Wall clock time and date at job start Tue Mar 31 2020 14:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00445 * 2 1 4 4 C 1.52999 * 112.85153 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47149 * 173.80416 * 4 3 2 6 6 C 1.53004 * 109.47016 * 293.80514 * 4 3 2 7 7 N 1.46501 * 109.47087 * 53.80266 * 4 3 2 8 8 C 1.34779 * 120.00032 * 154.99977 * 7 4 3 9 9 O 1.21840 * 120.00106 * 0.02562 * 8 7 4 10 10 N 1.33828 * 120.00127 * 179.97438 * 8 7 4 11 11 C 1.32938 * 120.00285 * 180.02562 * 10 8 7 12 12 C 1.41205 * 126.37378 * 0.02562 * 11 10 8 13 13 C 1.34964 * 108.24132 * 179.97438 * 12 11 10 14 14 N 1.36453 * 108.94829 * 0.02562 * 13 12 11 15 15 C 1.46495 * 125.85252 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47426 * 85.02220 * 15 14 13 17 17 H 1.08001 * 119.99569 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00060 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99918 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00042 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46928 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46952 * 120.00219 * 20 18 16 23 23 H 1.48499 * 109.47144 * 239.99958 * 20 18 16 24 24 N 1.37418 * 126.38338 * 180.02562 * 11 10 8 25 25 H 0.97004 * 126.35846 * 359.97438 * 24 11 10 26 26 C 1.53777 * 113.69183 * 311.26802 * 3 2 1 27 27 C 1.53781 * 87.08297 * 89.12644 * 26 3 2 28 28 C 1.53781 * 113.61655 * 48.80501 * 3 2 1 29 29 H 1.08999 * 109.47079 * 59.99591 * 1 2 3 30 30 H 1.08998 * 109.47509 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46847 * 300.00260 * 1 2 3 32 32 H 1.08994 * 109.47543 * 59.99878 * 6 4 3 33 33 H 1.09001 * 109.46898 * 180.02562 * 6 4 3 34 34 H 1.09000 * 109.47120 * 299.99407 * 6 4 3 35 35 H 0.96995 * 119.99995 * 335.00338 * 7 4 3 36 36 H 1.08002 * 125.88050 * 359.96219 * 12 11 10 37 37 H 1.07999 * 125.52317 * 179.74257 * 13 12 11 38 38 H 1.08997 * 109.46982 * 205.02317 * 15 14 13 39 39 H 1.09004 * 109.47194 * 325.01878 * 15 14 13 40 40 H 0.97007 * 120.00218 * 179.97438 * 19 18 16 41 41 H 1.09001 * 113.62103 * 203.67713 * 26 3 2 42 42 H 1.09005 * 113.61657 * 334.58142 * 26 3 2 43 43 H 1.09005 * 113.61784 * 270.88769 * 27 26 3 44 44 H 1.08997 * 113.61920 * 139.98117 * 27 26 3 45 45 H 1.09002 * 113.61362 * 25.34626 * 28 3 2 46 46 H 1.08996 * 113.61760 * 156.25220 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5400 1.2746 -0.0006 5 1 3.9237 2.2888 -0.1115 6 6 4.0387 0.6819 1.3189 7 7 4.0113 0.4494 -1.1156 8 6 5.2375 0.6560 -1.6356 9 8 5.9542 1.5286 -1.1780 10 7 5.6683 -0.0982 -2.6538 11 6 6.8779 0.1052 -3.1663 12 6 7.8148 1.0732 -2.7431 13 6 8.9175 0.9588 -3.5129 14 7 8.7252 -0.0460 -4.4158 15 6 9.6872 -0.4838 -5.4302 16 6 10.6422 -1.4778 -4.8212 17 1 10.5422 -1.7560 -3.7824 18 6 11.6428 -2.0329 -5.5903 19 7 11.7642 -1.6945 -6.8553 20 14 12.8271 -3.2645 -4.8351 21 1 12.4795 -3.4734 -3.4065 22 1 12.7285 -4.5556 -5.5620 23 1 14.2141 -2.7439 -4.9367 24 7 7.4494 -0.5873 -4.2066 25 1 7.0452 -1.3159 -4.7033 26 6 1.4132 2.2477 -1.0584 27 6 0.3748 2.6522 0.0012 28 6 1.4132 2.2457 1.0602 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.6549 -0.3322 1.4298 33 1 5.1285 0.6604 1.3186 34 1 3.6880 1.2959 2.1485 35 1 3.4409 -0.2455 -1.4796 36 1 7.6733 1.7831 -1.9416 37 1 9.8060 1.5672 -3.4308 38 1 9.1546 -0.9519 -6.2580 39 1 10.2449 0.3776 -5.7978 40 1 12.4685 -2.0847 -7.3964 41 1 2.0811 3.0591 -1.3473 42 1 0.9835 1.7268 -1.9142 43 1 -0.5168 2.0251 0.0007 44 1 0.1441 3.7175 0.0023 45 1 0.9835 1.7232 1.9150 46 1 2.0811 3.0566 1.3506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416866435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:36 Heat of formation + Delta-G solvation = 59.823385 kcal Electronic energy + Delta-G solvation = -27074.071792 eV Core-core repulsion = 23196.156997 eV Total energy + Delta-G solvation = -3877.914795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.92127 -40.67103 -38.63759 -35.38157 -34.78604 -33.95786 -32.83378 -31.00026 -30.92623 -29.86466 -27.69741 -26.64662 -25.95661 -24.63030 -23.32104 -22.20113 -21.24062 -20.83008 -20.19362 -19.45120 -17.56154 -16.94874 -16.57013 -16.36066 -15.66599 -15.42728 -15.31108 -14.88799 -14.81552 -14.41908 -14.04701 -13.99184 -13.74716 -13.49731 -13.24411 -13.02925 -12.67862 -12.57664 -12.44357 -12.40713 -12.05748 -11.99085 -11.91798 -11.37001 -11.20530 -11.06080 -11.01184 -10.70457 -10.51333 -10.33788 -10.24880 -9.62793 -9.59660 -9.51068 -8.96007 -8.89913 -8.46479 -8.25917 -6.82589 -6.44672 -4.62399 1.86215 2.15541 3.06492 3.15897 3.20410 3.23959 3.42256 3.70881 4.09033 4.23016 4.31595 4.48022 4.53699 4.63854 4.79080 4.84363 5.01269 5.09271 5.18312 5.32993 5.37213 5.42015 5.46918 5.50824 5.56625 5.64665 5.69330 5.76762 5.78613 5.90334 5.99751 6.04514 6.12233 6.34182 6.43399 6.58452 6.60458 6.80326 7.00683 7.24089 7.42015 7.47709 7.55124 7.70364 7.94546 8.39653 8.49626 8.56890 9.08121 9.72742 10.55341 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030055 B = 0.002161 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.388462 B =12953.344109 C =13033.717409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.354 6.354 3 C 0.091 3.909 4 C 0.190 3.810 5 H 0.095 0.905 6 C -0.161 4.161 7 N -0.720 5.720 8 C 0.686 3.314 9 O -0.635 6.635 10 N -0.712 5.712 11 C 0.486 3.514 12 C -0.333 4.333 13 C 0.160 3.840 14 N -0.347 5.347 15 C 0.255 3.745 16 C -0.556 4.556 17 H 0.070 0.930 18 C 0.069 3.931 19 N -0.887 5.887 20 Si 0.909 3.091 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.279 1.279 24 N -0.473 5.473 25 H 0.444 0.556 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.159 4.159 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.401 0.599 36 H 0.183 0.817 37 H 0.186 0.814 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.271 0.729 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.254 6.632 10.182 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.272 6.272 3 C 0.050 3.950 4 C 0.083 3.917 5 H 0.113 0.887 6 C -0.220 4.220 7 N -0.373 5.373 8 C 0.385 3.615 9 O -0.518 6.518 10 N -0.477 5.477 11 C 0.233 3.767 12 C -0.366 4.366 13 C 0.015 3.985 14 N -0.133 5.133 15 C 0.139 3.861 16 C -0.594 4.594 17 H 0.088 0.912 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.204 1.204 24 N -0.196 5.196 25 H 0.290 0.710 26 C -0.199 4.199 27 C -0.199 4.199 28 C -0.197 4.197 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.235 0.765 36 H 0.200 0.800 37 H 0.203 0.797 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.933 6.286 9.790 21.377 hybrid contribution 0.417 -0.751 0.093 0.865 sum -17.516 5.535 9.883 20.860 Atomic orbital electron populations 1.23056 0.81678 1.02463 1.00219 1.87934 1.19383 1.25532 1.94323 1.22888 0.93013 0.83240 0.95863 1.20572 0.88015 0.96200 0.86874 0.88745 1.22153 1.02139 1.01372 0.96290 1.44634 1.16862 1.39630 1.36212 1.16618 0.81789 0.81470 0.81605 1.90712 1.55667 1.38559 1.66863 1.68057 1.15045 1.40218 1.24355 1.18719 0.89450 0.85510 0.83052 1.22392 0.94719 1.09484 1.10044 1.22789 0.99373 0.88577 0.87721 1.47939 1.04282 1.28573 1.32541 1.20019 0.84350 0.97617 0.84142 1.21470 1.13951 1.25731 0.98250 0.91178 1.24960 0.97334 0.96601 0.94702 1.69908 1.33167 1.42955 1.06384 0.86249 0.80240 0.80391 0.79573 1.19385 1.20553 1.20422 1.44433 1.06822 1.34683 1.33614 0.70954 1.23549 0.98686 0.99995 0.97666 1.23333 0.97756 1.02121 0.96672 1.23523 0.98789 0.99849 0.97564 0.93365 0.89855 0.93472 0.92159 0.91823 0.92440 0.76496 0.80015 0.79742 0.93157 0.91479 0.91945 0.88827 0.90752 0.89081 0.91078 0.90654 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.17 101.05 0.93 1.10 16 2 O -0.35 -3.95 9.96 -35.23 -0.35 -4.30 16 3 C 0.09 0.97 1.03 -89.81 -0.09 0.88 16 4 C 0.19 2.56 2.16 -67.93 -0.15 2.42 16 5 H 0.09 1.37 7.48 -51.93 -0.39 0.99 16 6 C -0.16 -2.10 9.27 37.16 0.34 -1.75 16 7 N -0.72 -11.70 5.06 -58.87 -0.30 -12.00 16 8 C 0.69 13.76 8.44 -87.76 -0.74 13.02 16 9 O -0.64 -13.84 12.93 5.06 0.07 -13.78 16 10 N -0.71 -14.56 10.59 -15.79 -0.17 -14.73 16 11 C 0.49 9.74 8.07 -155.29 -1.25 8.49 16 12 C -0.33 -6.39 9.52 -39.62 -0.38 -6.77 16 13 C 0.16 2.78 11.45 -16.66 -0.19 2.59 16 14 N -0.35 -6.60 3.63 -62.24 -0.23 -6.83 16 15 C 0.26 5.40 6.19 -5.19 -0.03 5.37 16 16 C -0.56 -13.40 9.39 -34.44 -0.32 -13.72 16 17 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 18 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -22.74 13.29 55.43 0.74 -22.01 16 20 Si 0.91 19.49 29.54 -169.99 -5.02 14.47 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 N -0.47 -8.71 7.38 31.33 0.23 -8.47 16 25 H 0.44 7.25 8.96 -182.55 -1.64 5.62 16 26 C -0.16 -1.57 6.89 -25.92 -0.18 -1.75 16 27 C -0.16 -1.22 7.30 -25.92 -0.19 -1.41 16 28 C -0.16 -1.34 6.16 -25.92 -0.16 -1.50 16 29 H 0.05 0.35 5.86 -51.93 -0.30 0.04 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.31 5.86 -51.92 -0.30 0.01 16 32 H 0.06 0.80 8.01 -51.93 -0.42 0.38 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.61 7.61 -51.93 -0.40 0.22 16 35 H 0.40 6.30 8.22 -40.82 -0.34 5.96 16 36 H 0.18 3.66 5.77 -52.49 -0.30 3.36 16 37 H 0.19 2.54 8.06 -52.49 -0.42 2.12 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 41 H 0.09 0.96 8.03 -51.93 -0.42 0.55 16 42 H 0.07 0.74 7.48 -51.93 -0.39 0.35 16 43 H 0.09 0.59 4.83 -51.93 -0.25 0.34 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.59 7.48 -51.93 -0.39 0.20 16 46 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -29.58 372.78 -9.95 -39.53 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -8.03 Total: 13.94 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -2.51 Total: 8.56 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: 0.28 Total: -64.03 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.29 Total: -18.08 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.58 -9.95 -39.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416866435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.355 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds