Wall clock time and date at job start Tue Mar 31 2020 13:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46843 * 2 1 4 4 H 1.09006 * 109.47282 * 54.99990 * 3 2 1 5 5 N 1.46897 * 109.47453 * 294.99511 * 3 2 1 6 6 C 1.53006 * 109.46740 * 174.99837 * 3 2 1 7 7 N 1.46509 * 109.46995 * 175.00006 * 6 3 2 8 8 C 1.34769 * 120.00005 * 179.97438 * 7 6 3 9 9 O 1.21589 * 120.00188 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00282 * 179.97438 * 8 7 6 11 11 C 1.39582 * 120.00497 * 180.02562 * 10 8 7 12 12 N 1.32273 * 119.72229 * 359.97438 * 11 10 8 13 13 C 1.31971 * 121.68673 * 180.02562 * 12 11 10 14 14 C 1.38065 * 120.95517 * 359.97438 * 13 12 11 15 15 C 1.38793 * 119.35510 * 359.75214 * 14 13 12 16 16 C 1.38781 * 118.44640 * 0.48729 * 15 14 13 17 17 O 1.35983 * 120.49954 * 179.78043 * 16 15 14 18 18 C 1.42906 * 116.99537 * 359.73074 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47141 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47494 * 119.99680 * 24 22 20 27 27 H 1.48505 * 109.47047 * 239.99860 * 24 22 20 28 28 H 1.08999 * 109.47476 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47154 * 300.00154 * 1 2 3 30 30 H 1.09002 * 109.47006 * 60.00027 * 1 2 3 31 31 H 1.08998 * 109.47154 * 239.99846 * 2 1 3 32 32 H 1.08995 * 109.46729 * 119.99688 * 2 1 3 33 33 H 1.00898 * 111.00626 * 176.04466 * 5 3 2 34 34 H 1.00891 * 111.00301 * 300.00829 * 5 3 2 35 35 H 1.09000 * 109.47126 * 55.00010 * 6 3 2 36 36 H 1.09002 * 109.47092 * 294.99534 * 6 3 2 37 37 H 0.96999 * 119.99506 * 0.02562 * 7 6 3 38 38 H 0.97000 * 119.99815 * 0.02562 * 10 8 7 39 39 H 1.08000 * 119.52502 * 179.97438 * 13 12 11 40 40 H 1.08006 * 120.32603 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.78184 * 180.27511 * 15 14 13 42 42 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 43 43 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 44 44 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 45 45 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 46 46 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 7 1.6514 2.0993 -1.2552 6 6 3.5648 1.4443 0.1258 7 7 4.0631 2.8168 0.0060 8 6 5.3856 3.0631 0.0869 9 8 6.1654 2.1461 0.2589 10 7 5.8441 4.3256 -0.0238 11 6 7.2138 4.5807 0.0595 12 7 8.0571 3.5791 0.2476 13 6 9.3593 3.7760 0.3327 14 6 9.8941 5.0445 0.2271 15 6 9.0474 6.1251 0.0235 16 6 7.6821 5.8892 -0.0568 17 8 6.8142 6.9179 -0.2510 18 6 7.3749 8.2280 -0.3594 19 6 6.2534 9.2464 -0.5742 20 6 6.8445 10.6280 -0.6878 21 1 7.9131 10.7658 -0.6138 22 6 6.0211 11.7161 -0.8853 23 7 4.7197 11.5482 -0.9750 24 14 6.7538 13.4284 -1.0268 25 1 8.2307 13.3475 -0.8934 26 1 6.4068 14.0076 -2.3495 27 1 6.2065 14.2916 0.0506 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9203 3.0718 -1.2529 34 1 2.0422 1.6180 -2.0512 35 1 3.9954 0.8311 -0.6658 36 1 3.8498 1.0377 1.0961 37 1 3.4409 3.5484 -0.1308 38 1 5.2221 5.0571 -0.1613 39 1 10.0161 2.9327 0.4871 40 1 10.9615 5.1939 0.2978 41 1 9.4413 7.1267 -0.0668 42 1 8.0617 8.2605 -1.2051 43 1 7.9145 8.4691 0.5565 44 1 5.7141 9.0051 -1.4901 45 1 5.5663 9.2140 0.2713 46 1 4.1405 12.3136 -1.1142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415502235.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:58 Heat of formation + Delta-G solvation = -32.683801 kcal Electronic energy + Delta-G solvation = -26447.676736 eV Core-core repulsion = 22565.750529 eV Total energy + Delta-G solvation = -3881.926207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.94679 -39.69216 -37.93527 -37.52077 -34.80054 -34.02239 -33.49203 -31.64014 -31.32256 -30.57279 -29.20956 -27.81746 -25.43937 -24.23035 -23.16669 -22.67635 -21.23247 -21.07296 -20.52396 -18.76907 -18.15141 -17.51272 -16.73178 -16.20860 -16.03651 -15.91058 -15.73339 -15.37857 -14.87914 -14.65980 -14.50163 -14.44587 -13.95747 -13.94030 -13.79748 -13.38542 -12.96059 -12.84583 -12.42759 -12.23939 -12.03177 -11.93995 -11.81740 -11.27341 -11.15609 -11.06685 -11.02752 -10.73508 -10.69129 -10.43339 -10.06864 -9.80004 -9.42107 -9.34189 -9.15837 -9.10081 -9.08833 -8.54467 -7.65094 -6.20048 -4.24870 1.25878 1.45448 2.37072 3.16991 3.20391 3.27670 3.30632 3.52073 3.82363 4.04352 4.19120 4.32297 4.36603 4.61463 4.70064 4.79008 4.95470 5.06249 5.07023 5.17030 5.20698 5.24757 5.38967 5.47026 5.52758 5.55562 5.69449 5.84372 5.88418 5.88570 6.04377 6.06996 6.17173 6.22070 6.35163 6.52305 6.53810 6.73279 6.79010 7.03340 7.33346 7.50300 7.59870 7.68079 7.85203 8.12382 8.22515 8.57557 8.80584 9.40271 10.91451 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010661 B = 0.002652 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.810666 B =10553.897083 C =13077.346138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.079 3.921 4 H 0.088 0.912 5 N -0.838 5.838 6 C 0.103 3.897 7 N -0.748 5.748 8 C 0.697 3.303 9 O -0.534 6.534 10 N -0.661 5.661 11 C 0.346 3.654 12 N -0.442 5.442 13 C 0.076 3.924 14 C -0.162 4.162 15 C -0.146 4.146 16 C 0.065 3.935 17 O -0.317 6.317 18 C 0.066 3.934 19 C 0.027 3.973 20 C -0.528 4.528 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.340 0.660 34 H 0.342 0.658 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.394 0.606 38 H 0.420 0.580 39 H 0.156 0.844 40 H 0.134 0.866 41 H 0.145 0.855 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.545 -19.459 1.755 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.033 4.033 4 H 0.107 0.893 5 N -0.368 5.368 6 C -0.023 4.023 7 N -0.407 5.407 8 C 0.396 3.604 9 O -0.405 6.405 10 N -0.310 5.310 11 C 0.112 3.888 12 N -0.157 5.157 13 C -0.081 4.081 14 C -0.184 4.184 15 C -0.173 4.173 16 C 0.013 3.987 17 O -0.229 6.229 18 C -0.008 4.008 19 C -0.011 4.011 20 C -0.566 4.566 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.228 0.772 38 H 0.257 0.743 39 H 0.173 0.827 40 H 0.152 0.848 41 H 0.163 0.837 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.369 -21.279 2.154 21.518 hybrid contribution 1.393 2.935 -0.388 3.272 sum -0.976 -18.344 1.766 18.454 Atomic orbital electron populations 1.21654 0.94749 1.01046 1.02681 1.21462 0.97088 0.94272 1.02284 1.21803 0.90895 0.96811 0.93821 0.89340 1.58944 1.67096 1.06869 1.03862 1.22079 0.95294 0.82066 1.02866 1.45125 1.05806 1.09929 1.79806 1.15927 0.82553 0.83090 0.78833 1.91033 1.54463 1.42402 1.52637 1.42475 1.05398 1.08901 1.74266 1.17478 0.84545 0.86481 1.00310 1.67627 1.03659 1.31049 1.13348 1.22412 0.90195 0.96432 0.99013 1.21888 1.00861 0.93058 1.02558 1.21594 0.91571 1.01102 1.03046 1.19537 0.90355 0.88065 1.00703 1.86096 1.34663 1.16030 1.86147 1.23393 0.99883 0.77781 0.99731 1.19128 0.92647 0.90727 0.98557 1.20985 0.93606 0.90875 1.51109 0.92273 1.24985 0.94813 0.99489 0.94861 1.69971 1.02931 1.31002 1.48784 0.86429 0.79333 0.83786 0.77833 1.19621 1.20788 1.20796 0.93266 0.93019 0.91424 0.91754 0.91360 0.84598 0.84456 0.91493 0.91127 0.77176 0.74274 0.82654 0.84793 0.83720 0.92945 0.92938 0.95375 0.95379 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.80 37.16 0.36 -0.57 16 2 C -0.11 -0.71 5.58 -26.73 -0.15 -0.86 16 3 C 0.08 0.54 2.98 -67.71 -0.20 0.33 16 4 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 5 N -0.84 -5.59 8.63 -4.67 -0.04 -5.63 16 6 C 0.10 0.92 5.34 -4.03 -0.02 0.89 16 7 N -0.75 -7.56 5.35 -65.22 -0.35 -7.91 16 8 C 0.70 10.18 8.53 -86.93 -0.74 9.44 16 9 O -0.53 -9.79 14.59 5.29 0.08 -9.71 16 10 N -0.66 -9.69 5.40 -15.67 -0.08 -9.77 16 11 C 0.35 5.79 7.45 -154.43 -1.15 4.64 16 12 N -0.44 -7.53 7.87 -12.22 -0.10 -7.63 16 13 C 0.08 1.05 11.17 -17.56 -0.20 0.85 16 14 C -0.16 -2.03 10.10 -39.44 -0.40 -2.43 16 15 C -0.15 -2.13 9.14 -39.18 -0.36 -2.49 16 16 C 0.07 1.08 6.72 -38.92 -0.26 0.82 16 17 O -0.32 -5.77 9.39 -19.69 -0.18 -5.95 16 18 C 0.07 1.29 4.70 37.16 0.17 1.47 16 19 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 20 C -0.53 -14.00 9.11 -34.44 -0.31 -14.31 16 21 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 23 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 24 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.50 7.75 -51.93 -0.40 0.09 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.34 2.15 7.53 -39.29 -0.30 1.85 16 34 H 0.34 2.19 9.00 -39.30 -0.35 1.84 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.39 3.07 7.17 -40.82 -0.29 2.78 16 38 H 0.42 5.40 8.06 -40.82 -0.33 5.07 16 39 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 41 H 0.15 1.95 6.44 -52.49 -0.34 1.61 16 42 H 0.05 0.98 7.69 -51.93 -0.40 0.58 16 43 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 383.59 15.07 5.78 5.78 Total: -1.00 -32.72 383.59 -9.68 -42.40 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.00 Total: 7.66 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -3.50 Total: -0.14 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.17 Total: -55.59 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.11 Total: -15.66 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.72 -9.68 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415502235.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.720 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds