Wall clock time and date at job start Tue Mar 31 2020 13:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46843 * 2 1 4 4 H 1.09006 * 109.47282 * 54.99990 * 3 2 1 5 5 N 1.46897 * 109.47453 * 294.99511 * 3 2 1 6 6 C 1.53006 * 109.46740 * 174.99837 * 3 2 1 7 7 N 1.46509 * 109.46995 * 175.00006 * 6 3 2 8 8 C 1.34769 * 120.00005 * 179.97438 * 7 6 3 9 9 O 1.21589 * 120.00188 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00282 * 179.97438 * 8 7 6 11 11 C 1.39582 * 120.00497 * 180.02562 * 10 8 7 12 12 N 1.32273 * 119.72229 * 359.97438 * 11 10 8 13 13 C 1.31971 * 121.68673 * 180.02562 * 12 11 10 14 14 C 1.38065 * 120.95517 * 359.97438 * 13 12 11 15 15 C 1.38793 * 119.35510 * 359.75214 * 14 13 12 16 16 C 1.38781 * 118.44640 * 0.48729 * 15 14 13 17 17 O 1.35983 * 120.49954 * 179.78043 * 16 15 14 18 18 C 1.42906 * 116.99537 * 359.73074 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47141 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47494 * 119.99680 * 24 22 20 27 27 H 1.48505 * 109.47047 * 239.99860 * 24 22 20 28 28 H 1.08999 * 109.47476 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47154 * 300.00154 * 1 2 3 30 30 H 1.09002 * 109.47006 * 60.00027 * 1 2 3 31 31 H 1.08998 * 109.47154 * 239.99846 * 2 1 3 32 32 H 1.08995 * 109.46729 * 119.99688 * 2 1 3 33 33 H 1.00898 * 111.00626 * 176.04466 * 5 3 2 34 34 H 1.00891 * 111.00301 * 300.00829 * 5 3 2 35 35 H 1.09000 * 109.47126 * 55.00010 * 6 3 2 36 36 H 1.09002 * 109.47092 * 294.99534 * 6 3 2 37 37 H 0.96999 * 119.99506 * 0.02562 * 7 6 3 38 38 H 0.97000 * 119.99815 * 0.02562 * 10 8 7 39 39 H 1.08000 * 119.52502 * 179.97438 * 13 12 11 40 40 H 1.08006 * 120.32603 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.78184 * 180.27511 * 15 14 13 42 42 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 43 43 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 44 44 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 45 45 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 46 46 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 7 1.6514 2.0993 -1.2552 6 6 3.5648 1.4443 0.1258 7 7 4.0631 2.8168 0.0060 8 6 5.3856 3.0631 0.0869 9 8 6.1654 2.1461 0.2589 10 7 5.8441 4.3256 -0.0238 11 6 7.2138 4.5807 0.0595 12 7 8.0571 3.5791 0.2476 13 6 9.3593 3.7760 0.3327 14 6 9.8941 5.0445 0.2271 15 6 9.0474 6.1251 0.0235 16 6 7.6821 5.8892 -0.0568 17 8 6.8142 6.9179 -0.2510 18 6 7.3749 8.2280 -0.3594 19 6 6.2534 9.2464 -0.5742 20 6 6.8445 10.6280 -0.6878 21 1 7.9131 10.7658 -0.6138 22 6 6.0211 11.7161 -0.8853 23 7 4.7197 11.5482 -0.9750 24 14 6.7538 13.4284 -1.0268 25 1 8.2307 13.3475 -0.8934 26 1 6.4068 14.0076 -2.3495 27 1 6.2065 14.2916 0.0506 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9203 3.0718 -1.2529 34 1 2.0422 1.6180 -2.0512 35 1 3.9954 0.8311 -0.6658 36 1 3.8498 1.0377 1.0961 37 1 3.4409 3.5484 -0.1308 38 1 5.2221 5.0571 -0.1613 39 1 10.0161 2.9327 0.4871 40 1 10.9615 5.1939 0.2978 41 1 9.4413 7.1267 -0.0668 42 1 8.0617 8.2605 -1.2051 43 1 7.9145 8.4691 0.5565 44 1 5.7141 9.0051 -1.4901 45 1 5.5663 9.2140 0.2713 46 1 4.1405 12.3136 -1.1142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415502235.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:57 Heat of formation + Delta-G solvation = -55.978130 kcal Electronic energy + Delta-G solvation = -26448.686854 eV Core-core repulsion = 22565.750529 eV Total energy + Delta-G solvation = -3882.936325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.10739 -40.81172 -39.18157 -38.34008 -35.97183 -35.44351 -34.92198 -32.88194 -32.27349 -31.86690 -30.44307 -28.60259 -27.16617 -25.29552 -24.33453 -23.70912 -22.72100 -21.95548 -21.51080 -19.90295 -19.35059 -18.84070 -18.03505 -17.42514 -17.27638 -17.14274 -16.66789 -16.51961 -16.48365 -15.71059 -15.53339 -15.41968 -15.16578 -15.00321 -14.50035 -14.35660 -14.27763 -14.14845 -13.71554 -13.59194 -13.29059 -12.84496 -12.78553 -12.77897 -12.44238 -12.41425 -11.90194 -11.84116 -11.71749 -11.69833 -11.64313 -11.57960 -11.38718 -10.61583 -10.45676 -10.26531 -10.18900 -9.70382 -8.83796 -8.25956 -6.38145 0.13747 0.29763 1.35162 1.42201 1.42814 1.55448 2.03745 2.11263 2.44273 2.86837 2.90312 3.09540 3.55570 3.60978 3.72868 3.86405 3.95574 4.05993 4.13300 4.20808 4.30008 4.34092 4.43703 4.47243 4.63566 4.67854 4.75165 4.91223 4.95567 4.97256 5.13228 5.18921 5.25693 5.31477 5.32456 5.35562 5.50163 5.50727 5.54253 5.68885 5.78171 6.08250 6.17098 6.34034 6.48784 6.64788 6.77013 7.12213 7.31943 7.46905 8.86853 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010661 B = 0.002652 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.810666 B =10553.897083 C =13077.346138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C 0.091 3.909 4 H 0.090 0.910 5 N -0.839 5.839 6 C 0.107 3.893 7 N -0.731 5.731 8 C 0.693 3.307 9 O -0.574 6.574 10 N -0.660 5.660 11 C 0.327 3.673 12 N -0.473 5.473 13 C 0.074 3.926 14 C -0.146 4.146 15 C -0.147 4.147 16 C 0.041 3.959 17 O -0.329 6.329 18 C 0.083 3.917 19 C 0.030 3.970 20 C -0.543 4.543 21 H 0.071 0.929 22 C 0.003 3.997 23 N -0.929 5.929 24 Si 0.970 3.030 25 H -0.258 1.258 26 H -0.279 1.279 27 H -0.279 1.279 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.343 0.657 34 H 0.345 0.655 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.406 0.594 38 H 0.425 0.575 39 H 0.185 0.815 40 H 0.176 0.824 41 H 0.158 0.842 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.002 0.998 45 H 0.001 0.999 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 -19.337 1.889 19.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 C -0.022 4.022 4 H 0.108 0.892 5 N -0.369 5.369 6 C -0.019 4.019 7 N -0.389 5.389 8 C 0.393 3.607 9 O -0.449 6.449 10 N -0.310 5.310 11 C 0.094 3.906 12 N -0.188 5.188 13 C -0.083 4.083 14 C -0.167 4.167 15 C -0.174 4.174 16 C -0.011 4.011 17 O -0.242 6.242 18 C 0.009 3.991 19 C -0.007 4.007 20 C -0.581 4.581 21 H 0.089 0.911 22 C -0.195 4.195 23 N -0.568 5.568 24 Si 0.794 3.206 25 H -0.181 1.181 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.243 0.757 38 H 0.263 0.737 39 H 0.202 0.798 40 H 0.193 0.807 41 H 0.175 0.825 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.703 -21.157 2.282 21.291 hybrid contribution 0.901 2.778 -0.417 2.950 sum 0.197 -18.378 1.865 18.474 Atomic orbital electron populations 1.21617 0.94661 1.01375 1.02157 1.21464 0.97031 0.93765 1.02711 1.21727 0.89093 0.97388 0.93953 0.89170 1.58961 1.66991 1.07066 1.03888 1.22168 0.96645 0.81029 1.02104 1.45026 1.04515 1.11015 1.78338 1.16124 0.83474 0.82583 0.78552 1.90990 1.55808 1.43397 1.54661 1.42488 1.05223 1.09143 1.74129 1.17678 0.85246 0.86639 1.01014 1.67677 1.05166 1.31581 1.14422 1.23052 0.89565 0.98182 0.97494 1.22273 1.02609 0.91669 1.00165 1.21897 0.90869 1.02446 1.02139 1.19674 0.91180 0.87385 1.02811 1.86023 1.35330 1.15792 1.87055 1.22957 0.97753 0.77681 1.00702 1.18946 0.93585 0.92078 0.96127 1.21432 0.94294 0.91864 1.50494 0.91104 1.25956 0.95162 1.03941 0.94474 1.70102 1.04451 1.32321 1.49950 0.85322 0.79132 0.78400 0.77734 1.18150 1.20479 1.20501 0.92554 0.93101 0.92323 0.91570 0.90761 0.84370 0.84160 0.92227 0.91943 0.75710 0.73705 0.79776 0.80671 0.82475 0.91782 0.91809 0.97965 0.98009 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.80 71.98 0.71 -0.98 16 2 C -0.11 -1.30 5.58 30.59 0.17 -1.13 16 3 C 0.09 1.18 2.98 44.92 0.13 1.31 16 4 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 5 N -0.84 -10.70 8.63 -168.67 -1.46 -12.15 16 6 C 0.11 1.88 5.34 86.38 0.46 2.35 16 7 N -0.73 -14.88 5.35 -478.51 -2.56 -17.44 16 8 C 0.69 20.69 8.53 179.06 1.53 22.21 16 9 O -0.57 -21.47 14.59 -4.00 -0.06 -21.52 16 10 N -0.66 -19.84 5.40 -321.77 -1.74 -21.57 16 11 C 0.33 11.00 7.45 132.98 0.99 11.99 16 12 N -0.47 -15.89 7.87 -192.59 -1.52 -17.41 16 13 C 0.07 1.87 11.17 84.63 0.95 2.82 16 14 C -0.15 -3.20 10.10 22.36 0.23 -2.97 16 15 C -0.15 -3.97 9.14 22.53 0.21 -3.76 16 16 C 0.04 1.33 6.72 22.70 0.15 1.48 16 17 O -0.33 -12.07 9.39 -93.36 -0.88 -12.95 16 18 C 0.08 3.23 4.70 71.98 0.34 3.56 16 19 C 0.03 1.49 5.34 29.85 0.16 1.65 16 20 C -0.54 -28.78 9.11 25.60 0.23 -28.54 16 21 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 22 C 0.00 0.19 5.46 84.65 0.46 0.65 16 23 N -0.93 -54.00 13.29 21.45 0.28 -53.71 16 24 Si 0.97 41.78 29.54 68.60 2.03 43.80 16 25 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 26 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.81 7.75 -2.39 -0.02 0.80 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 33 H 0.34 4.13 7.53 -89.70 -0.68 3.46 16 34 H 0.35 4.22 9.00 -89.70 -0.81 3.41 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.41 6.30 7.17 -92.71 -0.66 5.64 16 38 H 0.42 11.36 8.06 -92.71 -0.75 10.61 16 39 H 0.19 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.16 3.79 6.44 -2.91 -0.02 3.77 16 42 H 0.06 2.31 7.69 -2.39 -0.02 2.29 16 43 H 0.06 2.30 7.71 -2.39 -0.02 2.29 16 44 H 0.00 0.10 8.14 -2.39 -0.02 0.09 16 45 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 46 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -71.66 383.59 -1.04 -72.70 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -1.86 Total: 29.62 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 6.71 Total: 10.63 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -6.98 Total: -122.29 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.93 Total: -34.47 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -71.66 -1.04 -72.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415502235.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.724 kcal (2) G-P(sol) polarization free energy of solvation -71.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds