Wall clock time and date at job start Tue Mar 31 2020 14:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.70786 * 2 1 4 4 N 1.47149 * 109.68017 * 239.46855 * 2 1 3 5 5 C 1.34777 * 120.98760 * 110.83606 * 4 2 1 6 6 O 1.21843 * 119.99618 * 359.71071 * 5 4 2 7 7 N 1.33831 * 120.00272 * 179.71855 * 5 4 2 8 8 C 1.32933 * 120.00227 * 179.97438 * 7 5 4 9 9 C 1.41209 * 126.37615 * 359.97245 * 8 7 5 10 10 C 1.34953 * 108.24488 * 180.02562 * 9 8 7 11 11 N 1.36451 * 108.94958 * 359.97438 * 10 9 8 12 12 C 1.46502 * 125.85801 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46622 * 85.02614 * 12 11 10 14 14 H 1.08005 * 120.00138 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99722 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00073 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46845 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47399 * 119.99815 * 17 15 13 20 20 H 1.48498 * 109.47295 * 240.00422 * 17 15 13 21 21 N 1.37422 * 126.38375 * 180.28966 * 8 7 5 22 22 H 0.97002 * 126.35952 * 359.97438 * 21 8 7 23 23 C 1.47152 * 118.03566 * 290.55475 * 4 2 1 24 24 C 1.53303 * 108.38461 * 309.72045 * 23 4 2 25 25 O 1.42957 * 109.22249 * 52.29938 * 24 23 4 26 26 C 1.42970 * 114.16645 * 297.41739 * 25 24 23 27 27 C 1.52998 * 109.51388 * 182.50269 * 26 25 24 28 28 C 1.52999 * 109.51212 * 302.60875 * 26 25 24 29 29 H 1.09000 * 109.47130 * 180.54096 * 1 2 3 30 30 H 1.09005 * 109.46604 * 300.53428 * 1 2 3 31 31 H 1.08994 * 109.47343 * 60.53281 * 1 2 3 32 32 H 1.08002 * 125.88144 * 359.95974 * 9 8 7 33 33 H 1.08000 * 125.52830 * 180.02562 * 10 9 8 34 34 H 1.08996 * 109.47065 * 325.03296 * 12 11 10 35 35 H 1.08994 * 109.47523 * 205.02772 * 12 11 10 36 36 H 0.97000 * 119.99651 * 0.02562 * 16 15 13 37 37 H 1.09002 * 109.68126 * 69.43764 * 23 4 2 38 38 H 1.08995 * 109.68911 * 189.96013 * 23 4 2 39 39 H 1.09001 * 109.51110 * 172.21819 * 24 23 4 40 40 H 1.08996 * 109.50817 * 292.37434 * 24 23 4 41 41 H 1.09006 * 109.46419 * 60.00411 * 27 26 25 42 42 H 1.08998 * 109.46894 * 179.97438 * 27 26 25 43 43 H 1.08997 * 109.47689 * 300.00664 * 27 26 25 44 44 H 1.09002 * 109.46680 * 60.00136 * 28 26 25 45 45 H 1.08999 * 109.46868 * 179.97438 * 28 26 25 46 46 H 1.08992 * 109.47015 * 300.00104 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 7 2.0255 -0.7039 -1.1934 5 6 2.6462 -0.0353 -2.1856 6 8 2.7993 1.1707 -2.1046 7 7 3.0941 -0.6962 -3.2597 8 6 3.7058 -0.0367 -4.2385 9 6 3.9534 1.3527 -4.2851 10 6 4.5939 1.6293 -5.4402 11 7 4.7685 0.4701 -6.1386 12 6 5.4215 0.3447 -7.4440 13 6 6.9113 0.2238 -7.2508 14 1 7.3296 0.2385 -6.2552 15 6 7.7400 0.0945 -8.3450 16 7 7.2306 0.0772 -9.5574 17 14 9.5866 -0.0546 -8.1057 18 1 9.9031 -0.0076 -6.6555 19 1 10.0568 -1.3439 -8.6729 20 1 10.2678 1.0687 -8.7981 21 7 4.2096 -0.5792 -5.3962 22 1 4.1853 -1.5148 -5.6510 23 6 1.8290 -2.1603 -1.2688 24 6 2.3302 -2.7841 0.0388 25 8 1.7163 -2.1170 1.1441 26 6 2.0410 -0.7282 1.2433 27 6 1.3818 -0.1371 2.4910 28 6 3.5590 -0.5640 1.3408 29 1 -0.3633 -1.0276 0.0097 30 1 -0.3633 0.5221 0.8852 31 1 -0.3634 0.5055 -0.8947 32 1 3.6767 2.0708 -3.5272 33 1 4.9169 2.6091 -5.7598 34 1 5.2037 1.2272 -8.0455 35 1 5.0480 -0.5435 -7.9534 36 1 6.2718 0.1558 -9.6817 37 1 0.7696 -2.3815 -1.3987 38 1 2.3940 -2.5640 -2.1090 39 1 2.0686 -3.8420 0.0611 40 1 3.4128 -2.6745 0.1029 41 1 1.7458 -0.6590 3.3760 42 1 1.6301 0.9216 2.5661 43 1 0.3003 -0.2528 2.4201 44 1 4.0277 -0.9837 0.4506 45 1 3.8058 0.4950 1.4159 46 1 3.9249 -1.0863 2.2247 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408349077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:29 Heat of formation + Delta-G solvation = 16.342248 kcal Electronic energy + Delta-G solvation = -27919.741245 eV Core-core repulsion = 24039.940967 eV Total energy + Delta-G solvation = -3879.800278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.38167 -41.56664 -39.62300 -36.39891 -35.74202 -35.22576 -34.61968 -32.59235 -32.18465 -30.98493 -29.68941 -28.34731 -27.84624 -25.37081 -24.59645 -24.24416 -23.05951 -22.74339 -21.05858 -19.82458 -19.42813 -18.42919 -17.85020 -17.74451 -16.89220 -16.80866 -16.41930 -16.13480 -15.98949 -15.73028 -15.54043 -15.43810 -14.79218 -14.58659 -14.46920 -14.34662 -14.18018 -13.83054 -13.73008 -13.30207 -13.26700 -13.10098 -12.97879 -12.75072 -12.62616 -12.59908 -12.24737 -12.00989 -11.94366 -11.92417 -11.35581 -11.15585 -10.95086 -10.94086 -10.74151 -10.58671 -9.91495 -9.42669 -8.89242 -8.34000 -6.64778 0.22048 0.48970 1.53537 1.57261 1.59711 1.76014 2.00398 2.44084 2.75049 2.83548 2.98311 3.05666 3.59174 3.81700 3.82024 3.93650 4.05275 4.12824 4.22178 4.23305 4.32985 4.38565 4.45807 4.54598 4.57559 4.63144 4.72205 4.76605 4.78348 4.81048 4.88575 4.94204 4.99353 5.02043 5.16724 5.18426 5.23171 5.38064 5.44900 5.73718 5.81837 5.93071 6.04781 6.22122 6.28957 6.37307 6.73914 6.92493 7.11254 8.02511 8.55222 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.024247 B = 0.002584 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.514562 B =10832.411445 C =11114.974562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.126 3.874 3 H 0.082 0.918 4 N -0.605 5.605 5 C 0.678 3.322 6 O -0.658 6.658 7 N -0.714 5.714 8 C 0.474 3.526 9 C -0.343 4.343 10 C 0.176 3.824 11 N -0.351 5.351 12 C 0.256 3.744 13 C -0.638 4.638 14 H 0.051 0.949 15 C -0.008 4.008 16 N -0.920 5.920 17 Si 1.117 2.883 18 H -0.280 1.280 19 H -0.279 1.279 20 H -0.274 1.274 21 N -0.466 5.466 22 H 0.451 0.549 23 C 0.089 3.911 24 C 0.048 3.952 25 O -0.376 6.376 26 C 0.106 3.894 27 C -0.135 4.135 28 C -0.170 4.170 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.039 0.961 32 H 0.173 0.827 33 H 0.221 0.779 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.266 0.734 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.128 0.872 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.037 0.963 45 H 0.064 0.936 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.982 -2.219 16.977 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 H 0.100 0.900 4 N -0.341 5.341 5 C 0.378 3.622 6 O -0.543 6.543 7 N -0.478 5.478 8 C 0.220 3.780 9 C -0.376 4.376 10 C 0.033 3.967 11 N -0.136 5.136 12 C 0.138 3.862 13 C -0.676 4.676 14 H 0.069 0.931 15 C -0.210 4.210 16 N -0.556 5.556 17 Si 0.940 3.060 18 H -0.205 1.205 19 H -0.205 1.205 20 H -0.200 1.200 21 N -0.190 5.190 22 H 0.300 0.700 23 C -0.034 4.034 24 C -0.029 4.029 25 O -0.295 6.295 26 C 0.066 3.934 27 C -0.192 4.192 28 C -0.227 4.227 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.190 0.810 33 H 0.238 0.762 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.146 0.854 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.640 -2.838 16.051 18.448 hybrid contribution -1.093 0.425 0.019 1.173 sum -9.734 -2.414 16.070 18.942 Atomic orbital electron populations 1.22049 0.93551 1.02712 1.02336 1.21676 0.95418 0.96863 0.83892 0.90030 1.46981 1.60140 1.08184 1.18755 1.16816 0.78567 0.83621 0.83148 1.90688 1.64558 1.16662 1.82360 1.68064 1.35825 1.37799 1.06124 1.18925 0.85497 0.89503 0.84099 1.22302 1.16379 0.96287 1.02633 1.23298 0.91880 0.91124 0.90443 1.47510 1.49727 0.99144 1.17248 1.19792 0.91826 0.99556 0.75046 1.22521 0.91921 1.57298 0.95884 0.93094 1.27022 1.10414 0.92066 0.91497 1.70904 1.15141 1.46321 1.23219 0.82861 0.69654 0.77755 0.75743 1.20542 1.20509 1.19968 1.44353 1.53807 1.05704 1.15159 0.70013 1.22245 1.01744 0.79731 0.99701 1.23075 0.97138 0.97842 0.84888 1.87937 1.71625 1.21624 1.48293 1.21849 0.94313 0.82083 0.95185 1.21840 1.01753 1.01121 0.94462 1.22308 0.95944 1.02663 1.01815 0.91735 0.88905 0.94207 0.80983 0.76242 0.91659 0.94292 0.92419 0.91211 0.88560 0.85411 0.93383 0.90682 0.89866 0.90350 0.94348 0.91653 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.63 71.98 0.62 -2.73 16 2 C 0.13 3.41 2.21 44.83 0.10 3.51 16 3 H 0.08 2.56 7.07 -2.39 -0.02 2.54 16 4 N -0.61 -19.38 2.24 -812.78 -1.82 -21.20 16 5 C 0.68 27.09 8.23 179.35 1.48 28.57 16 6 O -0.66 -29.26 12.73 -4.81 -0.06 -29.32 16 7 N -0.71 -28.13 9.10 -322.55 -2.94 -31.07 16 8 C 0.47 18.40 8.07 133.95 1.08 19.48 16 9 C -0.34 -12.89 9.52 22.24 0.21 -12.68 16 10 C 0.18 5.82 11.45 83.22 0.95 6.77 16 11 N -0.35 -12.75 3.63 -350.84 -1.28 -14.02 16 12 C 0.26 10.33 5.51 85.63 0.47 10.80 16 13 C -0.64 -30.17 9.39 25.60 0.24 -29.93 16 14 H 0.05 2.53 7.81 -2.91 -0.02 2.51 16 15 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 16 N -0.92 -47.70 13.65 21.45 0.29 -47.41 16 17 Si 1.12 44.48 29.90 68.60 2.05 46.53 16 18 H -0.28 -10.76 7.11 99.48 0.71 -10.06 16 19 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 21 N -0.47 -16.47 7.38 -54.78 -0.40 -16.88 16 22 H 0.45 14.06 8.96 -213.28 -1.91 12.14 16 23 C 0.09 2.33 6.24 86.36 0.54 2.87 16 24 C 0.05 1.04 6.60 72.08 0.48 1.52 16 25 O -0.38 -8.62 9.85 -148.98 -1.47 -10.09 16 26 C 0.11 2.37 0.81 -10.84 -0.01 2.36 16 27 C -0.13 -2.14 8.28 71.98 0.60 -1.54 16 28 C -0.17 -4.03 8.08 71.98 0.58 -3.45 16 29 H 0.06 1.41 7.24 -2.39 -0.02 1.40 16 30 H 0.09 1.58 6.39 -2.38 -0.02 1.57 16 31 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.17 6.95 5.77 -2.91 -0.02 6.93 16 33 H 0.22 5.49 8.06 -2.91 -0.02 5.47 16 34 H 0.07 2.57 8.01 -2.39 -0.02 2.55 16 35 H 0.04 1.61 8.01 -2.39 -0.02 1.59 16 36 H 0.27 13.40 7.22 -92.71 -0.67 12.73 16 37 H 0.07 1.68 7.69 -2.39 -0.02 1.67 16 38 H 0.10 2.73 6.93 -2.39 -0.02 2.71 16 39 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.05 1.14 6.25 -2.39 -0.01 1.13 16 41 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.12 6.35 -2.39 -0.02 1.10 16 44 H 0.04 1.10 6.12 -2.39 -0.01 1.08 16 45 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -63.97 365.02 1.37 -62.60 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: -0.81 Total: 35.25 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: 7.80 Total: 25.61 kcal Atomic # 7 Polarization: -124.43 SS G_CDS: -6.14 Total: -130.57 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -1.53 Total: -39.41 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.05 Total: 46.53 kcal Total: -63.97 1.37 -62.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408349077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.938 kcal (2) G-P(sol) polarization free energy of solvation -63.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds