Wall clock time and date at job start Tue Mar 31 2020 14:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00445 * 2 1 4 4 C 1.52999 * 112.85153 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47149 * 173.80416 * 4 3 2 6 6 C 1.53004 * 109.47016 * 293.80514 * 4 3 2 7 7 N 1.46501 * 109.47087 * 53.80266 * 4 3 2 8 8 C 1.34779 * 120.00032 * 154.99977 * 7 4 3 9 9 O 1.21840 * 120.00106 * 0.02562 * 8 7 4 10 10 N 1.33828 * 120.00127 * 179.97438 * 8 7 4 11 11 C 1.32938 * 120.00285 * 180.02562 * 10 8 7 12 12 C 1.41205 * 126.37378 * 0.02562 * 11 10 8 13 13 C 1.34964 * 108.24132 * 179.97438 * 12 11 10 14 14 N 1.36453 * 108.94829 * 0.02562 * 13 12 11 15 15 C 1.46495 * 125.85252 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47426 * 85.02220 * 15 14 13 17 17 H 1.08001 * 119.99569 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00060 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99918 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00042 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46928 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46952 * 120.00219 * 20 18 16 23 23 H 1.48499 * 109.47144 * 239.99958 * 20 18 16 24 24 N 1.37418 * 126.38338 * 180.02562 * 11 10 8 25 25 H 0.97004 * 126.35846 * 359.97438 * 24 11 10 26 26 C 1.53777 * 113.69183 * 311.26802 * 3 2 1 27 27 C 1.53781 * 87.08297 * 89.12644 * 26 3 2 28 28 C 1.53781 * 113.61655 * 48.80501 * 3 2 1 29 29 H 1.08999 * 109.47079 * 59.99591 * 1 2 3 30 30 H 1.08998 * 109.47509 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46847 * 300.00260 * 1 2 3 32 32 H 1.08994 * 109.47543 * 59.99878 * 6 4 3 33 33 H 1.09001 * 109.46898 * 180.02562 * 6 4 3 34 34 H 1.09000 * 109.47120 * 299.99407 * 6 4 3 35 35 H 0.96995 * 119.99995 * 335.00338 * 7 4 3 36 36 H 1.08002 * 125.88050 * 359.96219 * 12 11 10 37 37 H 1.07999 * 125.52317 * 179.74257 * 13 12 11 38 38 H 1.08997 * 109.46982 * 205.02317 * 15 14 13 39 39 H 1.09004 * 109.47194 * 325.01878 * 15 14 13 40 40 H 0.97007 * 120.00218 * 179.97438 * 19 18 16 41 41 H 1.09001 * 113.62103 * 203.67713 * 26 3 2 42 42 H 1.09005 * 113.61657 * 334.58142 * 26 3 2 43 43 H 1.09005 * 113.61784 * 270.88769 * 27 26 3 44 44 H 1.08997 * 113.61920 * 139.98117 * 27 26 3 45 45 H 1.09002 * 113.61362 * 25.34626 * 28 3 2 46 46 H 1.08996 * 113.61760 * 156.25220 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5400 1.2746 -0.0006 5 1 3.9237 2.2888 -0.1115 6 6 4.0387 0.6819 1.3189 7 7 4.0113 0.4494 -1.1156 8 6 5.2375 0.6560 -1.6356 9 8 5.9542 1.5286 -1.1780 10 7 5.6683 -0.0982 -2.6538 11 6 6.8779 0.1052 -3.1663 12 6 7.8148 1.0732 -2.7431 13 6 8.9175 0.9588 -3.5129 14 7 8.7252 -0.0460 -4.4158 15 6 9.6872 -0.4838 -5.4302 16 6 10.6422 -1.4778 -4.8212 17 1 10.5422 -1.7560 -3.7824 18 6 11.6428 -2.0329 -5.5903 19 7 11.7642 -1.6945 -6.8553 20 14 12.8271 -3.2645 -4.8351 21 1 12.4795 -3.4734 -3.4065 22 1 12.7285 -4.5556 -5.5620 23 1 14.2141 -2.7439 -4.9367 24 7 7.4494 -0.5873 -4.2066 25 1 7.0452 -1.3159 -4.7033 26 6 1.4132 2.2477 -1.0584 27 6 0.3748 2.6522 0.0012 28 6 1.4132 2.2457 1.0602 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.6549 -0.3322 1.4298 33 1 5.1285 0.6604 1.3186 34 1 3.6880 1.2959 2.1485 35 1 3.4409 -0.2455 -1.4796 36 1 7.6733 1.7831 -1.9416 37 1 9.8060 1.5672 -3.4308 38 1 9.1546 -0.9519 -6.2580 39 1 10.2449 0.3776 -5.7978 40 1 12.4685 -2.0847 -7.3964 41 1 2.0811 3.0591 -1.3473 42 1 0.9835 1.7268 -1.9142 43 1 -0.5168 2.0251 0.0007 44 1 0.1441 3.7175 0.0023 45 1 0.9835 1.7232 1.9150 46 1 2.0811 3.0566 1.3506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416866435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:35 Heat of formation + Delta-G solvation = 40.366964 kcal Electronic energy + Delta-G solvation = -27074.915486 eV Core-core repulsion = 23196.156997 eV Total energy + Delta-G solvation = -3878.758489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.23543 -41.69538 -40.08107 -36.48295 -35.88444 -35.49161 -34.51375 -32.51409 -32.43306 -31.20836 -28.42664 -28.32651 -26.72628 -25.52536 -24.91668 -23.54085 -22.68018 -22.04016 -21.20898 -20.66076 -19.05282 -18.69241 -17.79917 -17.44764 -16.90138 -16.56350 -16.54470 -16.36907 -16.03459 -15.72152 -15.51513 -15.33223 -14.64636 -14.48186 -14.40445 -14.36121 -14.22032 -14.09044 -13.64278 -13.26512 -13.11675 -13.07159 -13.00217 -12.84261 -12.75128 -12.32862 -12.31401 -12.01766 -11.69789 -11.45867 -11.21413 -11.18413 -10.97297 -10.76794 -10.47248 -10.34533 -9.87820 -9.79098 -8.52931 -8.17753 -6.54702 0.35286 0.64096 1.37322 1.42611 1.52403 1.71993 2.29574 2.35851 2.73311 2.94279 3.05819 3.20531 3.50601 3.56405 3.71270 3.89391 3.95719 4.24938 4.34875 4.44940 4.47330 4.52609 4.54160 4.57002 4.71614 4.77400 4.79196 4.83159 4.87733 4.88748 4.96973 5.00985 5.03324 5.08170 5.09264 5.28680 5.31524 5.37219 5.53061 5.72389 5.82946 6.01227 6.17256 6.33152 6.38941 6.62543 6.95292 7.08024 7.19139 8.19436 8.67496 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030055 B = 0.002161 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.388462 B =12953.344109 C =13033.717409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.376 6.376 3 C 0.088 3.912 4 C 0.184 3.816 5 H 0.081 0.919 6 C -0.152 4.152 7 N -0.710 5.710 8 C 0.674 3.326 9 O -0.659 6.659 10 N -0.725 5.725 11 C 0.471 3.529 12 C -0.346 4.346 13 C 0.176 3.824 14 N -0.351 5.351 15 C 0.268 3.732 16 C -0.564 4.564 17 H 0.058 0.942 18 C 0.029 3.971 19 N -0.913 5.913 20 Si 0.964 3.036 21 H -0.274 1.274 22 H -0.279 1.279 23 H -0.273 1.273 24 N -0.468 5.468 25 H 0.451 0.549 26 C -0.167 4.167 27 C -0.148 4.148 28 C -0.153 4.153 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.034 0.966 34 H 0.084 0.916 35 H 0.403 0.597 36 H 0.173 0.827 37 H 0.223 0.777 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.274 0.726 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.156 6.847 11.048 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.295 6.295 3 C 0.048 3.952 4 C 0.079 3.921 5 H 0.099 0.901 6 C -0.211 4.211 7 N -0.362 5.362 8 C 0.373 3.627 9 O -0.544 6.544 10 N -0.489 5.489 11 C 0.217 3.783 12 C -0.378 4.378 13 C 0.032 3.968 14 N -0.137 5.137 15 C 0.151 3.849 16 C -0.602 4.602 17 H 0.076 0.924 18 C -0.173 4.173 19 N -0.551 5.551 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.198 1.198 24 N -0.192 5.192 25 H 0.299 0.701 26 C -0.204 4.204 27 C -0.185 4.185 28 C -0.191 4.191 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.238 0.762 36 H 0.190 0.810 37 H 0.239 0.761 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.124 0.876 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.875 6.497 10.666 22.633 hybrid contribution 0.652 -0.824 -0.170 1.065 sum -18.223 5.673 10.496 21.781 Atomic orbital electron populations 1.23257 0.79893 1.03565 1.01252 1.87890 1.21353 1.25658 1.94581 1.22826 0.90879 0.83795 0.97711 1.20757 0.90433 0.94918 0.86017 0.90105 1.22064 1.00173 1.01792 0.97048 1.44662 1.15573 1.39604 1.36392 1.16911 0.82734 0.81364 0.81715 1.90685 1.56597 1.39529 1.67588 1.68105 1.15472 1.40610 1.24758 1.18940 0.89748 0.86102 0.83491 1.22293 0.95405 1.09630 1.10503 1.23329 0.99858 0.87638 0.85952 1.47825 1.04295 1.28954 1.32657 1.19722 0.84082 0.97086 0.84015 1.21642 1.14535 1.26266 0.97749 0.92364 1.25600 0.98682 0.97995 0.95042 1.69967 1.33910 1.43991 1.07238 0.85403 0.78711 0.78537 0.78423 1.19838 1.20436 1.19811 1.44410 1.06601 1.34798 1.33391 0.70102 1.23560 0.99406 0.99507 0.97975 1.23303 0.97409 1.03150 0.94627 1.23525 0.98823 0.99219 0.97541 0.92765 0.88878 0.91877 0.92380 0.94643 0.89763 0.76227 0.80977 0.76067 0.93918 0.91053 0.91719 0.89892 0.91236 0.87620 0.89908 0.89510 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.17 113.37 1.04 1.25 16 2 O -0.38 -7.93 9.96 -148.98 -1.48 -9.41 16 3 C 0.09 1.80 1.03 -10.27 -0.01 1.79 16 4 C 0.18 5.00 2.16 44.99 0.10 5.10 16 5 H 0.08 2.42 7.48 -2.39 -0.02 2.40 16 6 C -0.15 -3.95 9.27 71.98 0.67 -3.29 16 7 N -0.71 -23.56 5.06 -458.32 -2.32 -25.88 16 8 C 0.67 27.72 8.44 179.35 1.51 29.23 16 9 O -0.66 -29.57 12.93 -4.80 -0.06 -29.64 16 10 N -0.72 -30.17 10.59 -322.55 -3.42 -33.59 16 11 C 0.47 19.01 8.07 133.95 1.08 20.10 16 12 C -0.35 -13.25 9.52 22.25 0.21 -13.04 16 13 C 0.18 5.91 11.45 83.22 0.95 6.86 16 14 N -0.35 -13.07 3.63 -350.84 -1.28 -14.34 16 15 C 0.27 11.14 6.19 85.64 0.53 11.67 16 16 C -0.56 -26.73 9.39 25.60 0.24 -26.49 16 17 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 18 C 0.03 1.40 5.46 84.65 0.46 1.87 16 19 N -0.91 -46.15 13.29 21.45 0.28 -45.87 16 20 Si 0.96 39.34 29.54 68.60 2.03 41.36 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 24 N -0.47 -17.18 7.38 -54.79 -0.40 -17.59 16 25 H 0.45 14.74 8.96 -213.28 -1.91 12.83 16 26 C -0.17 -3.09 6.89 31.12 0.21 -2.88 16 27 C -0.15 -1.87 7.30 31.12 0.23 -1.65 16 28 C -0.15 -2.23 6.16 31.12 0.19 -2.04 16 29 H 0.05 0.66 5.86 -2.39 -0.01 0.65 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 0.65 5.86 -2.38 -0.01 0.63 16 32 H 0.06 1.52 8.01 -2.39 -0.02 1.50 16 33 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.69 7.61 -2.39 -0.02 1.67 16 35 H 0.40 12.88 8.22 -92.71 -0.76 12.12 16 36 H 0.17 7.05 5.77 -2.91 -0.02 7.03 16 37 H 0.22 5.55 8.06 -2.91 -0.02 5.53 16 38 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.27 13.11 8.31 -92.70 -0.77 12.34 16 41 H 0.08 1.70 8.03 -2.39 -0.02 1.68 16 42 H 0.07 1.34 7.48 -2.38 -0.02 1.32 16 43 H 0.11 1.04 4.83 -2.38 -0.01 1.03 16 44 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.09 1.09 7.48 -2.39 -0.02 1.07 16 46 H 0.10 1.37 8.10 -2.39 -0.02 1.35 16 Total: -1.00 -63.04 372.78 -0.88 -63.92 By element: Atomic # 1 Polarization: 44.18 SS G_CDS: -1.65 Total: 42.53 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 7.42 Total: 28.50 kcal Atomic # 7 Polarization: -130.13 SS G_CDS: -7.13 Total: -137.26 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.55 Total: -39.05 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.36 kcal Total: -63.04 -0.88 -63.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416866435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.289 kcal (2) G-P(sol) polarization free energy of solvation -63.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds