Wall clock time and date at job start Tue Mar 31 2020 13:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47570 * 2 1 4 4 H 1.09003 * 109.46973 * 305.00695 * 3 2 1 5 5 N 1.46902 * 109.46846 * 64.99870 * 3 2 1 6 6 C 1.52998 * 109.47494 * 184.99806 * 3 2 1 7 7 N 1.46496 * 109.46991 * 185.00108 * 6 3 2 8 8 C 1.34776 * 119.99988 * 180.02562 * 7 6 3 9 9 O 1.21589 * 120.00100 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00018 * 179.97438 * 8 7 6 11 11 C 1.39594 * 119.99902 * 179.97438 * 10 8 7 12 12 N 1.32268 * 119.72347 * 0.29564 * 11 10 8 13 13 C 1.31970 * 121.68397 * 180.28583 * 12 11 10 14 14 C 1.38074 * 120.95656 * 359.70589 * 13 12 11 15 15 C 1.38794 * 119.35179 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44773 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47141 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47494 * 119.99680 * 24 22 20 27 27 H 1.48505 * 109.47047 * 239.99860 * 24 22 20 28 28 H 1.08999 * 109.47611 * 300.00024 * 1 2 3 29 29 H 1.08998 * 109.46958 * 59.99790 * 1 2 3 30 30 H 1.08999 * 109.47669 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47438 * 240.00311 * 2 1 3 32 32 H 1.09003 * 109.47278 * 120.00574 * 2 1 3 33 33 H 1.00901 * 110.99977 * 296.04993 * 5 3 2 34 34 H 1.00901 * 111.00236 * 59.99927 * 5 3 2 35 35 H 1.08999 * 109.46870 * 65.00165 * 6 3 2 36 36 H 1.08995 * 109.46965 * 305.00402 * 6 3 2 37 37 H 0.97000 * 120.00201 * 0.02562 * 7 6 3 38 38 H 0.97000 * 120.00172 * 0.02562 * 10 8 7 39 39 H 1.08000 * 119.52522 * 179.72561 * 13 12 11 40 40 H 1.07998 * 120.32407 * 180.02562 * 14 13 12 41 41 H 1.07993 * 120.77632 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 43 43 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 44 44 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 45 45 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 46 46 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6514 2.0992 1.2553 6 6 3.5648 1.4443 -0.1257 7 7 4.0630 2.8167 -0.0059 8 6 5.3856 3.0630 -0.0867 9 8 6.1653 2.1461 -0.2595 10 7 5.8439 4.3256 0.0230 11 6 7.2139 4.5806 -0.0602 12 7 8.0567 3.5796 -0.2526 13 6 9.3594 3.7758 -0.3317 14 6 9.8946 5.0438 -0.2217 15 6 9.0472 6.1253 -0.0256 16 6 7.6818 5.8896 0.0526 17 8 6.8137 6.9186 0.2445 18 6 7.3747 8.2280 0.3581 19 6 6.2529 9.2470 0.5680 20 6 6.8445 10.6278 0.6884 21 1 7.9138 10.7647 0.6222 22 6 6.0210 11.7161 0.8840 23 7 4.7189 11.5493 0.9651 24 14 6.7542 13.4277 1.0325 25 1 8.2318 13.3458 0.9073 26 1 6.2129 14.2934 -0.0457 27 1 6.4012 14.0044 2.3547 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.6477 2.1683 1.3315 34 1 2.0422 1.6179 2.0513 35 1 3.8499 1.0377 -1.0960 36 1 3.9953 0.8310 0.6659 37 1 3.4410 3.5482 0.1316 38 1 5.2219 5.0572 0.1605 39 1 10.0163 2.9324 -0.4851 40 1 10.9622 5.1927 -0.2883 41 1 9.4410 7.1270 0.0632 42 1 7.9192 8.4705 -0.5545 43 1 8.0573 8.2585 1.2074 44 1 5.5706 9.2164 -0.2814 45 1 5.7080 9.0048 1.4805 46 1 4.1395 12.3149 1.1024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415502234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:55 Heat of formation + Delta-G solvation = -33.819853 kcal Electronic energy + Delta-G solvation = -26415.837853 eV Core-core repulsion = 22533.862382 eV Total energy + Delta-G solvation = -3881.975470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.81510 -39.51357 -37.87727 -37.52594 -34.69230 -33.98814 -33.44253 -31.54094 -31.11841 -30.51849 -29.18691 -27.91721 -25.37840 -24.20223 -23.13151 -22.59965 -21.13213 -21.06075 -20.37159 -18.56075 -18.02570 -17.42830 -16.65549 -16.15377 -15.92660 -15.76360 -15.63081 -15.20587 -15.04220 -14.68215 -14.56486 -14.26207 -14.11360 -13.86869 -13.80321 -13.35801 -12.84205 -12.75360 -12.38781 -12.30297 -11.97986 -11.93828 -11.86544 -11.42923 -11.28341 -11.01549 -10.99335 -10.65040 -10.61401 -10.28502 -10.00796 -9.74985 -9.37109 -9.17767 -9.11754 -8.97942 -8.94521 -8.50413 -7.54582 -6.15977 -4.20620 1.35049 1.53675 2.56835 3.23137 3.30412 3.33530 3.33861 3.59939 3.96957 4.13732 4.20961 4.35801 4.40952 4.53945 4.63017 4.76870 4.99816 5.02802 5.06521 5.16524 5.20943 5.22308 5.33945 5.44421 5.51726 5.54458 5.57281 5.71297 5.80051 5.91209 5.94720 6.12758 6.25718 6.44737 6.47129 6.59126 6.67856 6.76548 6.97353 7.06127 7.39979 7.56106 7.68598 7.84974 7.93885 8.17072 8.36034 8.75742 8.84941 9.44209 10.95530 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010623 B = 0.002648 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.278566 B =10573.120444 C =13105.701681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.157 4.157 3 C 0.077 3.923 4 H 0.089 0.911 5 N -0.841 5.841 6 C 0.149 3.851 7 N -0.735 5.735 8 C 0.695 3.305 9 O -0.542 6.542 10 N -0.661 5.661 11 C 0.349 3.651 12 N -0.442 5.442 13 C 0.076 3.924 14 C -0.165 4.165 15 C -0.147 4.147 16 C 0.064 3.936 17 O -0.316 6.316 18 C 0.066 3.934 19 C 0.026 3.974 20 C -0.527 4.527 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.344 0.656 34 H 0.343 0.657 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.405 0.595 38 H 0.420 0.580 39 H 0.155 0.845 40 H 0.133 0.867 41 H 0.144 0.856 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 -20.667 -1.700 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.197 4.197 3 C -0.035 4.035 4 H 0.107 0.893 5 N -0.372 5.372 6 C 0.024 3.976 7 N -0.392 5.392 8 C 0.394 3.606 9 O -0.415 6.415 10 N -0.310 5.310 11 C 0.115 3.885 12 N -0.157 5.157 13 C -0.081 4.081 14 C -0.186 4.186 15 C -0.173 4.173 16 C 0.012 3.988 17 O -0.229 6.229 18 C -0.008 4.008 19 C -0.011 4.011 20 C -0.565 4.565 21 H 0.077 0.923 22 C -0.142 4.142 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.240 0.760 38 H 0.258 0.742 39 H 0.173 0.827 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.073 -21.658 -2.178 21.983 hybrid contribution -0.215 1.769 0.544 1.863 sum -3.288 -19.889 -1.634 20.225 Atomic orbital electron populations 1.21776 0.95340 1.02054 1.01944 1.22273 0.96577 0.97773 1.03112 1.21766 0.94584 0.93122 0.94056 0.89326 1.58845 1.16548 1.57949 1.03847 1.21152 0.91794 0.82712 1.01928 1.44927 1.05462 1.10072 1.78741 1.15978 0.82785 0.82964 0.78861 1.91013 1.54756 1.42409 1.53284 1.42496 1.05238 1.09078 1.74236 1.17507 0.84680 0.86417 0.99916 1.67644 1.03587 1.31046 1.13413 1.22407 0.90247 0.96380 0.99038 1.21867 1.00772 0.93084 1.02903 1.21576 0.91585 1.01029 1.03156 1.19546 0.90327 0.88093 1.00853 1.86103 1.34581 1.16000 1.86185 1.23376 0.99835 0.77901 0.99653 1.19128 0.92668 0.90696 0.98606 1.20992 0.93529 0.90953 1.51017 0.92287 1.24985 0.94815 0.99453 0.94918 1.69976 1.02875 1.30936 1.48901 0.86434 0.79331 0.83841 0.77801 1.19629 1.20821 1.20822 0.92786 0.92345 0.92412 0.90984 0.91617 0.84235 0.84441 0.91277 0.91909 0.76004 0.74225 0.82745 0.84904 0.83811 0.92997 0.92988 0.95357 0.95343 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.68 37.15 0.36 -0.36 16 2 C -0.16 -0.85 5.58 -26.73 -0.15 -1.00 16 3 C 0.08 0.51 2.96 -67.71 -0.20 0.31 16 4 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 5 N -0.84 -5.42 8.63 -4.67 -0.04 -5.46 16 6 C 0.15 1.42 5.34 -4.05 -0.02 1.40 16 7 N -0.73 -8.45 5.39 -65.23 -0.35 -8.81 16 8 C 0.69 10.86 8.53 -86.92 -0.74 10.12 16 9 O -0.54 -10.32 14.59 5.29 0.08 -10.24 16 10 N -0.66 -10.38 5.40 -15.67 -0.08 -10.46 16 11 C 0.35 6.10 7.45 -154.43 -1.15 4.95 16 12 N -0.44 -7.80 7.87 -12.22 -0.10 -7.90 16 13 C 0.08 1.09 11.17 -17.55 -0.20 0.89 16 14 C -0.16 -2.15 10.10 -39.44 -0.40 -2.55 16 15 C -0.15 -2.22 9.14 -39.17 -0.36 -2.57 16 16 C 0.06 1.10 6.72 -38.92 -0.26 0.84 16 17 O -0.32 -5.98 9.39 -19.69 -0.18 -6.16 16 18 C 0.07 1.33 4.70 37.16 0.17 1.51 16 19 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 20 C -0.53 -14.18 9.11 -34.44 -0.31 -14.49 16 21 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 24 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H 0.05 0.23 6.87 -51.93 -0.36 -0.13 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.34 1.80 7.55 -39.29 -0.30 1.51 16 34 H 0.34 2.14 9.00 -39.29 -0.35 1.79 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.40 4.13 8.15 -40.82 -0.33 3.79 16 38 H 0.42 5.94 8.06 -40.82 -0.33 5.61 16 39 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.14 2.01 6.44 -52.49 -0.34 1.67 16 42 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 43 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 383.60 15.07 5.78 5.78 Total: -1.00 -33.07 383.60 -9.68 -42.75 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.00 Total: 8.58 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -3.50 Total: 1.11 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.16 Total: -57.59 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.11 Total: -16.40 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.07 -9.68 -42.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415502234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.930 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds