Wall clock time and date at job start Tue Mar 31 2020 13:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47570 * 2 1 4 4 H 1.09003 * 109.46973 * 305.00695 * 3 2 1 5 5 N 1.46902 * 109.46846 * 64.99870 * 3 2 1 6 6 C 1.52998 * 109.47494 * 184.99806 * 3 2 1 7 7 N 1.46496 * 109.46991 * 185.00108 * 6 3 2 8 8 C 1.34776 * 119.99988 * 180.02562 * 7 6 3 9 9 O 1.21589 * 120.00100 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00018 * 179.97438 * 8 7 6 11 11 C 1.39594 * 119.99902 * 179.97438 * 10 8 7 12 12 N 1.32268 * 119.72347 * 0.29564 * 11 10 8 13 13 C 1.31970 * 121.68397 * 180.28583 * 12 11 10 14 14 C 1.38074 * 120.95656 * 359.70589 * 13 12 11 15 15 C 1.38794 * 119.35179 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44773 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47141 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47494 * 119.99680 * 24 22 20 27 27 H 1.48505 * 109.47047 * 239.99860 * 24 22 20 28 28 H 1.08999 * 109.47611 * 300.00024 * 1 2 3 29 29 H 1.08998 * 109.46958 * 59.99790 * 1 2 3 30 30 H 1.08999 * 109.47669 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47438 * 240.00311 * 2 1 3 32 32 H 1.09003 * 109.47278 * 120.00574 * 2 1 3 33 33 H 1.00901 * 110.99977 * 296.04993 * 5 3 2 34 34 H 1.00901 * 111.00236 * 59.99927 * 5 3 2 35 35 H 1.08999 * 109.46870 * 65.00165 * 6 3 2 36 36 H 1.08995 * 109.46965 * 305.00402 * 6 3 2 37 37 H 0.97000 * 120.00201 * 0.02562 * 7 6 3 38 38 H 0.97000 * 120.00172 * 0.02562 * 10 8 7 39 39 H 1.08000 * 119.52522 * 179.72561 * 13 12 11 40 40 H 1.07998 * 120.32407 * 180.02562 * 14 13 12 41 41 H 1.07993 * 120.77632 * 180.02562 * 15 14 13 42 42 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 43 43 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 44 44 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 45 45 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 46 46 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6514 2.0992 1.2553 6 6 3.5648 1.4443 -0.1257 7 7 4.0630 2.8167 -0.0059 8 6 5.3856 3.0630 -0.0867 9 8 6.1653 2.1461 -0.2595 10 7 5.8439 4.3256 0.0230 11 6 7.2139 4.5806 -0.0602 12 7 8.0567 3.5796 -0.2526 13 6 9.3594 3.7758 -0.3317 14 6 9.8946 5.0438 -0.2217 15 6 9.0472 6.1253 -0.0256 16 6 7.6818 5.8896 0.0526 17 8 6.8137 6.9186 0.2445 18 6 7.3747 8.2280 0.3581 19 6 6.2529 9.2470 0.5680 20 6 6.8445 10.6278 0.6884 21 1 7.9138 10.7647 0.6222 22 6 6.0210 11.7161 0.8840 23 7 4.7189 11.5493 0.9651 24 14 6.7542 13.4277 1.0325 25 1 8.2318 13.3458 0.9073 26 1 6.2129 14.2934 -0.0457 27 1 6.4012 14.0044 2.3547 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.6477 2.1683 1.3315 34 1 2.0422 1.6179 2.0513 35 1 3.8499 1.0377 -1.0960 36 1 3.9953 0.8310 0.6659 37 1 3.4410 3.5482 0.1316 38 1 5.2219 5.0572 0.1605 39 1 10.0163 2.9324 -0.4851 40 1 10.9622 5.1927 -0.2883 41 1 9.4410 7.1270 0.0632 42 1 7.9192 8.4705 -0.5545 43 1 8.0573 8.2585 1.2074 44 1 5.5706 9.2164 -0.2814 45 1 5.7080 9.0048 1.4805 46 1 4.1395 12.3149 1.1024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415502234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:54 Heat of formation + Delta-G solvation = -57.607387 kcal Electronic energy + Delta-G solvation = -26416.869358 eV Core-core repulsion = 22533.862382 eV Total energy + Delta-G solvation = -3883.006975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.04027 -40.69758 -39.13820 -38.33397 -35.90826 -35.42601 -34.97376 -32.85175 -32.22532 -31.59618 -30.44892 -28.73780 -27.14705 -25.25285 -24.31276 -23.68199 -22.68144 -21.87617 -21.46824 -19.78527 -19.25833 -18.79557 -18.01414 -17.41009 -17.20781 -17.07911 -16.58545 -16.47774 -16.32854 -15.74865 -15.62025 -15.20832 -15.06766 -14.97858 -14.88468 -14.34295 -14.27686 -14.11953 -13.63974 -13.47697 -13.26399 -12.92139 -12.77232 -12.75911 -12.43411 -12.41273 -11.95811 -11.84393 -11.78957 -11.68891 -11.62202 -11.53886 -11.36998 -10.60416 -10.40224 -10.21306 -10.02202 -9.63208 -8.78639 -8.24604 -6.36971 0.17800 0.33143 1.43111 1.43377 1.47428 1.56392 2.13346 2.14294 2.45712 2.94504 2.99347 3.10659 3.57758 3.64164 3.78863 3.89251 3.98880 4.04676 4.16212 4.16984 4.31755 4.36179 4.39406 4.50442 4.56846 4.72953 4.76756 4.77107 4.91419 4.99114 5.11487 5.16717 5.23743 5.31091 5.33894 5.34948 5.49109 5.52159 5.55027 5.73661 5.87337 6.09629 6.22379 6.37882 6.58660 6.77745 6.78451 7.20431 7.32998 7.57612 8.88314 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010623 B = 0.002648 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.278566 B =10573.120444 C =13105.701681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.152 4.152 3 C 0.089 3.911 4 H 0.090 0.910 5 N -0.848 5.848 6 C 0.147 3.853 7 N -0.719 5.719 8 C 0.690 3.310 9 O -0.579 6.579 10 N -0.661 5.661 11 C 0.329 3.671 12 N -0.473 5.473 13 C 0.074 3.926 14 C -0.148 4.148 15 C -0.147 4.147 16 C 0.039 3.961 17 O -0.329 6.329 18 C 0.083 3.917 19 C 0.030 3.970 20 C -0.543 4.543 21 H 0.071 0.929 22 C 0.003 3.997 23 N -0.929 5.929 24 Si 0.971 3.029 25 H -0.258 1.258 26 H -0.279 1.279 27 H -0.279 1.279 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.352 0.648 34 H 0.344 0.656 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.412 0.588 38 H 0.424 0.576 39 H 0.185 0.815 40 H 0.176 0.824 41 H 0.157 0.843 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.001 0.999 45 H 0.001 0.999 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.786 -20.538 -1.766 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.192 4.192 3 C -0.023 4.023 4 H 0.108 0.892 5 N -0.380 5.380 6 C 0.023 3.977 7 N -0.376 5.376 8 C 0.390 3.610 9 O -0.455 6.455 10 N -0.311 5.311 11 C 0.096 3.904 12 N -0.188 5.188 13 C -0.083 4.083 14 C -0.169 4.169 15 C -0.173 4.173 16 C -0.012 4.012 17 O -0.243 6.243 18 C 0.009 3.991 19 C -0.008 4.008 20 C -0.581 4.581 21 H 0.089 0.911 22 C -0.196 4.196 23 N -0.569 5.569 24 Si 0.795 3.205 25 H -0.181 1.181 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.168 0.832 34 H 0.157 0.843 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.249 0.751 38 H 0.262 0.738 39 H 0.202 0.798 40 H 0.193 0.807 41 H 0.175 0.825 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.020 0.980 45 H 0.019 0.981 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.508 -21.536 -2.241 21.705 hybrid contribution -0.667 1.612 0.551 1.830 sum -2.175 -19.924 -1.690 20.113 Atomic orbital electron populations 1.21761 0.94517 1.02406 1.02224 1.22216 0.97167 0.96647 1.03171 1.21625 0.92299 0.94149 0.94271 0.89162 1.58823 1.17324 1.58059 1.03763 1.21303 0.93728 0.81342 1.01342 1.44910 1.04156 1.11232 1.77301 1.16185 0.83654 0.82505 0.78664 1.90969 1.55964 1.43332 1.55229 1.42523 1.05162 1.09261 1.74164 1.17707 0.85285 0.86644 1.00756 1.67688 1.05132 1.31559 1.14462 1.23061 0.89568 0.98174 0.97473 1.22263 1.02560 0.91663 1.00398 1.21885 0.90818 1.02423 1.02187 1.19686 0.91194 0.87375 1.02990 1.86032 1.35317 1.15825 1.87102 1.22951 0.97723 0.77738 1.00669 1.18950 0.93598 0.92130 0.96095 1.21434 0.94245 0.91876 1.50496 0.91066 1.25973 0.95163 1.03990 0.94476 1.70110 1.04437 1.32308 1.50019 0.85306 0.79133 0.78319 0.77729 1.18120 1.20468 1.20477 0.92228 0.92354 0.92035 0.90996 0.91541 0.83236 0.84258 0.91800 0.92666 0.75141 0.73837 0.79764 0.80680 0.82500 0.91793 0.91800 0.98041 0.98051 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.68 71.98 0.70 -0.55 16 2 C -0.15 -1.52 5.58 30.59 0.17 -1.35 16 3 C 0.09 1.13 2.96 44.91 0.13 1.26 16 4 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 5 N -0.85 -10.42 8.63 -168.67 -1.45 -11.87 16 6 C 0.15 2.84 5.34 86.38 0.46 3.30 16 7 N -0.72 -16.93 5.39 -478.56 -2.58 -19.51 16 8 C 0.69 22.23 8.53 179.06 1.53 23.76 16 9 O -0.58 -22.62 14.59 -4.00 -0.06 -22.68 16 10 N -0.66 -21.46 5.40 -321.75 -1.74 -23.20 16 11 C 0.33 11.61 7.45 132.98 0.99 12.60 16 12 N -0.47 -16.51 7.87 -192.57 -1.52 -18.03 16 13 C 0.07 1.95 11.17 84.63 0.95 2.90 16 14 C -0.15 -3.37 10.10 22.36 0.23 -3.15 16 15 C -0.15 -4.12 9.14 22.53 0.21 -3.91 16 16 C 0.04 1.32 6.72 22.70 0.15 1.47 16 17 O -0.33 -12.63 9.39 -93.36 -0.88 -13.50 16 18 C 0.08 3.33 4.70 71.98 0.34 3.67 16 19 C 0.03 1.51 5.34 29.85 0.16 1.67 16 20 C -0.54 -29.20 9.11 25.60 0.23 -28.97 16 21 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 22 C 0.00 0.14 5.46 84.65 0.46 0.61 16 23 N -0.93 -54.72 13.29 21.45 0.28 -54.44 16 24 Si 0.97 42.25 29.54 68.60 2.03 44.28 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 28 H 0.06 0.43 6.87 -2.39 -0.02 0.41 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.35 3.35 7.55 -89.69 -0.68 2.67 16 34 H 0.34 4.13 9.00 -89.69 -0.81 3.32 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.41 8.52 8.15 -92.71 -0.76 7.77 16 38 H 0.42 12.58 8.06 -92.71 -0.75 11.84 16 39 H 0.19 3.59 8.06 -2.91 -0.02 3.56 16 40 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.16 3.94 6.44 -2.91 -0.02 3.92 16 42 H 0.06 2.38 7.70 -2.39 -0.02 2.36 16 43 H 0.06 2.38 7.70 -2.39 -0.02 2.36 16 44 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -72.65 383.60 -1.16 -73.81 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -1.95 Total: 31.84 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 6.70 Total: 13.30 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -7.00 Total: -127.05 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -0.93 Total: -36.18 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -72.65 -1.16 -73.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415502234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.204 kcal (2) G-P(sol) polarization free energy of solvation -72.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds