Wall clock time and date at job start Tue Mar 31 2020 14:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.70786 * 2 1 4 4 N 1.47149 * 109.68017 * 239.46855 * 2 1 3 5 5 C 1.34777 * 120.98760 * 110.83606 * 4 2 1 6 6 O 1.21843 * 119.99618 * 359.71071 * 5 4 2 7 7 N 1.33831 * 120.00272 * 179.71855 * 5 4 2 8 8 C 1.32933 * 120.00227 * 179.97438 * 7 5 4 9 9 C 1.41209 * 126.37615 * 359.97245 * 8 7 5 10 10 C 1.34953 * 108.24488 * 180.02562 * 9 8 7 11 11 N 1.36451 * 108.94958 * 359.97438 * 10 9 8 12 12 C 1.46502 * 125.85801 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46622 * 85.02614 * 12 11 10 14 14 H 1.08005 * 120.00138 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99722 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00073 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46845 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47399 * 119.99815 * 17 15 13 20 20 H 1.48498 * 109.47295 * 240.00422 * 17 15 13 21 21 N 1.37422 * 126.38375 * 180.28966 * 8 7 5 22 22 H 0.97002 * 126.35952 * 359.97438 * 21 8 7 23 23 C 1.47152 * 118.03566 * 290.55475 * 4 2 1 24 24 C 1.53303 * 108.38461 * 309.72045 * 23 4 2 25 25 O 1.42957 * 109.22249 * 52.29938 * 24 23 4 26 26 C 1.42970 * 114.16645 * 297.41739 * 25 24 23 27 27 C 1.52998 * 109.51388 * 182.50269 * 26 25 24 28 28 C 1.52999 * 109.51212 * 302.60875 * 26 25 24 29 29 H 1.09000 * 109.47130 * 180.54096 * 1 2 3 30 30 H 1.09005 * 109.46604 * 300.53428 * 1 2 3 31 31 H 1.08994 * 109.47343 * 60.53281 * 1 2 3 32 32 H 1.08002 * 125.88144 * 359.95974 * 9 8 7 33 33 H 1.08000 * 125.52830 * 180.02562 * 10 9 8 34 34 H 1.08996 * 109.47065 * 325.03296 * 12 11 10 35 35 H 1.08994 * 109.47523 * 205.02772 * 12 11 10 36 36 H 0.97000 * 119.99651 * 0.02562 * 16 15 13 37 37 H 1.09002 * 109.68126 * 69.43764 * 23 4 2 38 38 H 1.08995 * 109.68911 * 189.96013 * 23 4 2 39 39 H 1.09001 * 109.51110 * 172.21819 * 24 23 4 40 40 H 1.08996 * 109.50817 * 292.37434 * 24 23 4 41 41 H 1.09006 * 109.46419 * 60.00411 * 27 26 25 42 42 H 1.08998 * 109.46894 * 179.97438 * 27 26 25 43 43 H 1.08997 * 109.47689 * 300.00664 * 27 26 25 44 44 H 1.09002 * 109.46680 * 60.00136 * 28 26 25 45 45 H 1.08999 * 109.46868 * 179.97438 * 28 26 25 46 46 H 1.08992 * 109.47015 * 300.00104 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 7 2.0255 -0.7039 -1.1934 5 6 2.6462 -0.0353 -2.1856 6 8 2.7993 1.1707 -2.1046 7 7 3.0941 -0.6962 -3.2597 8 6 3.7058 -0.0367 -4.2385 9 6 3.9534 1.3527 -4.2851 10 6 4.5939 1.6293 -5.4402 11 7 4.7685 0.4701 -6.1386 12 6 5.4215 0.3447 -7.4440 13 6 6.9113 0.2238 -7.2508 14 1 7.3296 0.2385 -6.2552 15 6 7.7400 0.0945 -8.3450 16 7 7.2306 0.0772 -9.5574 17 14 9.5866 -0.0546 -8.1057 18 1 9.9031 -0.0076 -6.6555 19 1 10.0568 -1.3439 -8.6729 20 1 10.2678 1.0687 -8.7981 21 7 4.2096 -0.5792 -5.3962 22 1 4.1853 -1.5148 -5.6510 23 6 1.8290 -2.1603 -1.2688 24 6 2.3302 -2.7841 0.0388 25 8 1.7163 -2.1170 1.1441 26 6 2.0410 -0.7282 1.2433 27 6 1.3818 -0.1371 2.4910 28 6 3.5590 -0.5640 1.3408 29 1 -0.3633 -1.0276 0.0097 30 1 -0.3633 0.5221 0.8852 31 1 -0.3634 0.5055 -0.8947 32 1 3.6767 2.0708 -3.5272 33 1 4.9169 2.6091 -5.7598 34 1 5.2037 1.2272 -8.0455 35 1 5.0480 -0.5435 -7.9534 36 1 6.2718 0.1558 -9.6817 37 1 0.7696 -2.3815 -1.3987 38 1 2.3940 -2.5640 -2.1090 39 1 2.0686 -3.8420 0.0611 40 1 3.4128 -2.6745 0.1029 41 1 1.7458 -0.6590 3.3760 42 1 1.6301 0.9216 2.5661 43 1 0.3003 -0.2528 2.4201 44 1 4.0277 -0.9837 0.4506 45 1 3.8058 0.4950 1.4159 46 1 3.9249 -1.0863 2.2247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408349077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:30 Heat of formation + Delta-G solvation = 34.137707 kcal Electronic energy + Delta-G solvation = -27918.969576 eV Core-core repulsion = 24039.940967 eV Total energy + Delta-G solvation = -3879.028609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.93120 -40.42665 -38.27079 -34.92297 -34.31980 -34.15754 -33.04998 -31.14515 -30.64655 -29.91802 -28.55510 -27.39871 -26.25994 -23.94957 -23.24317 -23.08822 -21.69419 -21.32030 -19.75484 -18.65207 -17.79028 -16.94701 -16.51627 -16.44244 -15.74785 -15.53828 -15.03047 -14.97193 -14.68940 -14.31948 -14.17600 -13.97651 -13.44249 -13.34909 -13.23092 -12.89341 -12.85093 -12.64142 -12.34807 -12.23505 -12.16244 -12.00684 -11.86809 -11.59298 -11.45993 -11.22294 -11.01888 -10.96870 -10.40671 -10.34096 -10.23603 -9.89789 -9.74519 -9.26731 -9.06107 -8.87988 -8.39295 -8.17795 -7.04071 -6.76424 -4.70714 1.68505 1.95547 3.06185 3.21415 3.21534 3.24000 3.37764 3.68959 4.14524 4.28945 4.49921 4.62220 4.78764 4.84886 4.87260 5.06997 5.16090 5.21506 5.26244 5.40972 5.48010 5.49496 5.54215 5.56697 5.68505 5.70493 5.75736 5.80159 5.87345 5.92712 5.94792 6.06980 6.14525 6.18375 6.21755 6.27457 6.33026 6.63062 7.02417 7.18419 7.19768 7.26115 7.51196 7.66087 7.95738 8.16457 8.26282 8.37703 9.00023 9.50882 10.47204 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024247 B = 0.002584 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.514562 B =10832.411445 C =11114.974562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.133 3.867 3 H 0.103 0.897 4 N -0.607 5.607 5 C 0.692 3.308 6 O -0.629 6.629 7 N -0.709 5.709 8 C 0.488 3.512 9 C -0.331 4.331 10 C 0.162 3.838 11 N -0.345 5.345 12 C 0.246 3.754 13 C -0.635 4.635 14 H 0.065 0.935 15 C 0.031 3.969 16 N -0.895 5.895 17 Si 1.080 2.920 18 H -0.286 1.286 19 H -0.283 1.283 20 H -0.281 1.281 21 N -0.471 5.471 22 H 0.444 0.556 23 C 0.091 3.909 24 C 0.043 3.957 25 O -0.374 6.374 26 C 0.104 3.896 27 C -0.138 4.138 28 C -0.174 4.174 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.184 0.816 33 H 0.186 0.814 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.269 0.731 37 H 0.059 0.941 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.682 -1.844 15.657 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.028 3.972 3 H 0.121 0.879 4 N -0.343 5.343 5 C 0.393 3.607 6 O -0.511 6.511 7 N -0.474 5.474 8 C 0.234 3.766 9 C -0.364 4.364 10 C 0.018 3.982 11 N -0.131 5.131 12 C 0.129 3.871 13 C -0.673 4.673 14 H 0.084 0.916 15 C -0.176 4.176 16 N -0.529 5.529 17 Si 0.907 3.093 18 H -0.212 1.212 19 H -0.209 1.209 20 H -0.207 1.207 21 N -0.194 5.194 22 H 0.291 0.709 23 C -0.033 4.033 24 C -0.034 4.034 25 O -0.293 6.293 26 C 0.064 3.936 27 C -0.195 4.195 28 C -0.231 4.231 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.201 0.799 33 H 0.203 0.797 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.307 -2.435 14.700 17.059 hybrid contribution -1.140 0.314 0.384 1.243 sum -9.446 -2.120 15.083 17.923 Atomic orbital electron populations 1.22106 0.95183 1.02384 1.01863 1.21467 0.94179 0.97761 0.83841 0.87944 1.46839 1.61253 1.07083 1.19102 1.16485 0.78126 0.83665 0.82440 1.90719 1.63243 1.15498 1.81649 1.68005 1.35640 1.37736 1.05974 1.18710 0.85179 0.88901 0.83762 1.22401 1.15354 0.96562 1.02068 1.22789 0.93493 0.90364 0.91560 1.47626 1.49497 0.98511 1.17417 1.20047 0.93469 0.99346 0.74258 1.22340 0.90078 1.58081 0.96767 0.91638 1.25974 1.07297 0.92563 0.91743 1.70824 1.15186 1.44399 1.22492 0.83358 0.73004 0.77501 0.75483 1.21162 1.20857 1.20716 1.44391 1.53997 1.05415 1.15600 0.70924 1.22115 1.01214 0.81169 0.98811 1.23033 0.97684 0.96563 0.86148 1.87929 1.71590 1.21519 1.48297 1.21770 0.94478 0.82314 0.95019 1.21816 1.01436 1.00532 0.95733 1.22338 0.95599 1.02783 1.02390 0.92072 0.91545 0.92542 0.79908 0.79676 0.92549 0.94155 0.92017 0.92245 0.87507 0.88346 0.92549 0.91760 0.90940 0.91266 0.91798 0.91472 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 8.63 37.16 0.32 -1.55 16 2 C 0.13 1.82 2.21 -67.64 -0.15 1.67 16 3 H 0.10 1.58 7.07 -51.93 -0.37 1.21 16 4 N -0.61 -9.65 2.24 -170.91 -0.38 -10.03 16 5 C 0.69 13.51 8.23 -87.76 -0.72 12.79 16 6 O -0.63 -13.55 12.73 5.06 0.06 -13.48 16 7 N -0.71 -13.73 9.10 -15.79 -0.14 -13.88 16 8 C 0.49 9.39 8.07 -155.29 -1.25 8.14 16 9 C -0.33 -6.19 9.52 -39.62 -0.38 -6.56 16 10 C 0.16 2.76 11.45 -16.66 -0.19 2.57 16 11 N -0.34 -6.41 3.63 -62.24 -0.23 -6.63 16 12 C 0.25 5.07 5.51 -5.19 -0.03 5.04 16 13 C -0.63 -15.24 9.39 -34.44 -0.32 -15.56 16 14 H 0.07 1.65 7.81 -52.48 -0.41 1.24 16 15 C 0.03 0.77 5.46 -17.82 -0.10 0.67 16 16 N -0.90 -23.43 13.65 55.43 0.76 -22.67 16 17 Si 1.08 22.49 29.90 -169.99 -5.08 17.40 16 18 H -0.29 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 N -0.47 -8.37 7.38 31.33 0.23 -8.13 16 22 H 0.44 6.93 8.96 -182.55 -1.64 5.30 16 23 C 0.09 1.22 6.24 -3.53 -0.02 1.19 16 24 C 0.04 0.50 6.60 37.31 0.25 0.75 16 25 O -0.37 -4.68 9.85 -35.23 -0.35 -5.03 16 26 C 0.10 1.24 0.81 -90.68 -0.07 1.17 16 27 C -0.14 -1.27 8.28 37.16 0.31 -0.96 16 28 C -0.17 -2.12 8.08 37.16 0.30 -1.82 16 29 H 0.06 0.73 7.24 -51.93 -0.38 0.35 16 30 H 0.07 0.64 6.39 -51.93 -0.33 0.31 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.18 3.61 5.77 -52.49 -0.30 3.30 16 33 H 0.19 2.52 8.06 -52.49 -0.42 2.09 16 34 H 0.06 1.15 8.01 -51.93 -0.42 0.73 16 35 H 0.04 0.84 8.01 -51.93 -0.42 0.43 16 36 H 0.27 6.82 7.22 -40.82 -0.29 6.53 16 37 H 0.06 0.75 7.69 -51.93 -0.40 0.35 16 38 H 0.11 1.51 6.93 -51.93 -0.36 1.16 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.69 6.25 -51.93 -0.32 0.37 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.60 6.35 -51.93 -0.33 0.27 16 44 H 0.06 0.91 6.12 -51.93 -0.32 0.59 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -29.92 365.02 -9.73 -39.65 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.04 Total: 9.77 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -2.06 Total: 7.54 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.24 Total: -61.35 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.28 Total: -18.52 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.08 Total: 17.40 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.92 -9.73 -39.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408349077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.784 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds