H 0.100 0.900 4 N -0.341 5.341 5 C 0.378 3.622 6 O -0.543 6.543 7 N -0.479 5.479 8 C 0.219 3.781 9 C -0.379 4.379 10 C 0.036 3.964 11 N -0.136 5.136 12 C 0.117 3.883 13 C -0.604 4.604 14 H 0.050 0.950 15 C -0.178 4.178 16 N -0.575 5.575 17 Si 0.772 3.228 18 H -0.180 1.180 19 H -0.214 1.214 20 H -0.155 1.155 21 N -0.190 5.190 22 H 0.302 0.698 23 C -0.035 4.035 24 C -0.028 4.028 25 O -0.296 6.296 26 C 0.066 3.934 27 C -0.192 4.192 28 C -0.226 4.226 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.188 0.812 33 H 0.241 0.759 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.145 0.855 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.828 -5.321 -20.396 21.157 hybrid contribution 0.320 0.298 1.405 1.472 sum 2.148 -5.022 -18.990 19.760 Atomic orbital electron populations 1.22055 0.93869 1.02584 1.02279 1.21757 0.95176 0.96904 0.84002 0.89997 1.46985 1.60157 1.08216 1.18761 1.16833 0.78656 0.83606 0.83106 1.90688 1.64561 1.16705 1.82357 1.68062 1.35585 1.37957 1.06293 1.18928 0.85191 0.89558 0.84398 1.22303 1.16300 0.96281 1.03019 1.23344 0.92422 0.90979 0.89686 1.47429 1.50126 0.99512 1.16539 1.20246 0.92603 1.01372 0.74068 1.21441 0.97174 1.50580 0.91225 0.95000 1.25851 1.02885 0.93521 0.95584 1.70040 1.37602 1.48677 1.01136 0.85692 0.78078 0.80093 0.78957 1.18046 1.21441 1.15479 1.44346 1.54662 1.05717 1.14248 0.69840 1.22245 1.01571 0.79788 0.99873 1.23070 0.97324 0.97726 0.84691 1.87935 1.71792 1.21758 1.48114 1.21922 0.94454 0.82025 0.94981 1.21841 1.01721 1.01146 0.94525 1.22287 0.95654 1.02703 1.01925 0.91835 0.94440 0.88899 0.81206 0.75878 0.91482 0.88862 0.91782 0.91639 0.88405 0.85501 0.93027 0.89869 0.90605 0.90559 0.94088 0.90443 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.68 71.98 0.62 -2.91 16 2 C 0.13 3.45 2.23 44.97 0.10 3.55 16 3 H 0.08 2.58 7.07 -2.39 -0.02 2.56 16 4 N -0.61 -19.48 2.23 -811.99 -1.81 -21.30 16 5 C 0.68 27.09 8.23 179.35 1.48 28.57 16 6 O -0.66 -29.35 12.73 -4.79 -0.06 -29.41 16 7 N -0.71 -27.99 9.11 -322.54 -2.94 -30.93 16 8 C 0.47 18.09 8.07 133.95 1.08 19.17 16 9 C -0.35 -12.81 9.52 22.24 0.21 -12.59 16 10 C 0.18 5.66 11.45 83.22 0.95 6.61 16 11 N -0.35 -11.95 3.63 -350.85 -1.28 -13.23 16 12 C 0.24 8.32 5.26 85.64 0.45 8.77 16 13 C -0.57 -27.23 9.94 25.60 0.25 -26.97 16 14 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 15 C 0.02 1.10 5.47 84.65 0.46 1.56 16 16 N -0.94 -52.48 13.96 21.45 0.30 -52.18 16 17 Si 0.95 35.12 27.47 68.60 1.88 37.00 16 18 H -0.26 -8.95 7.11 99.48 0.71 -8.25 16 19 H -0.29 -11.12 7.11 99.48 0.71 -10.42 16 20 H -0.23 -7.29 6.54 99.48 0.65 -6.64 16 21 N -0.47 -15.78 7.38 -54.79 -0.40 -16.18 16 22 H 0.45 13.26 8.96 -213.28 -1.91 11.35 16 23 C 0.09 2.33 6.23 86.35 0.54 2.86 16 24 C 0.05 1.04 6.60 72.08 0.48 1.52 16 25 O -0.38 -8.54 9.87 -148.98 -1.47 -10.02 16 26 C 0.11 2.34 0.81 -10.69 -0.01 2.34 16 27 C -0.14 -2.14 8.29 71.98 0.60 -1.54 16 28 C -0.17 -3.79 8.10 71.98 0.58 -3.20 16 29 H 0.06 1.47 7.20 -2.39 -0.02 1.45 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 1.67 6.36 -2.39 -0.02 1.65 16 32 H 0.17 6.83 5.77 -2.91 -0.02 6.81 16 33 H 0.22 5.17 8.06 -2.91 -0.02 5.14 16 34 H 0.07 2.18 7.20 -2.39 -0.02 2.17 16 35 H 0.09 2.80 7.57 -2.39 -0.02 2.78 16 36 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 37 H 0.07 1.64 7.64 -2.39 -0.02 1.62 16 38 H 0.10 2.75 6.93 -2.39 -0.02 2.74 16 39 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.05 1.15 6.25 -2.39 -0.01 1.14 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 1.11 6.35 -2.39 -0.02 1.10 16 44 H 0.04 1.10 6.11 -2.39 -0.01 1.09 16 45 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 46 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -70.03 362.72 1.06 -68.97 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: -0.96 Total: 39.55 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: 7.80 Total: 27.72 kcal Atomic # 7 Polarization: -127.69 SS G_CDS: -6.13 Total: -133.82 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -1.53 Total: -39.42 kcal Atomic # 14 Polarization: 35.12 SS G_CDS: 1.88 Total: 37.00 kcal Total: -70.03 1.06 -68.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408349075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.853 kcal (2) G-P(sol) polarization free energy of solvation -70.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds